Works matching IS 03051048 AND DT 2017 AND VI 45 AND IP 12

Results: 53

Structural determinants of APOBEC3B non-catalytic domain for molecular assembly and catalytic regulation.

Published in:: Nucleic Acids Research, 2017, v. 45, n. 12, p. 7540, doi. 10.1093/nar/gkx564
Publication type:: Article

Enhancing multiplex genome editing by natural transformation (MuGENT) via inactivation of ssDNA exonucleases.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 12, p. 7527, doi. 10.1093/nar/gkx496

By:

Dalia, Triana N.;
Yoon, Soo Hun;
Galli, Elisa;
Barre, Francois-Xavier;
Waters, Christopher M.;
Dalia, Ankur B.

Publication type:

Article

Comprehensive classification of the PIN domain-like superfamily.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 12, p. 6995, doi. 10.1093/nar/gkx494

By:

Matelska, Dorota;
Steczkiewicz, Kamil;
Ginalski, Krzysztof

Publication type:

Article

Self-protective responses to norvaline-induced stress in a leucyl-tRNA synthetase editing-deficient yeast strain.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 12, p. 7367, doi. 10.1093/nar/gkx487

By:

Quan-Quan Ji;
Zhi-Peng Fang;
Qing Ye;
Cheng-Wu Chi;
En-Duo Wang

Publication type:

Article

Universal attenuators and their interactions with feedback loops in gene regulatory networks.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 12, p. 7078, doi. 10.1093/nar/gkx485

By:

Dianbo Liu;
Albergante, Luca;
Newman, Timothy J.

Publication type:

Article

eIF5A facilitates translation termination globally and promotes the elongation of many non polyproline-specific tripeptide sequences.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 12, p. 7326, doi. 10.1093/nar/gkx479

By:

Pelechano, Vicent;
Alepuz, Paula

Publication type:

Article

Genome-wide mRNA processing in methanogenic archaea reveals post-transcriptional regulation of ribosomal protein synthesis.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 12, p. 7285, doi. 10.1093/nar/gkx454

By:

Lei Qi;
Lei Yue;
Deqin Feng;
Fengxia Qi;
Jie Li;
Xiuzhu Dong

Publication type:

Article

DNA substrate recognition and processing by the full-length human UPF1 helicase.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 12, p. 7354, doi. 10.1093/nar/gkx478

By:

Dehghani-Tafti, Saba;
Sanders, Cyril M.

Publication type:

Article

Ribosomal selection of mRNAs with degenerate initiation triplets.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 12, p. 7309, doi. 10.1093/nar/gkx472

By:

He Chengguang;
Sabatini, Paola;
Brandi, Letizia;
Giuliodori, Anna M.;
Pon, Cynthia L.;
Gualerzi, Claudio O.

Publication type:

Article

Dynamics of sequestration-based gene regulatory cascades.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 12, p. 7515, doi. 10.1093/nar/gkx465

By:

Shopera, Tatenda;
Henson, William R.;
Tae Seok Moon

Publication type:

Article

Identifying transposon insertions and their effects from RNA-sequencing data.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 12, p. 7064, doi. 10.1093/nar/gkx461

By:

de Ruiter, Julian R.;
Kas, Sjors M.;
Schut, Eva;
Adams, David J.;
Koudijs, Marco J.;
Wessels, Lodewyk F. A.;
Jonkers, Jos

Publication type:

Article

Chemical ligation of oligonucleotides using an electrophilic phosphorothioester.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 12, p. 7042, doi. 10.1093/nar/gkx459

By:

Hideto Maruyama;
Ryota Oikawa;
Mayu Hayakawa;
Shono Takamori;
Yasuaki Kimura;
Naoko Abe;
Genichiro Tsuji;
Akira Matsuda;
Satoshi Shuto;
Yoshihiro Ito;
Hiroshi Abe

Publication type:

Article

Coiled-coil interactions mediate serine integrase directionality.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 12, p. 7339, doi. 10.1093/nar/gkx474

By:

Gupta, Kushol;
Sharp, Robert;
Yuan, Jimmy B.;
Huiguang Li;
Van Duyne, Gregory D.

Publication type:

Article

Not5-dependent co-translational assembly of Ada2 and Spt20 is essential for functional integrity of SAGA.

Published in:: Nucleic Acids Research, 2017, v. 45, n. 12, p. 7539, doi. 10.1093/nar/gkx447
Publication type:: Article

Replication studies of carboxymethylated DNA lesions in human cells.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 12, p. 7276, doi. 10.1093/nar/gkx442

By:

Jun Wu;
Pengcheng Wang;
Lin Li;
Williams, Nicole L.;
Ji, Debin;
Zahurancik, Walter J.;
Changjun You;
Jianshuang Wang;
Zucai Suo;
Yinsheng Wang

Publication type:

Article

An intact Mcm10 coiled-coil interaction surface is important for origin melting, helicase assembly and the recruitment of Pol-α to Mcm2-7.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 12, p. 7261, doi. 10.1093/nar/gkx438

By:

Perez-Arnaiz, Patricia;
Bruck, Irina;
Colbert, Max K.;
Kaplan, Daniel L.

