Works matching IS 03051048 AND DT 2020 AND VI 48 AND IP 3

Results: 51

Translational recoding: canonical translation mechanisms reinterpreted.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 3, p. 1056, doi. 10.1093/nar/gkz783

By:

Rodnina, Marina V;
Korniy, Natalia;
Klimova, Mariia;
Karki, Prajwal;
Peng, Bee-Zen;
Senyushkina, Tamara;
Belardinelli, Riccardo;
Maracci, Cristina;
Wohlgemuth, Ingo;
Samatova, Ekaterina;
Peske, Frank

Publication type:

Article

Ribosome pausing, a dangerous necessity for co-translational events.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 3, p. 1043, doi. 10.1093/nar/gkz763

By:

Collart, Martine A;
Weiss, Benjamin

Publication type:

Article

Subtle structural alterations in G-quadruplex DNA regulate site specificity of fluorescence light-up probes.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 3, p. 1108, doi. 10.1093/nar/gkz1205

By:

Kumar, Rajendra;
Chand, Karam;
Bhowmik, Sudipta;
Das, Rabindra Nath;
Bhattacharjee, Snehasish;
Hedenström, Mattias;
Chorell, Erik

Publication type:

Article

Quality controls induced by aberrant translation.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 3, p. 1084, doi. 10.1093/nar/gkz1201

By:

Inada, Toshifumi

Publication type:

Article

Myrf guides target gene selection of transcription factor Sox10 during oligodendroglial development.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 3, p. 1254, doi. 10.1093/nar/gkz1158

By:

Aprato, Jessica;
Sock, Elisabeth;
Weider, Matthias;
Elsesser, Olga;
Fröb, Franziska;
Wegner, Michael

Publication type:

Article

Alternative ORFs and small ORFs: shedding light on the dark proteome.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 3, p. 1029, doi. 10.1093/nar/gkz734

By:

Orr, Mona Wu;
Mao, Yuanhui;
Storz, Gisela;
Qian, Shu-Bing

Publication type:

Article

Hallmarks of ribosomopathies.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 3, p. 1013, doi. 10.1093/nar/gkz637

By:

Kampen, Kim R;
Sulima, Sergey O;
Vereecke, Stijn;
De Keersmaecker, Kim

Publication type:

Article

Secondary nucleotide messenger c-di-GMP exerts a global control on natural product biosynthesis in streptomycetes.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 3, p. 1583, doi. 10.1093/nar/gkz1220

By:

Makitrynskyy, Roman;
Tsypik, Olga;
Nuzzo, Desirèe;
Paululat, Thomas;
Zechel, David L;
Bechthold, Andreas

Publication type:

Article

Novel diagnostic tool for prediction of variant spliceogenicity derived from a set of 395 combined in silico/in vitro studies: an international collaborative effort.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 3, p. 1600, doi. 10.1093/nar/gkz1212

By:

Leman, Raphaël;
Gaildrat, Pascaline;
Le Gac, Gérald;
Ka, Chandran;
Fichou, Yann;
Audrezet, Marie-Pierre;
Caux-Moncoutier, Virginie;
Caputo, Sandrine M;
Boutry-Kryza, Nadia;
Léone, Mélanie;
Mazoyer, Sylvie;
Bonnet-Dorion, Françoise;
Sevenet, Nicolas;
Guillaud-Bataille, Marine;
Rouleau, Etienne;
Bressac-de Paillerets, Brigitte;
Wappenschmidt, Barbara;
Rossing, Maria;
Muller, Danielle;
Bourdon, Violaine

Publication type:

Article

Editorial: Ribosome survey and summary collection 2020.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 3, p. 1011, doi. 10.1093/nar/gkz1217

By:

Dunham, Christine M;
Dynan, William S;
Mankin, Alexander

Publication type:

Article

The hepatitis C viral nonstructural protein 5A stabilizes growth-regulatory human transcripts.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 3, p. 1599, doi. 10.1093/nar/gkz1211

By:

Guo, Liang;
Sharma, Suresh D;
Debes, Jose D;
Beisang, Daniel;
Rattenbacher, Bernd;
Louis, Irina Vlasova-St;
Wiesner, Darin L;
Cameron, Craig E;
Bohjanen, Paul R

Publication type:

Article

Crystal structure of human cytoplasmic tRNA<sup>His</sup>-specific 5′-monomethylphosphate capping enzyme.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 3, p. 1572, doi. 10.1093/nar/gkz1216

By:

Liu, Yining;
Martinez, Anna;
Yamashita, Seisuke;
Tomita, Kozo

Publication type:

Article

Cytosine epigenetic modification modulates the formation of an unprecedented G4 structure in the WNT1 promoter.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 3, p. 1120, doi. 10.1093/nar/gkz1207

