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Function, dynamics and evolution of network motif modules in integrated gene regulatory networks of worm and plant.
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- Nucleic Acids Research, 2018, v. 46, n. 13, p. 6480, doi. 10.1093/nar/gky468
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- Article
Zinc finger proteins orchestrate active gene silencing during embryonic stem cell differentiation.
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- Nucleic Acids Research, 2018, v. 46, n. 13, p. 6592, doi. 10.1093/nar/gky454
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Variation in human chromosome 21 ribosomal RNA genes characterized by TAR cloning and long-read sequencing.
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- Nucleic Acids Research, 2018, v. 46, n. 13, p. 6712, doi. 10.1093/nar/gky442
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Transfer-matrix calculations of the effects of tension and torque constraints on DNA–protein interactions.
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- Nucleic Acids Research, 2018, v. 46, n. 13, p. 6504, doi. 10.1093/nar/gky478
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A survey of recent unusual high-resolution DNA structures provoked by mismatches, repeats and ligand binding.
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- Nucleic Acids Research, 2018, v. 46, n. 13, p. 6416, doi. 10.1093/nar/gky561
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Structure of HIV TAR in complex with a Lab-Evolved RRM provides insight into duplex RNA recognition and synthesis of a constrained peptide that impairs transcription.
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- Nucleic Acids Research, 2018, v. 46, n. 13, p. 6401, doi. 10.1093/nar/gky529
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Structure and ligand binding of the SAM-V riboswitch.
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- Nucleic Acids Research, 2018, v. 46, n. 13, p. 6869, doi. 10.1093/nar/gky520
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Structural motifs in eIF4G and 4E-BPs modulate their binding to eIF4E to regulate translation initiation in yeast.
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- Nucleic Acids Research, 2018, v. 46, n. 13, p. 6893, doi. 10.1093/nar/gky542
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Structural and kinetic insights into stimulation of RppH-dependent RNA degradation by the metabolic enzyme DapF.
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- Nucleic Acids Research, 2018, v. 46, n. 13, p. 6841, doi. 10.1093/nar/gky327
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- Article
sRNA-dependent control of curli biosynthesis in Escherichia coli: McaS directs endonucleolytic cleavage of csgD mRNA.
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- Nucleic Acids Research, 2018, v. 46, n. 13, p. 6746, doi. 10.1093/nar/gky479
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A single-molecule sequencing assay for the comprehensive profiling of T4 DNA ligase fidelity and bias during DNA end-joining.
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- Nucleic Acids Research, 2018, v. 46, n. 13, p. e79, doi. 10.1093/nar/gky303
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- Article
RecBCD coordinates repair of two ends at a DNA double-strand break, preventing aberrant chromosome amplification.
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- Nucleic Acids Research, 2018, v. 46, n. 13, p. 6670, doi. 10.1093/nar/gky463
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The polyadenosine RNA-binding protein ZC3H14 interacts with the THO complex and coordinately regulates the processing of neuronal transcripts.
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- Nucleic Acids Research, 2018, v. 46, n. 13, p. 6561, doi. 10.1093/nar/gky446
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- Article
PHD finger protein 1 (PHF1) is a novel reader for histone H4R3 symmetric dimethylation and coordinates with PRMT5–WDR77/CRL4B complex to promote tumorigenesis.
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- Nucleic Acids Research, 2018, v. 46, n. 13, p. 6608, doi. 10.1093/nar/gky461
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An Orc1/Cdc6 ortholog functions as a key regulator in the DNA damage response in Archaea.
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- Nucleic Acids Research, 2018, v. 46, n. 13, p. 6697, doi. 10.1093/nar/gky487
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Multifactorial control of the expression of a CRISPR-Cas system by an extracytoplasmic function σ/anti-σ pair and a global regulatory complex.
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- Nucleic Acids Research, 2018, v. 46, n. 13, p. 6726, doi. 10.1093/nar/gky475
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In vitro reconstitution and analysis of eukaryotic RNase P RNPs.
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- Nucleic Acids Research, 2018, v. 46, n. 13, p. 6857, doi. 10.1093/nar/gky333
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Mechanism for de novo initiation at two sites in the respiratory syncytial virus promoter.
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- Nucleic Acids Research, 2018, v. 46, n. 13, p. 6785, doi. 10.1093/nar/gky480
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- Article
Intron-containing algal transgenes mediate efficient recombinant gene expression in the green microalga Chlamydomonas reinhardtii.
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- Nucleic Acids Research, 2018, v. 46, n. 13, p. 6909, doi. 10.1093/nar/gky532
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Introducing structure-switching functionality into small-molecule-binding aptamers via nuclease-directed truncation.
