Works matching IS 03051048 AND DT 2017 AND VI 45 AND IP 18

Results: 50

Fidelity of RNA templated end-joining by chlorella virus DNA ligase and a novel iLock assay with improved direct RNA detection accuracy.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 18, p. e161, doi. 10.1093/nar/gkx708

By:

Krzywkowski, Tomasz;
Nilsson, Mats

Publication type:

Article

Entirely enzymatic nanofabrication of DNA–protein conjugates.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 18, p. e160, doi. 10.1093/nar/gkx707

By:

Bernardinelli, Giulio;
Högberg, Björn

Publication type:

Article

Neptune: a bioinformatics tool for rapid discovery of genomic variation in bacterial populations.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 18, p. e159, doi. 10.1093/nar/gkx702

By:

Marinier, Eric;
Zaheer, Rahat;
Berry, Chrystal;
Weedmark, Kelly A.;
Domaratzki, Michael;
Mabon, Philip;
Knox, Natalie C.;
Reimer, Aleisha R.;
Graham, Morag R.;
Chui, Linda;
Patterson-Fortin, Laura;
Jian Zhang;
Pagotto, Franco;
Farber, Jeff;
Mahony, Jim;
Seyer, Karine;
Bekal, Sadjia;
Tremblay, Cécile;
Isaac-Renton, Judy;
Prystajecky, Natalie

Publication type:

Article

Tandem phage-display for the identification of non-overlapping binding pairs of recombinant affinity reagents.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 18, p. e158, doi. 10.1093/nar/gkx688

By:

Gorman, Kevin T.;
Roby, Lauren C.;
Giuffre, Allison;
Renhua Huang;
Kay, Brian K.

Publication type:

Article

Novel cell surface luciferase reporter for high-throughput yeast one-hybrid screens.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 18, p. e157, doi. 10.1093/nar/gkx682

By:

Bonaldi, Katia;
Zheng Li;
Kang, S. Earl;
Breton, Ghislain;
Pruneda-Paz, Jose L.

Publication type:

Article

Corrigendum: Analysis of in vitro evolution reveals the underlying distribution of catalytic activity among random sequences.

Published in:: Nucleic Acids Research, 2017, v. 45, n. 18, p. 10922, doi. 10.1093/nar/gkx816
Publication type:: Article

Corrigendum: HH-MOTiF: de novo detection of short linear motifs in proteins by Hidden Markov Model comparisons.

Published in:: Nucleic Acids Research, 2017, v. 45, n. 18, p. 10921, doi. 10.1093/nar/gkx810
Publication type:: Article

Corrigendum: Producing irreversible topoisomerase II-mediated DNA breaks by site-specific Pt(II)-methionine coordination chemistry.

Published in:: Nucleic Acids Research, 2017, v. 45, n. 18, p. 10920, doi. 10.1093/nar/gkx806
Publication type:: Article

In silico design of context-responsive mammalian promoters with user-defined functionality.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 18, p. 10906, doi. 10.1093/nar/gkx768

By:

Brown, Adam J.;
Gibson, Suzanne J.;
Hatton, Diane;
James, David C.

Publication type:

Article

De novo design and synthesis of a 30-cistron translation-factor module.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 18, p. 10895, doi. 10.1093/nar/gkx753

By:

Shepherd, Tyson R.;
Liping Du;
Josefine Liljeruhm;
Samudyata;
Jinfan Wang;
Sjödin, Marcus O. D.;
Wetterhall, Magnus;
Tetsuya Yomo;
Forster, Anthony C.

