Works matching IS 03051048 AND DT 2019 AND VI 47 AND IP 22

Results: 43

Targeted DNA methylation of neurodegenerative disease genes via homology directed repair.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 22, p. 11609, doi. 10.1093/nar/gkz979

By:

Cali, Christopher P;
Park, Daniel S;
Lee, Edward B

Publication type:

Article

Rapid in vitro production of single-stranded DNA.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 22, p. 11956, doi. 10.1093/nar/gkz998

By:

Minev, Dionis;
Guerra, Richard;
Kishi, Jocelyn Y;
Smith, Cory;
Krieg, Elisha;
Said, Khaled;
Hornick, Amanda;
Sasaki, Hiroshi M;
Filsinger, Gabriel;
Beliveau, Brian J;
Yin, Peng;
Church, George M;
Shih, William M

Publication type:

Article

FBXO47 regulates telomere-inner nuclear envelope integration by stabilizing TRF2 during meiosis.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 22, p. 11755, doi. 10.1093/nar/gkz992

By:

Hua, Rong;
Wei, Huafang;
Liu, Chao;
Zhang, Yue;
Liu, Siyu;
Guo, Yueshuai;
Cui, Yiqiang;
Zhang, Xin;
Guo, Xuejiang;
Li, Wei;
Liu, Mingxi

Publication type:

Article

Sulfur-centered hemi-bond radicals as active intermediates in S-DNA phosphorothioate oxidation.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 22, p. 11514, doi. 10.1093/nar/gkz987

By:

Jie, Jialong;
Xia, Ye;
Huang, Chun-Hua;
Zhao, Hongmei;
Yang, Chunfan;
Liu, Kunhui;
Song, Di;
Zhu, Ben-Zhan;
Su, Hongmei

Publication type:

Article

G-quadruplex structures trigger RNA phase separation.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 22, p. 11746, doi. 10.1093/nar/gkz978

By:

Zhang, Yueying;
Yang, Minglei;
Duncan, Susan;
Yang, Xiaofei;
Abdelhamid, Mahmoud A S;
Huang, Lin;
Zhang, Huakun;
Benfey, Philip N;
Waller, Zoë A E;
Ding, Yiliang

Publication type:

Article

Localization of Drosophila CENP-A to non-centromeric sites depends on the NuRD complex.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 22, p. 11589, doi. 10.1093/nar/gkz962

By:

Demirdizen, Engin;
Spiller-Becker, Matthias;
Förtsch, Arion;
Wilhelm, Alexander;
Corless, Samuel;
Bade, Debora;
Bergner, Andrea;
Hessling, Bernd;
Erhardt, Sylvia

Publication type:

Article

Human RAD51 paralogue RAD51C fosters repair of alkylated DNA by interacting with the ALKBH3 demethylase.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 22, p. 11729, doi. 10.1093/nar/gkz938

By:

Mohan, Monisha;
Akula, Deepa;
Dhillon, Arun;
Goyal, Arun;
Anindya, Roy

Publication type:

Article

Lamin A/C promotes DNA base excision repair.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 22, p. 11709, doi. 10.1093/nar/gkz912

By:

Maynard, Scott;
Keijzers, Guido;
Akbari, Mansour;
Ezra, Michael Ben;
Hall, Arnaldur;
Morevati, Marya;
Scheibye-Knudsen, Morten;
Gonzalo, Susana;
Bartek, Jiri;
Bohr, Vilhelm A

Publication type:

Article

Direct sequencing of RNA with MinION Nanopore: detecting mutations based on associations.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 22, p. e148, doi. 10.1093/nar/gkz907

By:

Harel, Noam;
Meir, Moran;
Gophna, Uri;
Stern, Adi

Publication type:

Article

Recruitment of Rec8, Pds5 and Rad61/Wapl to meiotic homolog pairing, recombination, axis formation and S-phase.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 22, p. 11691, doi. 10.1093/nar/gkz903

By:

Hong, Soogil;
Joo, Jeong H;
Yun, Hyeseon;
Kleckner, Nancy;
Kim, Keun P

Publication type:

Article

A nuclease-polymerase chain reaction enables amplification of probes used for capture-based DNA target enrichment.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 22, p. e147, doi. 10.1093/nar/gkz870

By:

Leong, Ka Wai;
Yu, Fangyan;
Adalsteinsson, Viktor A;
Reed, Sarah;
Gydush, Gregory;
Ladas, Ioannis;
Li, Jiang;
Tantisira, Kelan G;
Makrigiorgos, Gerassimos Mike

Publication type:

Article

Convolutional neural network model to predict causal risk factors that share complex regulatory features.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 22, p. e146, doi. 10.1093/nar/gkz868

By:

Lee, Taeyeop;
Sung, Min Kyung;
Lee, Seulkee;
Yang, Woojin;
Oh, Jaeho;
Kim, Jeong Yeon;
Hwang, Seongwon;
Ban, Hyo-Jeong;
Choi, Jung Kyoon

Publication type:

Article

High-yield fabrication of DNA and RNA constructs for single molecule force and torque spectroscopy experiments.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 22, p. e144, doi. 10.1093/nar/gkz851

By:

Papini, Flávia S;
Seifert, Mona;
Dulin, David

Publication type:

Article

Single molecule analysis of effects of non-canonical guide RNAs and specificity-enhancing mutations on Cas9-induced DNA unwinding.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 22, p. 11880, doi. 10.1093/nar/gkz1058

By:

Okafor, Ikenna C;
Singh, Digvijay;
Wang, Yanbo;
Jung, Minhee;
Wang, Haobo;
Mallon, John;
Bailey, Scott;
Lee, Jungjoon K;
Ha, Taekjip

Publication type:

Article

The mRNA repressor TRIM71 cooperates with Nonsense-Mediated Decay factors to destabilize the mRNA of CDKN1A/p21.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 22, p. 11861, doi. 10.1093/nar/gkz1057

By:

Torres-Fernández, Lucia A;
Jux, Bettina;
Bille, Maximilian;
Port, Yasmine;
Schneider, Karin;
Geyer, Matthias;
Mayer, Günter;
Kolanus, Waldemar

Publication type:

Article

Design and synthesis of pleated DNA origami nanotubes with adjustable diameters.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 22, p. 11963, doi. 10.1093/nar/gkz1056

By:

Berengut, Jonathan F;
Berengut, Julian C;
Doye, Jonathan P K;
Prešern, Domen;
Kawamoto, Akihiro;
Ruan, Juanfang;
Wainwright, Madeleine J;
Lee, Lawrence K

Publication type:

Article

Click-encoded rolling FISH for visualizing single-cell RNA polyadenylation and structures.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 22, p. e145, doi. 10.1093/nar/gkz852

By:

Chen, Feng;
Bai, Min;
Cao, Xiaowen;
Zhao, Yue;
Xue, Jing;
Zhao, Yongxi

Publication type:

Article

Systematic sequencing of chloroplast transcript termini from Arabidopsis thaliana reveals >200 transcription initiation sites and the extensive imprints of RNA-binding proteins and secondary structures.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 22, p. 11889, doi. 10.1093/nar/gkz1059

By:

Castandet, Benoît;
Germain, Arnaud;
Hotto, Amber M;
Stern, David B

Publication type:

Article

Recognition and processing of branched DNA substrates by Slx1–Slx4 nuclease.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 22, p. 11681, doi. 10.1093/nar/gkz842

By:

Gaur, Vineet;
Ziajko, Weronika;
Nirwal, Shivlee;
Szlachcic, Aleksandra;
Gapińska, Marta;
Nowotny, Marcin

Publication type:

Article

The unstructured linker arms of MutL enable GATC site incision beyond roadblocks during initiation of DNA mismatch repair.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 22, p. 11667, doi. 10.1093/nar/gkz834

By:

Mardenborough, Yannicka S N;
Nitsenko, Katerina;
Laffeber, Charlie;
Duboc, Camille;
Sahin, Enes;
Quessada-Vial, Audrey;
Winterwerp, Herrie H K;
Sixma, Titia K;
Kanaar, Roland;
Friedhoff, Peter;
Strick, Terence R;
Lebbink, Joyce H G

Publication type:

Article

Latent cellular analysis robustly reveals subtle diversity in large-scale single-cell RNA-seq data.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 22, p. e143, doi. 10.1093/nar/gkz826

By:

Cheng, Changde;
Easton, John;
Rosencrance, Celeste;
Li, Yan;
Ju, Bensheng;
Williams, Justin;
Mulder, Heather L;
Pang, Yakun;
Chen, Wenan;
Chen, Xiang

Publication type:

Article

Phosphorylation orchestrates the structural ensemble of the intrinsically disordered protein HMGA1a and modulates its DNA binding to the NFκB promoter.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 22, p. 11906, doi. 10.1093/nar/gkz614

By:

Kohl, Bastian;
Zhong, Xueyin;
Herrmann, Christian;
Stoll, Raphael

Publication type:

Article

Robustness by intrinsically disordered C-termini and translational readthrough.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 22, p. 11978, doi. 10.1093/nar/gkz1106