By:

Wang, Zi-Fu;
Li, Ming-Hao;
Chu, I-Te;
Winnerdy, Fernaldo R;
Phan, Anh T;
Chang, Ta-Chau

Publication type:

Article

Structure of HhaI endonuclease with cognate DNA at an atomic resolution of 1.0 Å.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 3, p. 1466, doi. 10.1093/nar/gkz1195

By:

Horton, John R;
Yang, Jie;
Zhang, Xing;
Petronzio, Theresa;
Fomenkov, Alexey;
Wilson, Geoffrey G;
Roberts, Richard J;
Cheng, Xiaodong

Publication type:

Article

Accurate inference of the full base-pairing structure of RNA by deep mutational scanning and covariation-induced deviation of activity.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 3, p. 1451, doi. 10.1093/nar/gkz1192

By:

Zhang, Zhe;
Xiong, Peng;
Zhang, Tongchuan;
Wang, Junfeng;
Zhan, Jian;
Zhou, Yaoqi

Publication type:

Article

Identification of the 3-amino-3-carboxypropyl (acp) transferase enzyme responsible for acp<sup>3</sup>U formation at position 47 in Escherichia coli tRNAs.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 3, p. 1435, doi. 10.1093/nar/gkz1191

By:

Meyer, Britta;
Immer, Carina;
Kaiser, Steffen;
Sharma, Sunny;
Yang, Jun;
Watzinger, Peter;
Weiß, Lena;
Kotter, Annika;
Helm, Mark;
Seitz, Hans-Michael;
Kötter, Peter;
Kellner, Stefanie;
Entian, Karl-Dieter;
Wöhnert, Jens

Publication type:

Article

Dynamics of the nucleosomal histone H3 N-terminal tail revealed by high precision single-molecule FRET.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 3, p. 1551, doi. 10.1093/nar/gkz1186

By:

Lehmann, Kathrin;
Felekyan, Suren;
Kühnemuth, Ralf;
Dimura, Mykola;
Tóth, Katalin;
Seidel, Claus A M;
Langowski, Jörg

Publication type:

Article

Deamination hotspots among APOBEC3 family members are defined by both target site sequence context and ssDNA secondary structure.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 3, p. 1353, doi. 10.1093/nar/gkz1164

By:

McDaniel, Yumeng Z;
Wang, Dake;
Love, Robin P;
Adolph, Madison B;
Mohammadzadeh, Nazanin;
Chelico, Linda;
Mansky, Louis M

Publication type:

Article

Direct observation of damage clustering in irradiated DNA with atomic force microscopy.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 3, p. e18, doi. 10.1093/nar/gkz1159

By:

Xu, Xu;
Nakano, Toshiaki;
Tsuda, Masataka;
Kanamoto, Ryota;
Hirayama, Ryoichi;
Uzawa, Akiko;
Ide, Hiroshi

Publication type:

Article

Mkt1 is required for RNAi-mediated silencing and establishment of heterochromatin in fission yeast.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 3, p. 1239, doi. 10.1093/nar/gkz1157

By:

Taglini, Francesca;
Chapman, Elliott;
van Nues, Rob;
Theron, Emmanuelle;
Bayne, Elizabeth H

Publication type:

Article

AtFKBP53: a chimeric histone chaperone with functional nucleoplasmin and PPIase domains.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 3, p. 1531, doi. 10.1093/nar/gkz1153

By:

Singh, Ajit Kumar;
Datta, Aritreyee;
Jobichen, Chacko;
Luan, Sheng;
Vasudevan, Dileep

Publication type:

Article

FLASH: ultra-fast protocol to identify RNA–protein interactions in cells.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 3, p. e15, doi. 10.1093/nar/gkz1141

By:

Ilik, Ibrahim Avsar;
Aktas, Tugce;
Maticzka, Daniel;
Backofen, Rolf;
Akhtar, Asifa

Publication type:

Article

Conformational ensembles of an RNA hairpin using molecular dynamics and sparse NMR data.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 3, p. 1164, doi. 10.1093/nar/gkz1184

By:

Reißer, Sabine;
Zucchelli, Silvia;
Gustincich, Stefano;
Bussi, Giovanni

Publication type:

Article

Dynamic changes in intron retention are tightly associated with regulation of splicing factors and proliferative activity during B-cell development.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 3, p. 1327, doi. 10.1093/nar/gkz1180

By:

Ullrich, Sebastian;
Guigó, Roderic

Publication type:

Article

Structural basis for the evolution of cyclic phosphodiesterase activity in the U6 snRNA exoribonuclease Usb1.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 3, p. 1423, doi. 10.1093/nar/gkz1177

By:

Nomura, Yuichiro;
Montemayor, Eric J;
Virta, Johanna M;
Hayes, Samuel M;
Butcher, Samuel E