Publication type:

Article

Structural insights into species-specific features of the ribosome from the human pathogen Mycobacterium tuberculosis.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 18, p. 10884, doi. 10.1093/nar/gkx785

By:

Kailu Yang;
Jeng-Yih Chang;
Zhicheng Cui;
Xiaojun Li;
Ran Meng;
Lijun Duan;
Thongchol, Jirapat;
Jakana, Joanita;
Huwe, Christoph M.;
Sacchettini, James C.;
Junjie Zhang

Publication type:

Article

The intricate network between the p34 and p44 subunits is central to the activity of the transcription/DNA repair factor TFIIH.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 18, p. 10872, doi. 10.1093/nar/gkx743

By:

Radu, Laura;
Schoenwetter, Elisabeth;
Braun, Cathy;
Marcoux, Julien;
Koelmel, Wolfgang;
Schmitt, Dominik R.;
Kuper, Jochen;
Cianférani, Sarah;
Egly, Jean M.;
Poterszman, Arnaud;
Kisker, Caroline

Publication type:

Article

Producing irreversible topoisomerase II-mediated DNA breaks by site-specific Pt(II)-methionine coordination chemistry.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 18, p. 10861, doi. 10.1093/nar/gkx742

By:

Ying-Ren Wang;
Shin-Fu Chen;
Chyuan-Chuan Wu;
Yi-Wen Liao;
Te-Sheng Lin;
Ko-Ting Liu;
Yi-Song Chen;
Tsai-Kun Li;
Tun-Cheng Chien;
Nei-Li Chan

Publication type:

Article

Structural insights into RapZ-mediated regulation of bacterial amino-sugar metabolism.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 18, p. 10845, doi. 10.1093/nar/gkx732

By:

Gonzalez, Grecia M.;
Durica-Mitic, Svetlana;
Hardwick, Steven W.;
Moncrieffe, Martin C.;
Resch, Marcus;
Neumann, Piotr;
Ficner, Ralf;
Görke, Boris;
Luisi, Ben F.

Publication type:

Article

Biochemical and single-molecule analyses of the RNA silencing suppressing activity of CrPV-1A.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 18, p. 10837, doi. 10.1093/nar/gkx748

By:

Mariko Watanabe;
Hiro-oki Iwakawa;
Hisashi Tadakuma;
Yukihide Tomari

Publication type:

Article

The Rio1p ATPase hinders premature entry into translation of late pre-40S pre-ribosomal particles.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 18, p. 10824, doi. 10.1093/nar/gkx734

By:

Belhabich-Baumas, Kamila;
Joret, Clément;
Jády, Beáta E.;
Plisson-Chastang, Célia;
Shayan, Ramtin;
Klopp, Christophe;
Henras, Anthony K.;
Henry, Yves;
Mougin, Annie

Publication type:

Article

Detection of 224 candidate structured RNAs by comparative analysis of specific subsets of intergenic regions.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 18, p. 10811, doi. 10.1093/nar/gkx699

By:

Weinberg, Zasha;
Lünse, Christina E.;
Corbino, Keith A.;
Ames, Tyler D.;
Nelson, James W.;
Roth, Adam;
Perkins, Kevin R.;
Sherlock, Madeline E.;
Breaker, Ronald R.

Publication type:

Article

CRISPR–Cas9-mediated functional dissection of 3′-UTRs.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 18, p. 10800, doi. 10.1093/nar/gkx675

By:

Wenxue Zhao;
Siegel, David;
Biton, Anne;
Le Tonqueze, Olivier;
Zaitlen, Noah;
Ahituv, Nadav;
Erle, David J.

Publication type:

Article

Small RNA profiling in Chlamydomonas: insights into chloroplast RNA metabolism.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 18, p. 10783, doi. 10.1093/nar/gkx668

By:

Cavaiuolo, Marina;
Kuras, Richard;
Wollman, Francis-André;
Choquet, Yves;
Vallon, Olivier

Publication type:

Article

Force-activated DNA substrates for probing individual proteins interacting with single-stranded DNA.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 18, p. 10775, doi. 10.1093/nar/gkx761

By:

Okoniewski, Stephen R.;
Uyetake, Lyle;
Perkins, Thomas T.

