Works matching IS 03051048 AND DT 2020 AND VI 48 AND IP 2

Results: 41

Targeted insertional mutagenesis libraries for deep domain insertion profiling.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 2, p. 1010, doi. 10.1093/nar/gkz1155

By:

Coyote-Maestas, Willow;
Nedrud, David;
Okorafor, Steffan;
He, Yungui;
Schmidt, Daniel

Publication type:

Article

Same fold, different properties: polarizable molecular dynamics simulations of telomeric and TERRA G-quadruplexes.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 2, p. 561, doi. 10.1093/nar/gkz1154

By:

Lemkul, Justin A

Publication type:

Article

Cross-subunit catalysis and a new phenomenon of recessive resurrection in Escherichia coli RNase E.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 2, p. 847, doi. 10.1093/nar/gkz1152

By:

Ali, Nida;
Gowrishankar, Jayaraman

Publication type:

Article

The human methyltransferase ZCCHC4 catalyses N<sup>6</sup>-methyladenosine modification of 28S ribosomal RNA.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 2, p. 830, doi. 10.1093/nar/gkz1147

By:

Pinto, Rita;
Vågbø, Cathrine B;
Jakobsson, Magnus E;
Kim, Yeji;
Baltissen, Marijke P;
O'Donohue, Marie-Françoise;
Guzmán, Ulises H;
Małecki, Jędrzej M;
Wu, Jie;
Kirpekar, Finn;
Olsen, Jesper V;
Gleizes, Pierre-Emmanuel;
Vermeulen, Michiel;
Leidel, Sebastian A;
Slupphaug, Geir;
Falnes, Pål Ø

Publication type:

Article

mRNA regions where 80S ribosomes pause during translation elongation in vivo interact with protein uS19, a component of the decoding site.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 2, p. 912, doi. 10.1093/nar/gkz1145

By:

Babaylova, Elena S;
Gopanenko, Alexander V;
Bulygin, Konstantin N;
Tupikin, Alexey E;
Kabilov, Marsel R;
Malygin, Alexey A;
Karpova, Galina G

Publication type:

Article

Heterochromatin protein 1α interacts with parallel RNA and DNA G-quadruplexes.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 2, p. 682, doi. 10.1093/nar/gkz1138

By:

Roach, Ruby J;
Garavís, Miguel;
González, Carlos;
Jameson, Geoffrey B;
Filichev, Vyacheslav V;
Hale, Tracy K

Publication type:

Article

Free energy landscape of salt-actuated reconfigurable DNA nanodevices.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 2, p. 548, doi. 10.1093/nar/gkz1137

By:

Shi, Ze;
Arya, Gaurav

Publication type:

Article

Inhibition of histone deacetylase 1 (HDAC1) and HDAC2 enhances CRISPR/Cas9 genome editing.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 2, p. 517, doi. 10.1093/nar/gkz1136

By:

Liu, Bin;
Chen, Siwei;
Rose, Anouk La;
Chen, Deng;
Cao, Fangyuan;
Zwinderman, Martijn;
Kiemel, Dominik;
Aïssi, Manon;
Dekker, Frank J;
Haisma, Hidde J

Publication type:

Article

Negative cooperativity between Gemin2 and RNA provides insights into RNA selection and the SMN complex's release in snRNP assembly.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 2, p. 895, doi. 10.1093/nar/gkz1135

By:

Yi, Hongfei;
Mu, Li;
Shen, Congcong;
Kong, Xi;
Wang, Yingzhi;
Hou, Yan;
Zhang, Rundong

Publication type:

Article

Allele-specific single-cell RNA sequencing reveals different architectures of intrinsic and extrinsic gene expression noises.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 2, p. 533, doi. 10.1093/nar/gkz1134

By:

Sun, Mengyi;
Zhang, Jianzhi

Publication type:

Article

Structural basis of non-canonical transcriptional regulation by the σ<sup>A</sup>-bound iron-sulfur protein WhiB1 in M. tuberculosis.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 2, p. 501, doi. 10.1093/nar/gkz1133

By:

Wan, Tao;
Li, Shanren;
Beltran, Daisy Guiza;
Schacht, Andrew;
Zhang, Lu;
Becker, Donald F;
Zhang, LiMei

Publication type:

