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Toward predictive R-loop computational biology: genome-scale prediction of R-loops reveals their association with complex promoter structures, G-quadruplexes and transcriptionally active enhancers.
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- Nucleic Acids Research, 2018, v. 46, n. 15, p. 7566, doi. 10.1093/nar/gky554
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Allosterism and signal transfer in DNA.
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- Nucleic Acids Research, 2018, v. 46, n. 15, p. 7554, doi. 10.1093/nar/gky549
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Fast automated reconstruction of genome-scale metabolic models for microbial species and communities.
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- Nucleic Acids Research, 2018, v. 46, n. 15, p. 7542, doi. 10.1093/nar/gky537
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Dynamics of supercoiled DNA with complex knots: large-scale rearrangements and persistent multi-strand interlocking.
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- Nucleic Acids Research, 2018, v. 46, n. 15, p. 7533, doi. 10.1093/nar/gky523
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Real-time monitoring of DNA G-quadruplexes in living cells with a small-molecule fluorescent probe.
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- Nucleic Acids Research, 2018, v. 46, n. 15, p. 7522, doi. 10.1093/nar/gky665
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Synthetic switch-based baculovirus for transgene expression control and selective killing of hepatocellular carcinoma cells.
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- Nucleic Acids Research, 2018, v. 46, n. 15, p. e93, doi. 10.1093/nar/gky447
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Development of the variant calling algorithm, ADIScan, and its use to estimate discordant sequences between monozygotic twins.
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- Nucleic Acids Research, 2018, v. 46, n. 15, p. e92, doi. 10.1093/nar/gky445
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peakC: a flexible, non-parametric peak calling package for 4C and Capture-C data.
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- Nucleic Acids Research, 2018, v. 46, n. 15, p. e91, doi. 10.1093/nar/gky443
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Implementation of the CRISPR-Cas13a system in fission yeast and its repurposing for precise RNA editing.
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- Nucleic Acids Research, 2018, v. 46, n. 15, p. e90, doi. 10.1093/nar/gky433
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CancerDetector: ultrasensitive and non-invasive cancer detection at the resolution of individual reads using cell-free DNA methylation sequencing data.
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- Nucleic Acids Research, 2018, v. 46, n. 15, p. e89, doi. 10.1093/nar/gky423
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Two are better than one: HPoxBS - hairpin oxidative bisulfite sequencing.
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- Nucleic Acids Research, 2018, v. 46, n. 15, p. e88, doi. 10.1093/nar/gky422
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- Article
Toward predictive R-loop computational biology: genome-scale prediction of R-loops reveals their association with complex promoter structures, G-quadruplexes and transcriptionally active enhancers.
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- Nucleic Acids Research, 2018, v. 46, n. 15, p. 8023, doi. 10.1093/nar/gky690
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- Article
Structure of the bifunctional cryptochrome aCRY from Chlamydomonas reinhardtii.
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- Nucleic Acids Research, 2018, v. 46, n. 15, p. 8010, doi. 10.1093/nar/gky621
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Incorporating uracil and 5-halouracils into short peptide nucleic acids for enhanced recognition of A–U pairs in dsRNAs.
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- Nucleic Acids Research, 2018, v. 46, n. 15, p. 7506, doi. 10.1093/nar/gky631
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The temperature dependence of the helical twist of DNA.
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- Nucleic Acids Research, 2018, v. 46, n. 15, p. 7998, doi. 10.1093/nar/gky599
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Identification of receptors for UNCG and GNRA Z-turns and their occurrence in rRNA.
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- Nucleic Acids Research, 2018, v. 46, n. 15, p. 7989, doi. 10.1093/nar/gky578
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Snapshots of an evolved DNA polymerase pre- and post-incorporation of an unnatural nucleotide.
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- Nucleic Acids Research, 2018, v. 46, n. 15, p. 7977, doi. 10.1093/nar/gky552
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Group I introns are widespread in archaea.
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- Nucleic Acids Research, 2018, v. 46, n. 15, p. 7970, doi. 10.1093/nar/gky414
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Bidirectional regulation of adenosine-to-inosine (A-to-I) RNA editing by DEAH box helicase 9 (DHX9) in cancer.
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- Nucleic Acids Research, 2018, v. 46, n. 15, p. 7953, doi. 10.1093/nar/gky396
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Blocking of an intronic splicing silencer completely rescues IKBKAP exon 20 splicing in familial dysautonomia patient cells.
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- Nucleic Acids Research, 2018, v. 46, n. 15, p. 7938, doi. 10.1093/nar/gky395
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Stability of local secondary structure determines selectivity of viral RNA chaperones.
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- Nucleic Acids Research, 2018, v. 46, n. 15, p. 7924, doi. 10.1093/nar/gky394
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Novel diagnostic tool for prediction of variant spliceogenicity derived from a set of 395 combined in silico/in vitro studies: an international collaborative effort.
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- Nucleic Acids Research, 2018, v. 46, n. 15, p. 7913, doi. 10.1093/nar/gky372
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The methyltransferase domain of the Sudan ebolavirus L protein specifically targets internal adenosines of RNA substrates, in addition to the cap structure.
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- Nucleic Acids Research, 2018, v. 46, n. 15, p. 7902, doi. 10.1093/nar/gky637
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Mechanisms of template handling and pseudoknot folding in human telomerase and their manipulation to expand the sequence repertoire of processive repeat synthesis.