By:

Kleppe, April Snofrid;
Bornberg-Bauer, Erich

Publication type:

Article

Rational design of an XNA ligase through docking of unbound nucleic acids to toroidal proteins.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 22, p. 11976, doi. 10.1093/nar/gkz1090

By:

Vanmeert, Michiel;
Razzokov, Jamoliddin;
Mirza, Muhammad Usman;
Weeks, Stephen D;
Schepers, Guy;
Bogaerts, Annemie;
Rozenski, Jef;
Froeyen, Mathy;
Herdewijn, Piet;
Pinheiro, Vitor B;
Lescrinier, Eveline

Publication type:

Article

Structure–fluorescence activation relationships of a large Stokes shift fluorogenic RNA aptamer.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 22, p. 11538, doi. 10.1093/nar/gkz1084

By:

Steinmetzger, Christian;
Bessi, Irene;
Lenz, Ann-Kathrin;
Höbartner, Claudia

Publication type:

Article

A DNA aptamer for binding and inhibition of DNA methyltransferase 1.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 22, p. 11527, doi. 10.1093/nar/gkz1083

By:

Wang, Linlin;
Lee, Ju Yong;
Gao, Linfeng;
Yin, Jiekai;
Duan, Yaokai;
Jimenez, Luis A;
Adkins, Gary Brent;
Ren, Wendan;
Li, Linhui;
Fang, Jian;
Wang, Yinsheng;
Song, Jikui;
Zhong, Wenwan

Publication type:

Article

A pre-catalytic non-covalent step governs DNA polymerase β fidelity.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 22, p. 11839, doi. 10.1093/nar/gkz1076

By:

Alnajjar, Khadijeh S;
Krylov, Ivan S;
Negahbani, Amirsoheil;
Haratipour, Pouya;
Kashemirov, Boris A;
Huang, Ji;
Mahmoud, Mariam;
McKenna, Charles E;
Goodman, Myron F;
Sweasy, Joann B

Publication type:

Article

The changing paradigm of intron retention: regulation, ramifications and recipes.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 22, p. 11497, doi. 10.1093/nar/gkz1068

By:

Monteuuis, Geoffray;
Wong, Justin J L;
Bailey, Charles G;
Schmitz, Ulf;
Rasko, John E J

Publication type:

Article

Deficiency of mitoribosomal S10 protein affects translation and splicing in Arabidopsis mitochondria.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 22, p. 11790, doi. 10.1093/nar/gkz1069

By:

Kwasniak-Owczarek, Malgorzata;
Kazmierczak, Urszula;
Tomal, Artur;
Mackiewicz, Pawel;
Janska, Hanna

Publication type:

Article

A distinct class of eukaryotic MT-A70 methyltransferases maintain symmetric DNA N<sup>6</sup>-adenine methylation at the ApT dinucleotides as an epigenetic mark associated with transcription.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 22, p. 11771, doi. 10.1093/nar/gkz1053

By:

Wang, Yuanyuan;
Sheng, Yalan;
Liu, Yongqiang;
Zhang, Wenxin;
Cheng, Ting;
Duan, Lili;
Pan, Bo;
Qiao, Yu;
Liu, Yifan;
Gao, Shan

Publication type:

Article

Distinct CoREST complexes act in a cell-type-specific manner.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 22, p. 11649, doi. 10.1093/nar/gkz1050

By:

Mačinković, Igor;
Theofel, Ina;
Hundertmark, Tim;
Kovač, Kristina;
Awe, Stephan;
Lenz, Jonathan;
Forné, Ignasi;
Lamp, Boris;
Nist, Andrea;
Imhof, Axel;
Stiewe, Thorsten;
Renkawitz-Pohl, Renate;
Rathke, Christina;
Brehm, Alexander

Publication type:

Article

Atomic structures of the RNA end-healing 5′-OH kinase and 2′,3′-cyclic phosphodiesterase domains of fungal tRNA ligase: conformational switches in the kinase upon binding of the GTP phosphate donor.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 22, p. 11826, doi. 10.1093/nar/gkz1049

By:

Banerjee, Ankan;
Goldgur, Yehuda;
Schwer, Beate;
Shuman, Stewart

Publication type:

Article

Causal Inference Engine: a platform for directional gene set enrichment analysis and inference of active transcriptional regulators.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 22, p. 11563, doi. 10.1093/nar/gkz1046

By:

Farahmand, Saman;
O'Connor, Corey;
Macoska, Jill A;
Zarringhalam, Kourosh

Publication type:

Article

Epigenetic reader complexes of the human malaria parasite, Plasmodium falciparum.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 22, p. 11574, doi. 10.1093/nar/gkz1044

By:

Hoeijmakers, Wieteke Anna Maria;
Miao, Jun;
Schmidt, Sabine;
Toenhake, Christa Geeke;
Shrestha, Sony;
Venhuizen, Jeron;
Henderson, Rob;
Birnbaum, Jakob;
Ghidelli-Disse, Sonja;
Drewes, Gerard;
Cui, Liwang;
Stunnenberg, Hendrik Gerard;
Spielmann, Tobias;
Bártfai, Richárd

Publication type:

Article

Structures of 1:1 and 2:1 complexes of BMVC and MYC promoter G-quadruplex reveal a mechanism of ligand conformation adjustment for G4-recognition.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 22, p. 11931, doi. 10.1093/nar/gkz1015

By:

Liu, Wenting;
Lin, Clement;
Wu, Guanhui;
Dai, Jixun;
Chang, Ta-Chau;
Yang, Danzhou

Publication type:

Article

Incorporation and influence of Leishmania histone H3 in chromatin.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 22, p. 11637, doi. 10.1093/nar/gkz1040

By:

Dacher, Mariko;
Tachiwana, Hiroaki;
Horikoshi, Naoki;
Kujirai, Tomoya;
Taguchi, Hiroyuki;
Kimura, Hiroshi;
Kurumizaka, Hitoshi

Publication type:

Article

Exploring the interactions of short RNAs with the human 40S ribosomal subunit near the mRNA entry site by EPR spectroscopy.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 22, p. 11850, doi. 10.1093/nar/gkz1039

By:

Malygin, Alexey A;
Krumkacheva, Olesya A;
Graifer, Dmitri M;
Timofeev, Ivan O;
Ochkasova, Anastasia S;
Meschaninova, Maria I;
Venyaminova, Alya G;
Fedin, Matvey V;
Bowman, Michael;
Karpova, Galina G;
Bagryanskaya, Elena G

Publication type:

Article

Super-enhancers in transcriptional regulation and genome organization.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 22, p. 11481, doi. 10.1093/nar/gkz1038

By:

Wang, Xi;
Cairns, Murray J;
Yan, Jian

Publication type:

Article

Crystal structure of the EcoKMcrA N-terminal domain (NEco): recognition of modified cytosine bases without flipping.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 22, p. 11943, doi. 10.1093/nar/gkz1017

By:

Slyvka, Anton;
Zagorskaitė, Evelina;
Czapinska, Honorata;
Sasnauskas, Giedrius;
Bochtler, Matthias

Publication type:

Article

Loss of the ribosomal RNA methyltransferase NSUN5 impairs global protein synthesis and normal growth.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 22, p. 11807, doi. 10.1093/nar/gkz1043

By:

Heissenberger, Clemens;
Liendl, Lisa;
Nagelreiter, Fabian;
Gonskikh, Yulia;
Yang, Guohuan;
Stelzer, Elena M;
Krammer, Teresa L;
Micutkova, Lucia;
Vogt, Stefan;
Kreil, David P;
Sekot, Gerhard;
Siena, Emilio;
Poser, Ina;
Harreither, Eva;
Linder, Angela;
Ehret, Viktoria;
Helbich, Thomas H;
Grillari-Voglauer, Regina;
Jansen-Dürr, Pidder;
Koš, Martin

Publication type:

Article

A DNA G-quadruplex/i-motif hybrid.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 22, p. 11921, doi. 10.1093/nar/gkz1008

By:

Chu, Betty;
Zhang, Daoning;
Paukstelis, Paul J

Publication type:

Article

Retrotransposons spread potential cis-regulatory elements during mammary gland evolution.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 22, p. 11551, doi. 10.1093/nar/gkz1003

By:

Nishihara, Hidenori

Publication type:

Article

Histone lysine demethylase KDM4B regulates the alternative splicing of the androgen receptor in response to androgen deprivation.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 22, p. 11623, doi. 10.1093/nar/gkz1004

By:

Duan, Lingling;
Chen, Zhenhua;
Lu, Jun;
Liang, Yanping;
Wang, Ming;
Roggero, Carlos M;
Zhang, Qing-Jun;
Gao, Jason;
Fang, Yong;
Cao, Jiazheng;
Lu, Jian;
Zhao, Hongwei;
Dang, Andrew;
Pong, Rey-Chen;
Hernandez, Elizabeth;
Chang, Chun-Mien;
Hoang, David T;
Ahn, Jung-Mo;
Xiao, Guanghua;
Wang, Rui-tao

Publication type:

Article