Publication type:

Article

Plant organellar DNA primase-helicase synthesizes RNA primers for organellar DNA polymerases using a unique recognition sequence.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 18, p. 10764, doi. 10.1093/nar/gkx745

By:

Peralta-Castro, Antolín;
Baruch-Torres, Noe;
Brieba, Luis G.

Publication type:

Article

Plant organellar DNA polymerases are replicative and translesion DNA synthesis polymerases.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 18, p. 10751, doi. 10.1093/nar/gkx744

By:

Baruch-Torres, Noe;
Brieba, Luis G.

Publication type:

Article

Allosteric regulation of Csx1, a type IIIB-associated CARF domain ribonuclease by RNAs carrying a tetraadenylate tail.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 18, p. 10740, doi. 10.1093/nar/gkx726

By:

Wenyuan Han;
Saifu Pan;
López-Méndez, Blanca;
Montoya, Guillermo;
Qunxin She

Publication type:

Article

RNA guanine-7 methyltransferase catalyzes the methylation of cytoplasmically recapped RNAs.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 18, p. 10726, doi. 10.1093/nar/gkx801

By:

Trotman, Jackson B.;
Giltmier, Andrew J.;
Mukherjee, Chandrama;
Schoenberg, Daniel R.

Publication type:

Article

Nuclear poly(A) binding protein 1 (PABPN1) and Matrin3 interact in muscle cells and regulate RNA processing.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 18, p. 10706, doi. 10.1093/nar/gkx786

By:

Banerjee, Ayan;
Vest, Katherine E.;
Pavlath, Grace K.;
Corbett, Anita H.

Publication type:

Article

The Cdc45/RecJ-like protein forms a complex with GINS and MCM, and is important for DNA replication in Thermococcus kodakarensis.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 18, p. 10693, doi. 10.1093/nar/gkx740

By:

Mariko Nagata;
Sonoko Ishino;
Takeshi Yamagami;
Hiromi Ogino;
Simons, Jan-Robert;
Tamotsu Kanai;
Haruyuki Atomi;
Yoshizumi Ishino

Publication type:

Article

Dynamic nucleoplasmic and nucleolar localization of mammalian RNase H1 in response to RNAP I transcriptional R-loops.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 18, p. 10672, doi. 10.1093/nar/gkx710

By:

Wen Shen;
Hong Sun;
De Hoyos, Cheryl L.;
Bailey, Jeffrey K.;
Xue-hai Liang;
Crooke, Stanley T.

Publication type:

Article

Nucleic acid binding proteins affect the subcellular distribution of phosphorothioate antisense oligonucleotides.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 18, p. 10649, doi. 10.1093/nar/gkx709

By:

Bailey, Jeffrey K.;
Wen Shen;
Xue-hai Liang;
Crooke, Stanley T.

Publication type:

Article

Genome-scale detection of positive selection in nine primates predicts human-virus evolutionary conflicts.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 18, p. 10634, doi. 10.1093/nar/gkx704

By:

van der Lee, Robin;
Wiel, Laurens;
van Dam, Teunis J. P.;
Huynen, Martijn A.

Publication type:

Article

H2AX facilitates classical non-homologous end joining at the expense of limited nucleotide loss at repair junctions.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 18, p. 10614, doi. 10.1093/nar/gkx715

By:

Yi-Li Feng;
Ji-Feng Xiang;
Si-Cheng Liu;
Tao Guo;
Guo-Fang Yan;
Ye Feng;
Na Kong;
Hao-Dan Li;
Yang Huang;
Hui Lin;
Xiu-Jun Cai;
An-Yong Xie

Publication type:

Article

Homeostatic nuclear RAGE-ATM interaction is essential for efficient DNA repair.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 18, p. 10595, doi. 10.1093/nar/gkx705

By:

Kumar, Varun;
Fleming, Thomas;
Terjung, Stefan;
Gorzelanny, Christian;
Gebhardt, Christoffer;
Agrawal, Raman;
Mall, Marcus A.;
Ranzinger, Julia;
Zeier, Martin;
Madhusudhan, Thati;
Ranjan, Satish;
Isermann, Berend;
Liesz, Arthur;
Deshpande, Divija;
Häring, Hans-Ulrich;
Biswas, Subrata K.;
Reynolds, Paul R.;
Hammes, Hans-Peter;
Peperkok, Rainer;
Angel, Peter

Publication type:

Article

Protein phosphatase 1 and phosphatase 1 nuclear targeting subunit-dependent regulation of DNA-dependent protein kinase and non-homologous end joining.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 18, p. 10583, doi. 10.1093/nar/gkx686

By:

Songli Zhu;
Fisher, Laura A.;
Bessho, Tadayoshi;
Aimin Peng

Publication type:

Article

Replication stress-induced endogenous DNA damage drives cellular senescence induced by a sub-lethal oxidative stress.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 18, p. 10564, doi. 10.1093/nar/gkx684

By:

Venkatachalam, Gireedhar;
Surana, Uttam;
Clément, Marie-Véronique

Publication type:

Article

Dynamic stepwise opening of integron attC DNA hairpins by SSB prevents toxicity and ensures functionality.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 18, p. 10555, doi. 10.1093/nar/gkx670

By:

Grieb, Maj Svea;
Nivina, Aleksandra;
Cheeseman, Bevan L.;
Hartmann, Andreas;
Mazel, Didier;
Schlierf, Michael

Publication type:

Article

CHD3 and CHD4 form distinct NuRD complexes with different yet overlapping functionality.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 18, p. 10534, doi. 10.1093/nar/gkx711

By:

Hoffmeister, Helen;
Fuchs, Andreas;
Erdel, Fabian;
Pinz, Sophia;
Gröbner-Ferreira, Regina;
Bruckmann, Astrid;
Deutzmann, Rainer;
Schwartz, Uwe;
Maldonado, Rodrigo;
Huber, Claudia;
Dendorfer, Anne-Sarah;
Rippe, Karsten;
Längst, Gernot

Publication type:

Article

The yeast 2-μm plasmid Raf protein contributes to plasmid inheritance by stabilizing the Rep1 and Rep2 partitioning proteins.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 18, p. 10518, doi. 10.1093/nar/gkx703

By:

McQuaid, Mary E.;
Pinder, Jordan B.;
Arumuggam, Niroshaathevi;
Lacoste, Jessica S. C.;
Chew, Joyce S. K.;
Dobson, Melanie J.

Publication type:

Article

Single-molecule kinetic analysis of HP1-chromatin binding reveals a dynamic network of histone modification and DNA interactions.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 18, p. 10504, doi. 10.1093/nar/gkx697

By:

Bryan, Louise C.;
Weilandt, Daniel R.;
Bachmann, Andreas L.;
Kilic, Sinan;
Lechner, Carolin C.;
Odermatt, Pascal D.;
Fantner, Georg E.;
Georgeon, Sandrine;
Hantschel, Oliver;
Hatzimanikatis, Vassily;
Fierz, Beat

Publication type:

Article

PARP1 controls KLF4-mediated telomerase expression in stem cells and cancer cells.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 18, p. 10492, doi. 10.1093/nar/gkx683

By:

Meng-Hsun Hsieh;
Yi-Ting Chen;
You-Tzung Chen;
Yi-Hsuan Lee;
Lu, Jean;
Chung-Liang Chien;
Hsin-Fu Chen;
Hong-Nerng Ho;
Chia-Jung Yu;
Zhao-Qi Wang;
Shu-Chun Teng

Publication type:

Article

A sequence-specific core promoter-binding transcription factor recruits TRF2 to coordinately transcribe ribosomal protein genes.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 18, p. 10481, doi. 10.1093/nar/gkx676

By:

Baumann, Douglas G.;
Gilmour, David S.