Publication type:

Article

Divalent cations promote TALE DNA-binding specificity.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 3, p. 1406, doi. 10.1093/nar/gkz1174

By:

Cuculis, Luke;
Zhao, Chuankai;
Abil, Zhanar;
Zhao, Huimin;
Shukla, Diwakar;
Schroeder, Charles M

Publication type:

Article

Identification and characterization of occult human-specific LINE-1 insertions using long-read sequencing technology.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 3, p. 1146, doi. 10.1093/nar/gkz1173

By:

Zhou, Weichen;
Emery, Sarah B;
Flasch, Diane A;
Wang, Yifan;
Kwan, Kenneth Y;
Kidd, Jeffrey M;
Moran, John V;
Mills, Ryan E

Publication type:

Article

Golgi-endosome transport mediated by M6PR facilitates release of antisense oligonucleotides from endosomes.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 3, p. 1372, doi. 10.1093/nar/gkz1171

By:

Liang, Xue-hai;
Sun, Hong;
Hsu, Chih-Wei;
Nichols, Joshua G;
Vickers, Timothy A;
De Hoyos, Cheryl L;
Crooke, Stanley T

Publication type:

Article

A nucleobase-binding pocket in a viral RNA-dependent RNA polymerase contributes to elongation complex stability.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 3, p. 1392, doi. 10.1093/nar/gkz1170

By:

Shi, Wei;
Ye, Han-Qing;
Deng, Cheng-Lin;
Li, Rui;
Zhang, Bo;
Gong, Peng

Publication type:

Article

Integrative analyses of noncoding RNAs reveal the potential mechanisms augmenting tumor malignancy in lung adenocarcinoma.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 3, p. 1175, doi. 10.1093/nar/gkz1149

By:

Shih, Jou-Ho;
Chen, Hsin-Yi;
Lin, Shin-Chih;
Yeh, Yi-Chen;
Shen, Roger;
Lang, Yaw-Dong;
Wu, Dung-Chi;
Chen, Chien-Yu;
Chen, Ruey-Hwa;
Chou, Teh-Ying;
Jou, Yuh-Shan

Publication type:

Article

Spatially multiplexed RNA in situ hybridization to reveal tumor heterogeneity.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 3, p. e17, doi. 10.1093/nar/gkz1151

By:

Voith von Voithenberg, Lena;
Fomitcheva Khartchenko, Anna;
Huber, Deborah;
Schraml, Peter;
Kaigala, Govind V

Publication type:

Article

Protect-seq: genome-wide profiling of nuclease inaccessible domains reveals physical properties of chromatin.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 3, p. e16, doi. 10.1093/nar/gkz1150

By:

Spracklin, George;
Pradhan, Sriharsa

Publication type:

Article

Composition and processing activity of a semi-recombinant holo U7 snRNP.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 3, p. 1508, doi. 10.1093/nar/gkz1148

By:

Bucholc, Katarzyna;
Aik, Wei Shen;
Yang, Xiao-cui;
Wang, Kaituo;
Zhou, Z Hong;
Dadlez, Michał;
Marzluff, William F;
Tong, Liang;
Dominski, Zbigniew

Publication type:

Article

Phosphorylation of Tet3 by cdk5 is critical for robust activation of BRN2 during neuronal differentiation.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 3, p. 1225, doi. 10.1093/nar/gkz1144

By:

Rao, Vinay Kumar;
Swarnaseetha, Adusumalli;
Tham, Guo-Hong;
Lin, Wei-Qi;
Han, Bin-Bin;
Benoukraf, Touati;
Xu, Guo-Liang;
Ong, Chin-Tong

Publication type:

Article

LGP2 virus sensor enhances apoptosis by upregulating apoptosis regulatory genes through TRBP-bound miRNAs during viral infection.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 3, p. 1494, doi. 10.1093/nar/gkz1143

By:

Takahashi, Tomoko;
Nakano, Yuko;
Onomoto, Koji;
Yoneyama, Mitsutoshi;
Ui-Tei, Kumiko

Publication type:

Article

A dual role of dLsd1 in oogenesis: regulating developmental genes and repressing transposons.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 3, p. 1206, doi. 10.1093/nar/gkz1142

By:

Lepesant, Julie M J;
Iampietro, Carole;
Galeota, Eugenia;
Augé, Benoit;
Aguirrenbengoa, Marion;
Mercé, Clemèntine;
Chaubet, Camille;
Rocher, Vincent;
Haenlin, Marc;
Waltzer, Lucas;
Pelizzola, Mattia;
Di Stefano, Luisa

Publication type:

Article

53BP1/RIF1 signaling promotes cell survival after multifractionated radiotherapy.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 3, p. 1314, doi. 10.1093/nar/gkz1139