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- Nucleic Acids Research, 2018, v. 46, n. 15, p. 7886, doi. 10.1093/nar/gky601
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Time-lapse imaging of molecular evolution by high-throughput sequencing.
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- Nucleic Acids Research, 2018, v. 46, n. 15, p. 7480, doi. 10.1093/nar/gky583
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Escherichia coli ItaT is a type II toxin that inhibits translation by acetylating isoleucyl-tRNAIle.
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- Nucleic Acids Research, 2018, v. 46, n. 15, p. 7873, doi. 10.1093/nar/gky560
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A conserved loop–wedge motif moderates reaction site search and recognition by FEN1.
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- Nucleic Acids Research, 2018, v. 46, n. 15, p. 7858, doi. 10.1093/nar/gky506
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Inherited disorders of cobalamin metabolism disrupt nucleocytoplasmic transport of mRNA through impaired methylation/phosphorylation of ELAVL1/HuR.
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- Nucleic Acids Research, 2018, v. 46, n. 15, p. 7844, doi. 10.1093/nar/gky634
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Conditional accumulation of toxic tRNAs to cause amino acid misincorporation.
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- Nucleic Acids Research, 2018, v. 46, n. 15, p. 7831, doi. 10.1093/nar/gky623
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The ribosomal stalk protein is crucial for the action of the conserved ATPase ABCE1.
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- Nucleic Acids Research, 2018, v. 46, n. 15, p. 7820, doi. 10.1093/nar/gky619
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Single molecule tracking reveals that the bacterial SMC complex moves slowly relative to the diffusion of the chromosome.
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- Nucleic Acids Research, 2018, v. 46, n. 15, p. 7805, doi. 10.1093/nar/gky581
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Performance evaluation of pathogenicity-computation methods for missense variants.
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- Nucleic Acids Research, 2018, v. 46, n. 15, p. 7793, doi. 10.1093/nar/gky678
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A coding and non-coding transcriptomic perspective on the genomics of human metabolic disease.
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- Nucleic Acids Research, 2018, v. 46, n. 15, p. 7772, doi. 10.1093/nar/gky570
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Trypanosoma brucei UMSBP2 is a single-stranded telomeric DNA binding protein essential for chromosome end protection.
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- Nucleic Acids Research, 2018, v. 46, n. 15, p. 7757, doi. 10.1093/nar/gky597
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The transcription-coupled DNA repair-initiating protein CSB promotes XRCC1 recruitment to oxidative DNA damage.
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- Nucleic Acids Research, 2018, v. 46, n. 15, p. 7747, doi. 10.1093/nar/gky579
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Preparation and characterization of manganese, cobalt and zinc DNA nanoflowers with tuneable morphology, DNA content and size.
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- Nucleic Acids Research, 2018, v. 46, n. 15, p. 7495, doi. 10.1093/nar/gky630
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Nucleoporin 54 contributes to homologous recombination repair and post-replicative DNA integrity.
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- Nucleic Acids Research, 2018, v. 46, n. 15, p. 7731, doi. 10.1093/nar/gky569
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Histone H1 acetylation at lysine 85 regulates chromatin condensation and genome stability upon DNA damage.
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- Nucleic Acids Research, 2018, v. 46, n. 15, p. 7716, doi. 10.1093/nar/gky568
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Chromosomal over-replication in Escherichia coli recG cells is triggered by replication fork fusion and amplified if replichore symmetry is disturbed.
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- Nucleic Acids Research, 2018, v. 46, n. 15, p. 7701, doi. 10.1093/nar/gky566
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The RNA helicase DDX17 controls the transcriptional activity of REST and the expression of proneural microRNAs in neuronal differentiation.
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- Nucleic Acids Research, 2018, v. 46, n. 15, p. 7686, doi. 10.1093/nar/gky545
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Histone H2A variants confer specific properties to nucleosomes and impact on chromatin accessibility.
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- Nucleic Acids Research, 2018, v. 46, n. 15, p. 7675, doi. 10.1093/nar/gky540
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EVI1 carboxy-terminal phosphorylation is ATM-mediated and sustains transcriptional modulation and self-renewal via enhanced CtBP1 association.
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- Nucleic Acids Research, 2018, v. 46, n. 15, p. 7662, doi. 10.1093/nar/gky536
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Post-transcriptional regulation of Pabpn1 by the RNA binding protein HuR.
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- Nucleic Acids Research, 2018, v. 46, n. 15, p. 7643, doi. 10.1093/nar/gky535
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Effects of histone H2B ubiquitylation on the nucleosome structure and dynamics.
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- Nucleic Acids Research, 2018, v. 46, n. 15, p. 7631, doi. 10.1093/nar/gky526
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Casein kinase 2 mediated phosphorylation of Spt6 modulates histone dynamics and regulates spurious transcription.
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- Nucleic Acids Research, 2018, v. 46, n. 15, p. 7612, doi. 10.1093/nar/gky515
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Mechanistic insights into the regulation of transcription and transcription-coupled DNA repair by Cockayne syndrome protein B.
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- Nucleic Acids Research, 2018, v. 46, n. 15, p. 7471, doi. 10.1093/nar/gky660
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Integrating Rio1 activities discloses its nutrient-activated network in Saccharomyces cerevisiae.
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- Nucleic Acids Research, 2018, v. 46, n. 15, p. 7586, doi. 10.1093/nar/gky618
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