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DeepRibo: a neural network for precise gene annotation of prokaryotes by combining ribosome profiling signal and binding site patterns.
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- Nucleic Acids Research, 2019, v. 47, n. 6, p. e36, doi. 10.1093/nar/gkz061
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CtIP-BRCA1 complex and MRE11 maintain replication forks in the presence of chain terminating nucleoside analogs.
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- Nucleic Acids Research, 2019, v. 47, n. 6, p. 2966, doi. 10.1093/nar/gkz009
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Conformational changes and catalytic inefficiency associated with Mot1-mediated TBP–DNA dissociation.
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- Nucleic Acids Research, 2019, v. 47, n. 6, p. 2793, doi. 10.1093/nar/gky1322
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Chromatin organization modulates the origin of heritable structural variations in human genome.
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- Nucleic Acids Research, 2019, v. 47, n. 6, p. 2766, doi. 10.1093/nar/gkz103
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Cationic porphyrins with large side arm substituents as resonance light scattering ratiometric probes for specific recognition of nucleic acid G-quadruplexes.
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- Nucleic Acids Research, 2019, v. 47, n. 6, p. 2727, doi. 10.1093/nar/gkz064
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Understanding the role of intermolecular interactions between lissoclimides and the eukaryotic ribosome.
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- Nucleic Acids Research, 2019, v. 47, n. 6, p. 3223, doi. 10.1093/nar/gkz053
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A versatile platform strain for high-fidelity multiplex genome editing.
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- Nucleic Acids Research, 2019, v. 47, n. 6, p. 3244, doi. 10.1093/nar/gkz085
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Three autoinducer molecules act in concert to control virulence gene expression in Vibrio cholerae.
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- Nucleic Acids Research, 2019, v. 47, n. 6, p. 3171, doi. 10.1093/nar/gky1320
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Targeted DNA oxidation and trajectory of radical DNA using DFT based QM/MM dynamics.
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- Nucleic Acids Research, 2019, v. 47, n. 6, p. 2757, doi. 10.1093/nar/gkz089
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Structural insights reveal the specific recognition of roX RNA by the dsRNA-binding domains of the RNA helicase MLE and its indispensable role in dosage compensation in Drosophila.
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- Nucleic Acids Research, 2019, v. 47, n. 6, p. 3142, doi. 10.1093/nar/gky1308
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Structural and functional analysis of the nucleotide and DNA binding activities of the human PIF1 helicase.
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- Nucleic Acids Research, 2019, v. 47, n. 6, p. 3208, doi. 10.1093/nar/gkz028
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Broad range of missense error frequencies in cellular proteins.
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- Nucleic Acids Research, 2019, v. 47, n. 6, p. 2932, doi. 10.1093/nar/gky1319
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SpyCLIP: an easy-to-use and high-throughput compatible CLIP platform for the characterization of protein–RNA interactions with high accuracy.
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- Nucleic Acids Research, 2019, v. 47, n. 6, p. e33, doi. 10.1093/nar/gkz049
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SMCHD1 is involved in de novo methylation of the DUX4-encoding D4Z4 macrosatellite.
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- Nucleic Acids Research, 2019, v. 47, n. 6, p. 2822, doi. 10.1093/nar/gkz005
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Single molecule glycosylase studies with engineered 8-oxoguanine DNA damage sites show functional defects of a MUTYH polyposis variant.
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- Nucleic Acids Research, 2019, v. 47, n. 6, p. 3058, doi. 10.1093/nar/gkz045
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Significant abundance of cis configurations of coding variants in diploid human genomes.
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- Nucleic Acids Research, 2019, v. 47, n. 6, p. 2981, doi. 10.1093/nar/gkz031
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Sas10 controls ribosome biogenesis by stabilizing Mpp10 and delivering the Mpp10–Imp3–Imp4 complex to nucleolus.
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- Nucleic Acids Research, 2019, v. 47, n. 6, p. 2996, doi. 10.1093/nar/gkz105
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SAMURAI (Solid-phase Assisted Mutagenesis by Uracil Restriction for Accurate Integration) for antibody affinity maturation and paratope mapping.
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- Nucleic Acids Research, 2019, v. 47, n. 6, p. e34, doi. 10.1093/nar/gkz050
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RNF20/40-mediated eEF1BδL monoubiquitylation stimulates transcription of heat shock-responsive genes.
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- Nucleic Acids Research, 2019, v. 47, n. 6, p. 2840, doi. 10.1093/nar/gkz006
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RNA surveillance by uridylation-dependent RNA decay in Schizosaccharomyces pombe.
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- Nucleic Acids Research, 2019, v. 47, n. 6, p. 3045, doi. 10.1093/nar/gkz043
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Requirement for PRC1 subunit BMI1 in host gene activation by Epstein–Barr virus protein EBNA3C.
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- Nucleic Acids Research, 2019, v. 47, n. 6, p. 2807, doi. 10.1093/nar/gky1323
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Reconstitution of the human SRP system and quantitative and systematic analysis of its ribosome interactions.
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- Nucleic Acids Research, 2019, v. 47, n. 6, p. 3184, doi. 10.1093/nar/gky1324
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Alternative conformation induced by substrate binding for Arabidopsis thalianaN<sup>6</sup>-methyl-AMP deaminase.