By:

Eke, Iris;
Zong, Dali;
Aryankalayil, Molykutty J;
Sandfort, Veit;
Bylicky, Michelle A;
Rath, Barbara H;
Graves, Edward E;
Nussenzweig, André;
Coleman, C Norman

Publication type:

Article

Cell-line specific RNA editing patterns in Trypanosoma brucei suggest a unique mechanism to generate protein variation in a system intolerant to genetic mutations.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 3, p. 1479, doi. 10.1093/nar/gkz1131

By:

Kirby, Laura E;
Koslowsky, Donna

Publication type:

Article

High intrinsic hydrolytic activity of cyanobacterial RNA polymerase compensates for the absence of transcription proofreading factors.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 3, p. 1341, doi. 10.1093/nar/gkz1130

By:

Riaz-Bradley, Amber;
James, Katherine;
Yuzenkova, Yulia

Publication type:

Article

HECTD1 promotes base excision repair in nucleosomes through chromatin remodelling.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 3, p. 1301, doi. 10.1093/nar/gkz1129

By:

Bennett, Laura;
Madders, Eleanor C E T;
Parsons, Jason L

Publication type:

Article

Regioselective formation of RNA strands in the absence of magnesium ions.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 3, p. 1097, doi. 10.1093/nar/gkz1125

By:

Motsch, Sebastian;
Tremmel, Peter;
Richert, Clemens

Publication type:

Article

STRIDE—a fluorescence method for direct, specific in situ detection of individual single- or double-strand DNA breaks in fixed cells.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 3, p. e14, doi. 10.1093/nar/gkz1118

By:

Kordon, Magdalena M;
Zarębski, Mirosław;
Solarczyk, Kamil;
Ma, Hanhui;
Pederson, Thoru;
Dobrucki, Jurek W

Publication type:

Article

An R-loop-initiated CSB–RAD52–POLD3 pathway suppresses ROS-induced telomeric DNA breaks.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 3, p. 1285, doi. 10.1093/nar/gkz1114

By:

Tan, Jun;
Duan, Meihan;
Yadav, Tribhuwan;
Phoon, Laiyee;
Wang, Xiangyu;
Zhang, Jia-Min;
Zou, Lee;
Lan, Li

Publication type:

Article

Homologous recombination repair intermediates promote efficient de novo telomere addition at DNA double-strand breaks.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 3, p. 1271, doi. 10.1093/nar/gkz1109

By:

Davé, Anoushka;
Pai, Chen-Chun;
Durley, Samuel C;
Hulme, Lydia;
Sarkar, Sovan;
Wee, Boon-Yu;
Prudden, John;
Tinline-Purvis, Helen;
Cullen, Jason K;
Walker, Carol;
Watson, Adam;
Carr, Antony M;
Murray, Johanne M;
Humphrey, Timothy C

Publication type:

Article

Differences in the intrinsic spatial dynamics of the chromatin contribute to cell differentiation.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 3, p. 1131, doi. 10.1093/nar/gkz1102

By:

Zhang, She;
Chen, Fangyuan;
Bahar, Ivet

Publication type:

Article

Strategies for in vitro engineering of the translation machinery.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 3, p. 1068, doi. 10.1093/nar/gkz1011

By:

Hammerling, Michael J;
Krüger, Antje;
Jewett, Michael C

Publication type:

Article

A guide to computational methods for G-quadruplex prediction.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 3, p. 1603, doi. 10.1093/nar/gkaa033

By:

Lombardi, Emilia Puig;
Londoño-Vallejo, Arturo

Publication type:

Article

A transient reporter for editing enrichment (TREE) in human cells.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 3, p. 1602, doi. 10.1093/nar/gkaa027

By:

Standage-Beier, Kylie;
Tekel, Stefan J;
Brookhouser, Nicholas;
Schwarz, Grace;
Nguyen, Toan;
Wang, Xiao;
Brafman, David A

Publication type:

Article

Structural and functional characterizations of mung bean mitochondrial nucleoids.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 3, p. 1606, doi. 10.1093/nar/gkaa021

By:

Dai, Hwa;
Lo, Yih-Shan;
Litvinchuk, Alexandra;
Wang, Yuh-Tai;
Jane, Wann-Neng;
Hsiao, Lin-June;
Chiang, Kwen-Sheng

Publication type:

Article

Prevalence and architecture of posttranscriptionally impaired synonymous mutations in 8,320 genomes across 22 cancer types.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 3, p. 1192, doi. 10.1093/nar/gkaa019

By:

Teng, Huajing;
Wei, Wenqing;
Li, Qinglan;
Xue, Meiying;
Shi, Xiaohui;
Li, Xianfeng;
Mao, Fengbiao;
Sun, Zhongsheng

Publication type:

Article