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- Nucleic Acids Research, 2018, v. 46, n. 13, p. e81, doi. 10.1093/nar/gky305
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An intricate balance of hydrogen bonding, ion atmosphere and dynamics facilitates a seamless uracil to cytosine substitution in the U-turn of the neomycin-sensing riboswitch.
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- Nucleic Acids Research, 2018, v. 46, n. 13, p. 6528, doi. 10.1093/nar/gky490
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Methylation of hypoxia-inducible factor (HIF)-1α by G9a/GLP inhibits HIF-1 transcriptional activity and cell migration.
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- Nucleic Acids Research, 2018, v. 46, n. 13, p. 6576, doi. 10.1093/nar/gky449
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How to create state-of-the-art genetic model systems: strategies for optimal CRISPR-mediated genome editing.
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- Nucleic Acids Research, 2018, v. 46, n. 13, p. 6435, doi. 10.1093/nar/gky571
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High-resolution RNA 3′-ends mapping of bacterial Rho-dependent transcripts.
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- Nucleic Acids Research, 2018, v. 46, n. 13, p. 6797, doi. 10.1093/nar/gky274
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High-resolution mapping of DNA polymerase fidelity using nucleotide imbalances and next-generation sequencing.
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- Nucleic Acids Research, 2018, v. 46, n. 13, p. e78, doi. 10.1093/nar/gky296
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HgII binds to C–T mismatches with high affinity.
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- Nucleic Acids Research, 2018, v. 46, n. 13, p. 6470, doi. 10.1093/nar/gky499
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Gyrase containing a single C-terminal domain catalyzes negative supercoiling of DNA by decreasing the linking number in steps of two.
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- Nucleic Acids Research, 2018, v. 46, n. 13, p. 6773, doi. 10.1093/nar/gky470
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Genome-wide mapping of the RNA targets of the Pseudomonas aeruginosa riboregulatory protein RsmN.
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- Nucleic Acids Research, 2018, v. 46, n. 13, p. 6823, doi. 10.1093/nar/gky324
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Genome-wide analysis of the spatiotemporal regulation of firing and dormant replication origins in human cells.
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- Nucleic Acids Research, 2018, v. 46, n. 13, p. 6683, doi. 10.1093/nar/gky476
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A functional type II-A CRISPR–Cas system from Listeria enables efficient genome editing of large non-integrating bacteriophage.
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- Nucleic Acids Research, 2018, v. 46, n. 13, p. 6920, doi. 10.1093/nar/gky544
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Formation of correlated chromatin domains at nanoscale dynamic resolution during transcription.
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- Nucleic Acids Research, 2018, v. 46, n. 13, p. e77, doi. 10.1093/nar/gky269
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Differences in silencing of mismatched targets by sliced versus diced siRNAs.
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- Nucleic Acids Research, 2018, v. 46, n. 13, p. 6806, doi. 10.1093/nar/gky287
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DapF stabilizes the substrate-favoring conformation of RppH to stimulate its RNA-pyrophosphohydrolase activity in Escherichia coli.
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- Nucleic Acids Research, 2018, v. 46, n. 13, p. 6880, doi. 10.1093/nar/gky528
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Cyclin-dependent kinase 1 activity coordinates the chromatin associated state of Oct4 during cell cycle in embryonic stem cells.
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- Nucleic Acids Research, 2018, v. 46, n. 13, p. 6544, doi. 10.1093/nar/gky371
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A CRISPR/molecular beacon hybrid system for live-cell genomic imaging.
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- Nucleic Acids Research, 2018, v. 46, n. 13, p. e80, doi. 10.1093/nar/gky304
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Coulomb and CH–π interactions in (6–4) photolyase–DNA complex dominate DNA binding and repair abilities.
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- Nucleic Acids Research, 2018, v. 46, n. 13, p. 6761, doi. 10.1093/nar/gky364
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Circular permutation profiling by deep sequencing libraries created using transposon mutagenesis.
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- Nucleic Acids Research, 2018, v. 46, n. 13, p. e76, doi. 10.1093/nar/gky255
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Base-excision repair deficiency alone or combined with increased oxidative stress does not increase mtDNA point mutations in mice.
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- Nucleic Acids Research, 2018, v. 46, n. 13, p. 6642, doi. 10.1093/nar/gky456
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The archaeal ATPase PINA interacts with the helicase Hjm via its carboxyl terminal KH domain remodeling and processing replication fork and Holliday junction.
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- Nucleic Acids Research, 2018, v. 46, n. 13, p. 6627, doi. 10.1093/nar/gky451
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5-Formylcytosine mediated DNA–protein cross-links block DNA replication and induce mutations in human cells.
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- Nucleic Acids Research, 2018, v. 46, n. 13, p. 6455, doi. 10.1093/nar/gky444
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