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- Nucleic Acids Research, 2019, v. 47, n. 6, p. 3233, doi. 10.1093/nar/gkz070
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RecFOR epistasis group: RecF and RecO have distinct localizations and functions in Escherichia coli.
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- Nucleic Acids Research, 2019, v. 47, n. 6, p. 2946, doi. 10.1093/nar/gkz003
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Plant organellar DNA polymerases repair double-stranded breaks by microhomology-mediated end-joining.
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- Nucleic Acids Research, 2019, v. 47, n. 6, p. 3028, doi. 10.1093/nar/gkz039
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The nuclear structural protein NuMA is a negative regulator of 53BP1 in DNA double-strand break repair.
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- Nucleic Acids Research, 2019, v. 47, n. 6, p. 2703, doi. 10.1093/nar/gkz138
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Long noncoding RNA MALAT1 releases epigenetic silencing of HIV-1 replication by displacing the polycomb repressive complex 2 from binding to the LTR promoter.
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- Nucleic Acids Research, 2019, v. 47, n. 6, p. 3013, doi. 10.1093/nar/gkz117
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ARGLU1 is a transcriptional coactivator and splicing regulator important for stress hormone signaling and development.
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- Nucleic Acids Research, 2019, v. 47, n. 6, p. 2856, doi. 10.1093/nar/gkz010
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Labelled regulatory elements are pervasive features of the macrophage genome and are dynamically utilized by classical and alternative polarization signals.
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- Nucleic Acids Research, 2019, v. 47, n. 6, p. 2778, doi. 10.1093/nar/gkz118
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Nuclear processing of nascent transcripts determines synthesis of full-length proteins and antigenic peptides.
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- Nucleic Acids Research, 2019, v. 47, n. 6, p. 3086, doi. 10.1093/nar/gky1296
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Magnesium controls aptamer-expression platform switching in the SAM-I riboswitch.
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- Nucleic Acids Research, 2019, v. 47, n. 6, p. 3158, doi. 10.1093/nar/gky1311
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The lyase activity of bifunctional DNA glycosylases and the 3′-diesterase activity of APE1 contribute to the repair of oxidized bases in nucleosomes.
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- Nucleic Acids Research, 2019, v. 47, n. 6, p. 2922, doi. 10.1093/nar/gky1315
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NextPBM: a platform to study cell-specific transcription factor binding and cooperativity.
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- Nucleic Acids Research, 2019, v. 47, n. 6, p. e31, doi. 10.1093/nar/gkz020
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Molecular basis for transfer RNA recognition by the double-stranded RNA-binding domain of human dihydrouridine synthase 2.
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- Nucleic Acids Research, 2019, v. 47, n. 6, p. 3117, doi. 10.1093/nar/gky1302
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Modulation of the ATM/autophagy pathway by a G-quadruplex ligand tips the balance between senescence and apoptosis in cancer cells.
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- Nucleic Acids Research, 2019, v. 47, n. 6, p. 2739, doi. 10.1093/nar/gkz095
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Human Survival Motor Neuron genes generate a vast repertoire of circular RNAs.
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- Nucleic Acids Research, 2019, v. 47, n. 6, p. 2884, doi. 10.1093/nar/gkz034
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High resolution discovery of chromatin interactions.
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- Nucleic Acids Research, 2019, v. 47, n. 6, p. e35, doi. 10.1093/nar/gkz051
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Hidden sequence specificity in loading of single-stranded RNAs onto Drosophila Argonautes.
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- Nucleic Acids Research, 2019, v. 47, n. 6, p. 3101, doi. 10.1093/nar/gky1300
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A guardian residue hinders insertion of a Fapy•dGTP analog by modulating the open-closed DNA polymerase transition.
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- Nucleic Acids Research, 2019, v. 47, n. 6, p. 3197, doi. 10.1093/nar/gkz002
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A genome-wide RNAi screen identifies the SMC5/6 complex as a non-redundant regulator of a Topo2a-dependent G2 arrest.
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- Nucleic Acids Research, 2019, v. 47, n. 6, p. 2906, doi. 10.1093/nar/gky1295
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The G3-U70-independent tRNA recognition by human mitochondrial alanyl-tRNA synthetase.
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- Nucleic Acids Research, 2019, v. 47, n. 6, p. 3072, doi. 10.1093/nar/gkz078
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Evidence for a bind-then-bend mechanism for architectural DNA binding protein yNhp6A.
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- Nucleic Acids Research, 2019, v. 47, n. 6, p. 2871, doi. 10.1093/nar/gkz022
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Does co-transcriptional regulation of alternative splicing mediate plant stress responses?
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- Nucleic Acids Research, 2019, v. 47, n. 6, p. 2716, doi. 10.1093/nar/gkz121
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Detection of RNA–DNA binding sites in long noncoding RNAs.
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- Nucleic Acids Research, 2019, v. 47, n. 6, p. e32, doi. 10.1093/nar/gkz037
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YB-1, an abundant core mRNA-binding protein, has the capacity to form an RNA nucleoprotein filament: a structural analysis.
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- Nucleic Acids Research, 2019, v. 47, n. 6, p. 3127, doi. 10.1093/nar/gky1303
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