Article

Hybridization-mediated off-target effects of splice-switching antisense oligonucleotides.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 2, p. 802, doi. 10.1093/nar/gkz1132

By:

Scharner, Juergen;
Ma, Wai Kit;
Zhang, Qian;
Lin, Kuan-Ting;
Rigo, Frank;
Bennett, C Frank;
Krainer, Adrian R

Publication type:

Article

mitoXplorer, a visual data mining platform to systematically analyze and visualize mitochondrial expression dynamics and mutations.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 2, p. 605, doi. 10.1093/nar/gkz1128

By:

Yim, Annie;
Koti, Prasanna;
Bonnard, Adrien;
Marchiano, Fabio;
Dürrbaum, Milena;
Garcia-Perez, Cecilia;
Villaveces, Jose;
Gamal, Salma;
Cardone, Giovanni;
Perocchi, Fabiana;
Storchova, Zuzana;
Habermann, Bianca H

Publication type:

Article

SIRT1/2 orchestrate acquisition of DNA methylation and loss of histone H3 activating marks to prevent premature activation of inflammatory genes in macrophages.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 2, p. 665, doi. 10.1093/nar/gkz1127

By:

Li, Tianlu;
Garcia-Gomez, Antonio;
Morante-Palacios, Octavio;
Ciudad, Laura;
Özkaramehmet, Sevgi;
Van Dijck, Evelien;
Rodríguez-Ubreva, Javier;
Vaquero, Alejandro;
Ballestar, Esteban

Publication type:

Article

Structural basis for the dimerization of Gemin5 and its role in protein recruitment and translation control.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 2, p. 788, doi. 10.1093/nar/gkz1126

By:

Moreno-Morcillo, María;
Francisco-Velilla, Rosario;
Embarc-Buh, Azman;
Fernández-Chamorro, Javier;
Ramón-Maiques, Santiago;
Martinez-Salas, Encarnacion

Publication type:

Article

Mapping RNA–capsid interactions and RNA secondary structure within virus particles using next-generation sequencing.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 2, p. e12, doi. 10.1093/nar/gkz1124

By:

Zhou, Yiyang;
Routh, Andrew

Publication type:

Article

Design of a programmable biosensor-CRISPRi genetic circuits for dynamic and autonomous dual-control of metabolic flux in Bacillus subtilis.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 2, p. 996, doi. 10.1093/nar/gkz1123

By:

Wu, Yaokang;
Chen, Taichi;
Liu, Yanfeng;
Tian, Rongzhen;
Lv, Xueqin;
Li, Jianghua;
Du, Guocheng;
Chen, Jian;
Ledesma-Amaro, Rodrigo;
Liu, Long

Publication type:

Article

Conformation-dependent restraints for polynucleotides: the sugar moiety.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 2, p. 962, doi. 10.1093/nar/gkz1122

By:

Kowiel, Marcin;
Brzezinski, Dariusz;
Gilski, Miroslaw;
Jaskolski, Mariusz

Publication type:

Article

Expanding the editable genome and CRISPR–Cas9 versatility using DNA cutting-free gene targeting based on in trans paired nicking.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 2, p. 974, doi. 10.1093/nar/gkz1121

By:

Chen, Xiaoyu;
Tasca, Francesca;
Wang, Qian;
Liu, Jin;
Janssen, Josephine M;
Brescia, Marcella D;
Bellin, Milena;
Szuhai, Karoly;
Kenrick, Josefin;
Frock, Richard L;
Gonçalves, Manuel A F V

Publication type:

Article

Different class IIa HDACs repressive complexes regulate specific epigenetic responses related to cell survival in leiomyosarcoma cells.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 2, p. 646, doi. 10.1093/nar/gkz1120

By:

Di Giorgio, Eros;
Dalla, Emiliano;
Franforte, Elisa;
Paluvai, Harikrishnareddy;
Minisini, Martina;
Trevisanut, Matteo;
Picco, Raffaella;
Brancolini, Claudio

Publication type:

Article

Sam68 binds Alu-rich introns in SMN and promotes pre-mRNA circularization.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 2, p. 633, doi. 10.1093/nar/gkz1117

By:

Pagliarini, Vittoria;
Jolly, Ariane;
Bielli, Pamela;
Di Rosa, Valentina;
De la Grange, Pierre;
Sette, Claudio

Publication type:

Article

Structure of an RNA aptamer in complex with the fluorophore tetramethylrhodamine.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 2, p. 949, doi. 10.1093/nar/gkz1113

By:

Duchardt-Ferner, Elke;
Juen, Michael;
Bourgeois, Benjamin;
Madl, Tobias;
Kreutz, Christoph;
Ohlenschläger, Oliver;
Wöhnert, Jens

Publication type:

Article

Specific enhancer selection by IRF3, IRF5 and IRF9 is determined by ISRE half-sites, 5′ and 3′ flanking bases, collaborating transcription factors and the chromatin environment in a combinatorial fashion.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 2, p. 589, doi. 10.1093/nar/gkz1112

By:

Csumita, Mária;
Csermely, Attila;
Horvath, Attila;
Nagy, Gergely;
Monori, Fanny;
Göczi, Loránd;
Orbea, Hans-Acha;
Reith, Walter;
Széles, Lajos

Publication type:

Article

Characterization of zygotic genome activation-dependent maternal mRNA clearance in mouse.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 2, p. 879, doi. 10.1093/nar/gkz1111

By:

Sha, Qian-Qian;
Zhu, Ye-Zhang;
Li, Sen;
Jiang, Yu;
Chen, Lu;
Sun, Xiao-Hong;
Shen, Li;
Ou, Xiang-Hong;
Fan, Heng-Yu

Publication type:

Article

Targeted insertional mutagenesis libraries for deep domain insertion profiling.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 2, p. e11, doi. 10.1093/nar/gkz1110

By:

Coyote-Maestas, Willow;
Nedrud, David;
Okorafor, Steffan;
He, Yungui;
Schmidt, Daniel

Publication type:

Article

RNA-Puzzles toolkit: a computational resource of RNA 3D structure benchmark datasets, structure manipulation, and evaluation tools.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 2, p. 576, doi. 10.1093/nar/gkz1108

By:

Magnus, Marcin;
Antczak, Maciej;
Zok, Tomasz;
Wiedemann, Jakub;
Lukasiak, Piotr;
Cao, Yang;
Bujnicki, Janusz M;
Westhof, Eric;
Szachniuk, Marta;
Miao, Zhichao

Publication type:

Article

Mechanism of conditional partner selectivity in MITF/TFE family transcription factors with a conserved coiled coil stammer motif.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 2, p. 934, doi. 10.1093/nar/gkz1104

By:

Pogenberg, Vivian;
Ballesteros-Álvarez, Josué;
Schober, Romana;
Sigvaldadóttir, Ingibjörg;
Obarska-Kosinska, Agnieszka;
Milewski, Morlin;
Schindl, Rainer;
Ögmundsdóttir, Margrét Helga;
Steingrímsson, Eiríkur;
Wilmanns, Matthias

Publication type:

Article

USP14 is a deubiquitinase for Ku70 and critical determinant of non-homologous end joining repair in autophagy and PTEN-deficient cells.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 2, p. 736, doi. 10.1093/nar/gkz1103

By:

Sharma, Arishya;
Alswillah, Turkeya;
Kapoor, Isha;
Debjani, Pal;
Willard, Belinda;
Summers, Matthew K;
Gong, Zihua;
Almasan, Alexandru

Publication type:

Article

Point mutations in topoisomerase I alter the mutation spectrum in E. coli and impact the emergence of drug resistance genotypes.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 2, p. 761, doi. 10.1093/nar/gkz1100

By:

Bachar, Amit;
Itzhaki, Elad;
Gleizer, Shmuel;
Shamshoom, Melina;
Milo, Ron;
Antonovsky, Niv

Publication type:

Article

High-resolution EPR distance measurements on RNA and DNA with the non-covalent Ǵ spin label.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 2, p. 924, doi. 10.1093/nar/gkz1096

By:

Heinz, Marcel;
Erlenbach, Nicole;
Stelzl, Lukas S;
Thierolf, Grace;
Kamble, Nilesh R;
Sigurdsson, Snorri Th;
Prisner, Thomas F;
Hummer, Gerhard

Publication type:

Article

The FMRP–MOV10 complex: a translational regulatory switch modulated by G-Quadruplexes.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 2, p. 862, doi. 10.1093/nar/gkz1092

By:

Kenny, Phillip J;
Kim, Miri;
Skariah, Geena;
Nielsen, Joshua;
Lannom, Monica C;
Ceman, Stephanie

Publication type:

Article

Atypical organizations and epistatic interactions of CRISPRs and cas clusters in genomes and their mobile genetic elements.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 2, p. 748, doi. 10.1093/nar/gkz1091

By:

Bernheim, Aude;
Bikard, David;
Touchon, Marie;
Rocha, Eduardo P C

Publication type:

Article

TFregulomeR reveals transcription factors' context-specific features and functions.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 2, p. e10, doi. 10.1093/nar/gkz1088

By:

Lin, Quy Xiao Xuan;
Thieffry, Denis;
Jha, Sudhakar;
Benoukraf, Touati

Publication type:

Article

Sharing DNA-binding information across structurally similar proteins enables accurate specificity determination.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 2, p. e9, doi. 10.1093/nar/gkz1087

By:

Wetzel, Joshua L;
Singh, Mona

Publication type:

Article

HaloTag-based conjugation of proteins to barcoding-oligonucleotides.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 2, p. e8, doi. 10.1093/nar/gkz1086

By:

Yazaki, Junshi;
Kawashima, Yusuke;
Ogawa, Taisaku;
Kobayashi, Atsuo;
Okoshi, Mayu;
Watanabe, Takashi;
Yoshida, Suguru;
Kii, Isao;
Egami, Shohei;
Amagai, Masayuki;
Hosoya, Takamitsu;
Shiroguchi, Katsuyuki;
Ohara, Osamu

Publication type:

Article

DNA barcoding reveals that injected transgenes are predominantly processed by homologous recombination in mouse zygote.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 2, p. 719, doi. 10.1093/nar/gkz1085

By:

Smirnov, Alexander;
Fishman, Veniamin;
Yunusova, Anastasia;
Korablev, Alexey;
Serova, Irina;
Skryabin, Boris V;
Rozhdestvensky, Timofey S;
Battulin, Nariman

Publication type:

Article

RiboVIEW: a computational framework for visualization, quality control and statistical analysis of ribosome profiling data.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 2, p. e7, doi. 10.1093/nar/gkz1074

By:

Legrand, Carine;
Tuorto, Francesca

Publication type:

Article

Identification of a novel structure-specific endonuclease AziN that contributes to the repair of azinomycin B-mediated DNA interstrand crosslinks.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 2, p. 709, doi. 10.1093/nar/gkz1067

By:

Chen, Xiaorong;
Sun, Yuedi;
Wang, Shan;
Ying, Kun;
Xiao, Le;
Liu, Kai;
Zuo, Xiuli;
He, Jing

Publication type:

Article

Oxidative damage diminishes mitochondrial DNA polymerase replication fidelity.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 2, p. 817, doi. 10.1093/nar/gkz1018

By:

Anderson, Andrew P;
Luo, Xuemei;
Russell, William;
Yin, Y Whitney

Publication type:

Article

DSS1 interacts with and stimulates RAD52 to promote the repair of DSBs.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 2, p. 694, doi. 10.1093/nar/gkz1052

By:

Stefanovie, Barbora;
Hengel, Sarah R;
Mlcouskova, Jarmila;
Prochazkova, Jana;
Spirek, Mario;
Nikulenkov, Fedor;
Nemecek, Daniel;
Koch, Brandon G;
Bain, Fletcher E;
Yu, Liping;
Spies, Maria;
Krejci, Lumir

Publication type:

Article

Ribosomal protein gene RPL9 variants can differentially impair ribosome function and cellular metabolism.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 2, p. 770, doi. 10.1093/nar/gkz1042

By:

Lezzerini, Marco;
Penzo, Marianna;
O'Donohue, Marie-Françoise;
Marques dos Santos Vieira, Carolina;
Saby, Manon;
Elfrink, Hyung L;
Diets, Illja J;
Hesse, Anne-Marie;
Couté, Yohann;
Gastou, Marc;
Nin-Velez, Alexandra;
Nikkels, Peter G J;
Olson, Alexandra N;
Zonneveld-Huijssoon, Evelien;
Jongmans, Marjolijn C J;
Zhang, GuangJun;
van Weeghel, Michel;
Houtkooper, Riekelt H;
Wlodarski, Marcin W;
Kuiper, Roland P

Publication type:

Article