Works matching IS 03051048 AND DT 2019 AND VI 47 AND IP 5

Results: 49

core genome m5 C methyltransferase JHP1050 (M.Hpy99III) plays an important role in orchestrating gene expression in Helicobacter pylori.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 5, p. 2336, doi. 10.1093/nar/gky1307

By:

Estibariz, Iratxe;
Overmann, Annemarie;
Ailloud, Florent;
Krebes, Juliane;
Josenhans, Christine;
Suerbaum, Sebastian

Publication type:

Article

conserved XPF:ERCC1-like Zip2:Spo16 complex controls meiotic crossover formation through structure-specific DNA binding.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 5, p. 2365, doi. 10.1093/nar/gky1273

By:

Arora, Kanika;
Corbett, Kevin D

Publication type:

Article

Codon stabilization coefficient as a metric to gain insights into mRNA stability and codon bias and their relationships with translation.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 5, p. 2216, doi. 10.1093/nar/gkz033

By:

Carneiro, Rodolfo L;
Requião, Rodrigo D;
Rossetto, Silvana;
Domitrovic, Tatiana;
Palhano, Fernando L

Publication type:

Article

C3P3-G1: first generation of a eukaryotic artificial cytoplasmic expression system.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 5, p. 2681, doi. 10.1093/nar/gkz069

By:

Jaïs, Philippe H;
Decroly, Etienne;
Jacquet, Eric;
Le Boulch, Marine;
Jaïs, Aurélien;
Jean-Jean, Olivier;
Eaton, Heather;
Ponien, Prishila;
Verdier, Fréderique;
Canard, Bruno;
Goncalves, Sergio;
Chiron, Stéphane;
Le Gall, Maude;
Mayeux, Patrick;
Shmulevitz, Maya

Publication type:

Article

Bias-minimized quantification of microRNA reveals widespread alternative processing and 3′ end modification.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 5, p. 2630, doi. 10.1093/nar/gky1293

By:

Kim, Haedong;
Kim, Jimi;
Kim, Kijun;
Chang, Hyeshik;
You, Kwontae;
Kim, V Narry

Publication type:

Article

y-ome defines the 35% of Escherichia coli genes that lack experimental evidence of function.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 5, p. 2446, doi. 10.1093/nar/gkz030

By:

Ghatak, Sankha;
King, Zachary A;
Sastry, Anand;
Palsson, Bernhard O

Publication type:

Article

Two-quartet kit* G-quadruplex is formed via double-stranded pre-folded structure.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 5, p. 2641, doi. 10.1093/nar/gky1269

By:

Kotar, Anita;
Rigo, Riccardo;
Sissi, Claudia;
Plavec, Janez

Publication type:

Article

Tudor protein Veneno assembles the ping-pong amplification complex that produces viral piRNAs in Aedes mosquitoes.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 5, p. 2546, doi. 10.1093/nar/gky1266

By:

Joosten, Joep;
Miesen, Pascal;
Taşköprü, Ezgi;
Pennings, Bas;
Jansen, Pascal W T C;
Huynen, Martijn A;
Vermeulen, Michiel;
Van Rij, Ronald P

Publication type:

Article

Transfer RNA demethylase ALKBH3 promotes cancer progression via induction of tRNA-derived small RNAs.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 5, p. 2533, doi. 10.1093/nar/gky1250

By:

Chen, Zhuojia;
Qi, Meijie;
Shen, Bin;
Luo, Guanzheng;
Wu, Yingmin;
Li, Jiexin;
Lu, Zhike;
Zheng, Zhong;
Dai, Qing;
Wang, Hongsheng

Publication type:

Article

Short tandem repeat stutter model inferred from direct measurement of in vitro stutter noise.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 5, p. 2436, doi. 10.1093/nar/gky1318

By:

Raz, Ofir;
Biezuner, Tamir;
Spiro, Adam;
Amir, Shiran;
Milo, Lilach;
Titelman, Alon;
Onn, Amos;
Chapal-Ilani, Noa;
Tao, Liming;
Marx, Tzipy;
Feige, Uriel;
Shapiro, Ehud

Publication type:

Article

structure of the SAM/SAH-binding riboswitch.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 5, p. 2654, doi. 10.1093/nar/gky1283

By:

Weickhmann, A Katharina;
Keller, Heiko;
Wurm, Jan P;
Strebitzer, Elisabeth;
Juen, Michael A;
Kremser, Johannes;
Weinberg, Zasha;
Kreutz, Christoph;
Duchardt-Ferner, Elke;
Wöhnert, Jens

Publication type:

Article

Systematic investigation of sequence requirements for DNA i-motif formation.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 5, p. 2177, doi. 10.1093/nar/gkz046

By:

Školáková, Petra;
Renčiuk, Daniel;
Palacký, Jan;
Krafčík, Daniel;
Dvořáková, Zuzana;
Kejnovská, Iva;
Bednářová, Klára;
Vorlíčková, Michaela

Publication type:

Article

SQuIRE reveals locus-specific regulation of interspersed repeat expression.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 5, p. e27, doi. 10.1093/nar/gky1301

By:

Yang, Wan R;
Ardeljan, Daniel;
Pacyna, Clarissa N;
Payer, Lindsay M;
Burns, Kathleen H

Publication type:

Article

Small nucleolar RNAs controlling rRNA processing in Trypanosoma brucei.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 5, p. 2609, doi. 10.1093/nar/gky1287

By:

Chikne, Vaibhav;
Shanmugha Rajan, K;
Shalev-Benami, Moran;
Decker, Kathryn;
Cohen-Chalamish, Smadar;
Madmoni, Hava;
Biswas, Viplov K;
Kumar Gupta, Sachin;
Doniger, Tirza;
Unger, Ron;
Tschudi, Christian;
Ullu, Elisabetta;
Michaeli, Shulamit

Publication type:

Article

TDP-43 regulates site-specific 2′- O -methylation of U1 and U2 snRNAs via controlling the Cajal body localization of a subset of C/D scaRNAs.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 5, p. 2487, doi. 10.1093/nar/gkz086

By:

Izumikawa, Keiichi;
Nobe, Yuko;
Ishikawa, Hideaki;
Yamauchi, Yoshio;
Taoka, Masato;
Sato, Ko;
Nakayama, Hiroshi;
Simpson, Richard J;
Isobe, Toshiaki;
Takahashi, Nobuhiro

Publication type:

Article

beRBP: binding estimation for human RNA-binding proteins.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 5, p. e26, doi. 10.1093/nar/gky1294

By:

Yu, Hui;
Wang, Jing;
Sheng, Quanhu;
Liu, Qi;
Shyr, Yu

Publication type:

Article

R-loop formation by dCas9 is mutagenic in Saccharomyces cerevisiae.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 5, p. 2389, doi. 10.1093/nar/gky1278

By:

Laughery, Marian F;
Mayes, Hannah C;
Pedroza, Ivan K;
Wyrick, John J

Publication type:

Article

Selection of self-priming molecular replicators.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 5, p. 2169, doi. 10.1093/nar/gkz044

By:

Park, Daechan;
Ellington, Andrew D;
Jung, Cheulhee

Publication type:

Article

role of SLX4 and its associated nucleases in DNA interstrand crosslink repair.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 5, p. 2377, doi. 10.1093/nar/gky1276

By:

Hoogenboom, Wouter S;
Boonen, Rick A C M;
Knipscheer, Puck

Publication type:

Article

RNase H sequence preferences influence antisense oligonucleotide efficiency.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 5, p. 2701, doi. 10.1093/nar/gkz065

By:

Kiełpiński, Łukasz J;
Hagedorn, Peter H;
Lindow, Morten;
Vinther, Jeppe

Publication type:

Article

RNA element discovery from germ cell to blastocyst.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 5, p. 2263, doi. 10.1093/nar/gky1223

By:

Estill, Molly S;
Hauser, Russ;
Krawetz, Stephen A

Publication type:

Article

Selective recognition of c-MYC Pu22 G-quadruplex by a fluorescent probe.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 5, p. 2190, doi. 10.1093/nar/gkz059

By:

Zhai, Qianqian;
Gao, Chao;
Ding, Jieqin;
Zhang, Yashu;
Islam, Barira;
Lan, Wenxian;
Hou, Haitao;
Deng, Hua;
Li, Jun;
Hu, Zhe;
Mohamed, Hany I;
Xu, Shengzhen;
Cao, Chunyang;
Haider, Shozeb M;
Wei, Dengguo

Publication type:

Article

Mitochondrial membrane-based initial separation of MIWI and MILI functions during pachytene piRNA biogenesis.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 5, p. 2594, doi. 10.1093/nar/gky1281

By:

Ding, Deqiang;
Liu, Jiali;
Dong, Kunzhe;
Melnick, Ashley F;
Latham, Keith E;
Chen, Chen

Publication type:

Article

Regulation of Rep helicase unwinding by an auto-inhibitory subdomain.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 5, p. 2523, doi. 10.1093/nar/gkz023

By:

Makurath, Monika A;
Whitley, Kevin D;
Nguyen, Binh;
Lohman, Timothy M;
Chemla, Yann R

Publication type:

Article

Optimization of ribosome profiling using low-input brain tissue from fragile X syndrome model mice.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 5, p. e25, doi. 10.1093/nar/gky1292

By:

Liu, Botao;
Molinaro, Gemma;
Shu, Huan;
Stackpole, Emily E;
Huber, Kimberly M;
Richter, Joel D

Publication type:

Article

network of eIF2β interactions with eIF1 and Met-tRNA i promotes accurate start codon selection by the translation preinitiation complex.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 5, p. 2574, doi. 10.1093/nar/gky1274

By:

Thakur, Anil;
Marler, Laura;
Hinnebusch, Alan G

Publication type:

Article

Bayesian inference of origin firing time distributions, origin interference and licencing probabilities from Next Generation Sequencing data.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 5, p. 2229, doi. 10.1093/nar/gkz094

By:

Bazarova, Alina;
Nieduszynski, Conrad A;
Akerman, Ildem;
Burroughs, Nigel J

Publication type:

Article

Matching tRNA modifications in humans to their known and predicted enzymes.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 5, p. 2143, doi. 10.1093/nar/gkz011

By:

de Crécy-Lagard, Valérie;
Boccaletto, Pietro;
Mangleburg, Carl G;
Sharma, Puneet;
Lowe, Todd M;
Leidel, Sebastian A;
Bujnicki, Janusz M

Publication type:

Article

Quantitative disclosure of DNA knot chirality by high-resolution 2D-gel electrophoresis.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 5, p. e29, doi. 10.1093/nar/gkz015

By:

Valdés, Antonio;
Martínez-García, Belén;
Segura, Joana;
Dyson, Sílvia;
Díaz-Ingelmo, Ofelia;
Roca, Joaquim

Publication type:

Article

ME-Class2 reveals context dependent regulatory roles for 5-hydroxymethylcytosine.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 5, p. e28, doi. 10.1093/nar/gkz001

By:

Schlosberg, Christopher E;
Wu, Dennis Y;
Gabel, Harrison W;
Edwards, John R

Publication type:

Article

Loss of RNA-binding protein GRSF1 activates mTOR to elicit a proinflammatory transcriptional program.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 5, p. 2472, doi. 10.1093/nar/gkz082

By:

Noh, Ji Heon;
Kim, Kyoung Mi;
Pandey, Poonam R;
Noren Hooten, Nicole;
Munk, Rachel;
Kundu, Gautam;
De, Supriyo;
Martindale, Jennifer L;
Yang, Xiaoling;
Evans, Michele K;
Abdelmohsen, Kotb;
Gorospe, Myriam

Publication type:

Article

LncBook: a curated knowledgebase of human long non-coding RNAs.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 5, p. 2699, doi. 10.1093/nar/gkz073

By:

Ma, Lina;
Cao, Jiabao;
Liu, Lin;
Du, Qiang;
Li, Zhao;
Zou, Dong;
Bajic, Vladimir B;
Zhang, Zhang

Publication type:

Article

LIM protein Ajuba recruits DBC1 and CBP/p300 to acetylate ERα and enhances ERα target gene expression in breast cancer cells.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 5, p. 2322, doi. 10.1093/nar/gky1306