Publication type:

Article

Identification of Plagl1/Zac1 binding sites and target genes establishes its role in the regulation of extracellular matrix genes and the imprinted gene network.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 18, p. 10466, doi. 10.1093/nar/gkx672

By:

Varrault, Annie;
Dantec, Christelle;
Le Digarcher, Anne;
Chotard, Laëtitia;
Bilanges, Benoit;
Parrinello, Hugues;
Dubois, Emeric;
Rialle, Stéphanie;
Severac, Dany;
Bouschet, Tristan;
Journot, Laurent

Publication type:

Article

Fractionation iCLIP detects persistent SR protein binding to conserved, retained introns in chromatin, nucleoplasm and cytoplasm.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 18, p. 10452, doi. 10.1093/nar/gkx671

By:

Brugiolo, Mattia;
Botti, Valentina;
Na Liu;
Müller-McNicoll, Michaela;
Neugebauer, Karla M.

Publication type:

Article

An RNA editing/dsRNA binding-independent gene regulatory mechanism of ADARs and its clinical implication in cancer.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 18, p. 10436, doi. 10.1093/nar/gkx667

By:

Lihua Qi;
Yangyang Song;
Tim Hon Man Chan;
Henry Yang;
Chi Ho Lin;
Jin Tai Tay, Daryl;
HuiQi Hong;
Sze Jing Tang;
Kar Tong Tan;
Xi Xiao Huang;
Jaymie Siqi Lin;
Hui En Ng, Vanessa;
Pierre Maury, Julien Jean;
Tenen, Daniel G.;
Leilei Chen

Publication type:

Article

Gene-regulatory interactions in embryonic stem cells represent cell-type specific gene regulatory programs.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 18, p. 10428, doi. 10.1093/nar/gkx752

By:

Misook Ha;
Soondo Hong

Publication type:

Article

Functional 5′ UTR motif discovery with LESMoN: Local Enrichment of Sequence Motifs in biological Networks.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 18, p. 10415, doi. 10.1093/nar/gkx751

By:

Lavallée-Adam, Mathieu;
Cloutier, Philippe;
Coulombe, Benoit;
Blanchette, Mathieu

Publication type:

Article

Computational characterization of chromatin domain boundary-associated genomic elements.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 18, p. 10403, doi. 10.1093/nar/gkx738

By:

Seungpyo Hong;
Dongsup Kim

Publication type:

Article

MAPPIN: a method for annotating, predicting pathogenicity and mode of inheritance for nonsynonymous variants.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 18, p. 10393, doi. 10.1093/nar/gkx730

By:

Gosalia, Nehal;
Economides, Aris N.;
Dewey, Frederick E.;
Balasubramanian, Suganthi

Publication type:

Article

DNA mimics of red fluorescent proteins (RFP) based on G-quadruplex-confined synthetic RFP chromophores.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 18, p. 10380, doi. 10.1093/nar/gkx803

By:

Guangfu Feng;
Chao Luo;
Haibo Yi;
Lin Yuan;
Bin Lin;
Xingyu Luo;
Xiaoxiao Hu;
Honghui Wang;
Chunyang Lei;
Zhou Nie;
Shouzhuo Yao

Publication type:

Article

Dicer-independent processing of small RNA duplexes: mechanistic insights and applications.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 18, p. 10369, doi. 10.1093/nar/gkx779

By:

Herrera-Carrillo, Elena;
Berkhout, Ben

Publication type:

Article

Nuclear speckles: molecular organization, biological function and role in disease.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 18, p. 10350, doi. 10.1093/nar/gkx759

By:

Galganski, Lukasz;
Urbanek, Martyna O.;
Krzyzosiak, Wlodzimierz J.

Publication type:

Article

Subtelomeres constitute a safeguard for gene expression and chromosome homeostasis.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 18, p. 10333, doi. 10.1093/nar/gkx780

By:

Sanki Tashiro;
Yuki Nishihara;
Kazuto Kugou;
Kunihiro Ohta;
Junko Kanoh

Publication type:

Article