By:

Xu, Beihui;
Li, Qi;
Chen, Ning;
Zhu, Chunxiao;
Meng, Qingrong;
Ayyanathan, Kasirajan;
Qian, Wenli;
Jia, Hao;
Wang, Jiamin;
Ni, Peihua;
Hou, Zhaoyuan

Publication type:

Article

MiRNA-891a-5p mediates HIV-1 Tat and KSHV Orf-K1 synergistic induction of angiogenesis by activating NF-κB signaling.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 5, p. 2700, doi. 10.1093/nar/gkz088

By:

Yao, Shuihong;
Hu, Minmin;
Hao, Tingting;
Li, Wan;
Xue, Xue;
Xue, Min;
Zhu, Xiaofei;
Zhou, Feng;
Qin, Di;
Yan, Qin;
Zhu, Jianzhong;
Gao, Shou-Jiang;
Lu, Chun

Publication type:

Article

Kinetic analysis of N -alkylaryl carboxamide hexitol nucleotides as substrates for evolved polymerases.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 5, p. 2160, doi. 10.1093/nar/gkz008

By:

Renders, Marleen;
Dumbre, Shrinivas;
Abramov, Mikhail;
Kestemont, Donaat;
Margamuljana, Lia;
Largy, Eric;
Cozens, Christopher;
Vandenameele, Julie;
Pinheiro, Vitor B;
Toye, Dominique;
Frère, Jean-Marie;
Herdewijn, Piet

Publication type:

Article

Isolation and genome-wide characterization of cellular DNA:RNA triplex structures.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 5, p. 2306, doi. 10.1093/nar/gky1305

By:

Sentürk Cetin, Nevcin;
Kuo, Chao-Chung;
Ribarska, Teodora;
Li, Ronghui;
Costa, Ivan G;
Grummt, Ingrid

Publication type:

Article

Intracellular selection of trans -cleaving hammerhead ribozymes.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 5, p. 2514, doi. 10.1093/nar/gkz018

By:

Huang, Xin;
Zhao, Yongyun;
Pu, Qinlin;
Liu, Getong;
Peng, Yan;
Wang, Fei;
Chen, Gangyi;
Sun, Meiling;
Du, Feng;
Dong, Juan;
Cui, Xin;
Tang, Zhuo;
Mo, Xianming

Publication type:

Article

Amino acid based de Bruijn graph algorithm for identifying complete coding genes from metagenomic and metatranscriptomic short reads.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 5, p. e30, doi. 10.1093/nar/gkz017

By:

Liu, Jiemeng;
Lian, Qichao;
Chen, Yamao;
Qi, Ji

Publication type:

Article

Insight into novel RNA-binding activities via large-scale analysis of lncRNA-bound proteome and IDH1-bound transcriptome.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 5, p. 2244, doi. 10.1093/nar/gkz032

By:

Liu, Lichao;
Li, Tong;
Song, Guang;
He, Qingxia;
Yin, Yafei;
Lu, J Yuyang;
Bi, Xianju;
Wang, Kaili;
Luo, Sai;
Chen, Yu-Sheng;
Yang, Ying;
Sun, Bao-Fa;
Yang, Yun-Gui;
Wu, Jiawei;
Zhu, Heng;
Shen, Xiaohua

Publication type:

Article

Identification of microRNA clusters cooperatively acting on epithelial to mesenchymal transition in triple negative breast cancer.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 5, p. 2205, doi. 10.1093/nar/gkz016

By:

Cantini, Laura;
Bertoli, Gloria;
Cava, Claudia;
Dubois, Thierry;
Zinovyev, Andrei;
Caselle, Michele;
Castiglioni, Isabella;
Barillot, Emmanuel;
Martignetti, Loredana

Publication type:

Article

H-NS uses an autoinhibitory conformational switch for environment-controlled gene silencing.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 5, p. 2666, doi. 10.1093/nar/gky1299

By:

Shahul Hameed, Umar F;
Liao, Chenyi;
Radhakrishnan, Anand K;
Huser, Franceline;
Aljedani, Safia S;
Zhao, Xiaochuan;
Momin, Afaque A;
Melo, Fernando A;
Guo, Xianrong;
Brooks, Claire;
Li, Yu;
Cui, Xuefeng;
Gao, Xin;
Ladbury, John E;
Jaremko, Łukasz;
Jaremko, Mariusz;
Li, Jianing;
Arold, Stefan T

Publication type:

Article

Histone demethylase KDM3A is required for enhancer activation of hippo target genes in colorectal cancer.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 5, p. 2349, doi. 10.1093/nar/gky1317

By:

Wang, Hui-Yi;
Long, Qiao-Yun;
Tang, Shan-Bo;
Xiao, Qiong;
Gao, Chuan;
Zhao, Quan-Yi;
Li, Qing-Lan;
Ye, Mei;
Zhang, Lei;
Li, Lian-Yun;
Wu, Min

Publication type:

Article

Engagement of DNA and H3K27me3 by the CBX8 chromodomain drives chromatin association.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 5, p. 2289, doi. 10.1093/nar/gky1290

By:

Connelly, Katelyn E;
Weaver, Tyler M;
Alpsoy, Aktan;
Gu, Brian X;
Musselman, Catherine A;
Dykhuizen, Emily C

Publication type:

Article

Dysregulation of the cohesin subunit RAD21 by Hepatitis C virus mediates host–virus interactions.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 5, p. 2455, doi. 10.1093/nar/gkz052

By:

Perez, Shira;
Gevor, Michael;
Davidovich, Ateret;
Kaspi, Antony;
Yamin, Katreena;
Domovich, Tom;
Meirson, Tomer;
Matityahu, Avi;
Brody, Yehuda;
Stemmer, Salomon M;
El-Osta, Assam;
Haviv, Izhak;
Onn, Itay;
Gal-Tanamy, Meital

Publication type:

Article

Drosophila Sister-of-Sex-lethal reinforces a male-specific gene expression pattern by controlling Sex-lethal alternative splicing.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 5, p. 2276, doi. 10.1093/nar/gky1284

By:

Moschall, Rebecca;
Rass, Mathias;
Rossbach, Oliver;
Lehmann, Gerhard;
Kullmann, Lars;
Eichner, Norbert;
Strauss, Daniela;
Meister, Gunter;
Schneuwly, Stephan;
Krahn, Michael P;
Medenbach, Jan

Publication type:

Article

DNA polymerase η contributes to genome-wide lagging strand synthesis.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 5, p. 2425, doi. 10.1093/nar/gky1291

By:

Kreisel, Katrin;
Engqvist, Martin K M;
Kalm, Josephine;
Thompson, Liam J;
Boström, Martin;
Navarrete, Clara;
McDonald, John P;
Larsson, Erik;
Woodgate, Roger;
Clausen, Anders R

Publication type:

Article

DNA Ligase 1 is an essential mediator of sister chromatid telomere fusions in G2 cell cycle phase.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 5, p. 2402, doi. 10.1093/nar/gky1279

By:

Liddiard, Kate;
Ruis, Brian;
Kan, Yinan;
Cleal, Kez;
Ashelford, Kevin E;
Hendrickson, Eric A;
Baird, Duncan M

Publication type:

Article

Determining the effects of DNA sequence on Hel308 helicase translocation along single-stranded DNA using nanopore tweezers.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 5, p. 2506, doi. 10.1093/nar/gkz004

By:

Craig, Jonathan M;
Laszlo, Andrew H;
Nova, Ian C;
Brinkerhoff, Henry;
Noakes, Matthew T;
Baker, Katherine S;
Bowman, Jasmine L;
Higinbotham, Hugh R;
Mount, Jonathan W;
Gundlach, Jens H

Publication type:

Article

Alternative 3′ UTRs direct localization of functionally diverse protein isoforms in neuronal compartments.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 5, p. 2560, doi. 10.1093/nar/gky1270

By:

Ciolli Mattioli, Camilla;
Rom, Aviv;
Franke, Vedran;
Imami, Koshi;
Arrey, Gerard;
Terne, Mandy;
Woehler, Andrew;
Akalin, Altuna;
Ulitsky, Igor;
Chekulaeva, Marina

Publication type:

Article