Publication type:

Article

Translational control and Rho-dependent transcription termination are intimately linked in riboswitch regulation.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 12, p. 7474, doi. 10.1093/nar/gkx434

By:

Bastet, Laurène;
Chauvier, Adrien;
Singh, Navjot;
Lussier, Antony;
Lamontagne, Anne-Marie;
Prévost, Karine;
Massé, Eric;
Wade, Joseph T.;
Lafontaine, Daniel A.

Publication type:

Article

Compaction and condensation of DNA mediated by the C-terminal domain of Hfq.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 12, p. 7299, doi. 10.1093/nar/gkx431

By:

Malabirade, Antoine;
Kai Jiang;
Kubiak, Krzysztof;
Diaz-Mendoza, Alvaro;
Fan Liu;
van Kan, Jeroen A.;
Berret, Jean-François;
Arluison, Véronique;
van der Maarel, Johan R.C.

Publication type:

Article

Modulation of cyclobutane thymine photodimer formation in T<sub>11</sub>-tracts in rotationally phased nucleosome core particles and DNA minicircles.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 12, p. 7031, doi. 10.1093/nar/gkx427

By:

Kesai Wang;
Taylor, John-Stephen A.

Publication type:

Article

Implication of the box C/D snoRNP assembly factor Rsa1p in U3 snoRNP assembly.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 12, p. 7455, doi. 10.1093/nar/gkx424

By:

Rothé, Benjamin;
Manival, Xavier;
Rolland, Nicolas;
Charron, Christophe;
Senty-Ségault, Véronique;
Branlant, Christiane;
Charpentier, Bruno

Publication type:

Article

ChiPPI: a novel method for mapping chimeric protein-protein interactions uncovers selection principles of protein fusion events in cancer.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 12, p. 7094, doi. 10.1093/nar/gkx423

By:

Frenkel-Morgenstern, Milana;
Gorohovski, Alessandro;
Tagore, Somnath;
Sekar, Vaishnovi;
Vazquez, Miguel;
Valencia, Alfonso

Publication type:

Article

Functional characterization and architecture of recombinant yeast SWR1 histone exchange complex.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 12, p. 7249, doi. 10.1093/nar/gkx414

By:

Chia-Liang Lin;
Chaban, Yuriy;
Rees, David M.;
McCormack, Elizabeth A.;
Ocloo, Lorraine;
Wigley, Dale B.

Publication type:

Article

Madumycin II inhibits peptide bond formation by forcing the peptidyl transferase center into an inactive state.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 12, p. 7507, doi. 10.1093/nar/gkx413

By:

Osterman, Ilya A.;
Khabibullina, Nelli F.;
Komarova, Ekaterina S.;
Kasatsky, Pavel;
Kartsev, Victor G.;
Bogdanov, Alexey A.;
Dontsova, Olga A.;
Konevega, Andrey L.;
Sergiev, Petr V.;
Polikanov, Yury S.

Publication type:

Article

Protein-only RNase P function in Escherichia coli: viability, processing defects and differences between PRORP isoenzymes.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 12, p. 7441, doi. 10.1093/nar/gkx405

By:

Gößringer, Markus;
Lechner, Marcus;
Brillante, Nadia;
Weber, Christoph;
Rossmanith, Walter;
Hartmann, Roland K.

Publication type:

Article

The PhytoClust tool for metabolic gene clusters discovery in plant genomes.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 12, p. 7049, doi. 10.1093/nar/gkx404

By:

Töpfer, Nadine;
Fuchs, Lisa-Maria;
Aharoni, Asaph

Publication type:

Article

Two ribosome recruitment sites direct multiple translation events within HIV1 Gag open reading frame.

Published in:: Nucleic Acids Research, 2017, v. 45, n. 12, p. 7538, doi. 10.1093/nar/gkx401
Publication type:: Article

DNA synthesis determines the binding mode of the human mitochondrial single-stranded DNA-binding protein.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 12, p. 7237, doi. 10.1093/nar/gkx395

By:

Morin, José A.;
Cerrón, Fernando;
Jarillo, Javier;
Beltran-Heredia, Elena;
Ciesielski, Grzegorz L.;
Arias-Gonzalez, J. Ricardo;
Kaguni, Laurie S.;
Cao, Francisco J.;
Ibarra, Borja

Publication type:

Article

A novel double kink-turn module in euryarchaeal RNase P RNAs.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 12, p. 7432, doi. 10.1093/nar/gkx388

By:

Lai, Lien B.;
Tanimoto, Akiko;
Lai, Stella M.;
Chen, Wen-Yi;
Marathe, Ila A.;
Westhof, Eric;
Wysocki, Vicki H.;
Gopalan, Venkat

Publication type:

Article

Environment-dependent regulation of spliceosome activity by the LSM2-8 complex in Arabidopsis.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 12, p. 7416, doi. 10.1093/nar/gkx375

By:

Carrasco-L óopez, Cristian;
Hernández-Verdeja, Tamara;
Perea-Resa, Carlos;
Abia, David;
Catalá, Rafael;
Salinas, Julio

Publication type:

Article

Structural determinants of APOBEC3B non-catalytic domain for molecular assembly and catalytic regulation.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 12, p. 7494, doi. 10.1093/nar/gkx362

By:

Xiao, Xiao;
Yang, Hanjing;
Arutiunian, Vagan;
Fang, Yao;
Besse, Guillaume;
Morimoto, Cherie;
Zirkle, Brett;
Chen, Xiaojiang S.

Publication type:

Article

Two ribosome recruitment sites direct multiple translation events within HIV1 Gag open reading frame.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 12, p. 7382, doi. 10.1093/nar/gkx303

By:

Deforges, Jules;
de Breyne, Sylvain;
Ameur, Melissa;
Ulryck, Nathalie;
Chamond, Nathalie;
Saaidi, Afaf;
Ponty, Yann;
Ohlmann, Theophile;
Sargueil, Bruno

Publication type:

Article

ALKBH1 is an RNA dioxygenase responsible for cytoplasmic and mitochondrial tRNA modifications.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 12, p. 7401, doi. 10.1093/nar/gkx354

By:

Layla Kawarada;
Takeo Suzuki;
Takayuki Ohira;
Shoji Hirata;
Kenjyo Miyauchi;
Tsutomu Suzuki

Publication type:

Article

A non-canonical site reveals the cooperative mechanisms of microRNA-mediated silencing.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 12, p. 7212, doi. 10.1093/nar/gkx340

By:

Flamand, Mathieu N.;
Gan, Hin Hark;
Mayya, Vinay K.;
Gunsalus, Kristin C.;
Duchaine, Thomas F.

Publication type:

Article

Synthetic mRNA devices that detect endogenous proteins and distinguish mammalian cells.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 12, p. 1, doi. 10.1093/nar/gkx298

By:

Shunsuke Kawasaki;
Yoshihiko Fujita;
Takashi Nagaike;
Kozo Tomita;
Hirohide Saito

Publication type:

Article

The 2-μm plasmid encoded protein Raf1 regulates both stability and copy number of the plasmid by blocking the formation of the Rep1-Rep2 repressor complex.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 12, p. 7167, doi. 10.1093/nar/gkx316

By:

Rizvi, Syed M. A.;
Prajapati, Hemant K.;
Nag, Purba;
Ghosh, Santanu K.

Publication type:

Article

Fbxl19 recruitment to CpG islands is required for Rnf20-mediated H2B mono-ubiquitination.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 12, p. 7151, doi. 10.1093/nar/gkx310

By:

Bum-Kyu Lee;
Jiwoon Lee;
Wenwen Shen;
Catherine Rhee;
Haewon Chung;
Jonghwan Kim

Publication type:

Article

In mammalian foetal testes, SOX9 regulates expression of its target genes by binding to genomic regions with conserved signatures.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 12, p. 7191, doi. 10.1093/nar/gkx328

By:

Rahmoun, Massilva;
Lavery, Rowena;
Laurent-Chaballier, Sabine;
Bellora, Nicolas;
Philip, Gayle K.;
Rossitto, Moïra;
Symon, Aleisha;
Pailhoux, Eric;
Cammas, Florence;
Jessica Chung;
Bagheri-Fam, Stefan;
Murphy, Mark;
Bardwell, Vivian;
Zarkower, David;
Boizet-Bonhoure, Brigitte;
Clair, Philippe;
Harley, Vincent R.;
Poulat, Francis

Publication type:

Article

Newly characterized interaction stabilizes DNA structure: oligoethylene glycols stabilize G-quadruplexes CH-π interactions.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 12, p. 7021, doi. 10.1093/nar/gkx299

By:

Hisae Tateishi-Karimata;
Tatsuya Ohyama;
Takahiro Muraoka;
Peter Podbevsek;
Wawro, Adam M.;
Shigenori Tanaka;
Shu-ichi Nakano;
Kazushi Kinbara;
Janez Plavec;
Naoki Sugimoto

Publication type:

Article

The ATP-dependent chromatin remodeler Chd1 is recruited by transcription elongation factors and maintains H3K4me3/H3K36me3 domains at actively transcribed and spliced genes.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 12, p. 7180, doi. 10.1093/nar/gkx321

By:

Yaelim Lee;
Park, Daechan;
Iyer, Vishwanath R.

Publication type:

Article

High-purity circular RNA isolation method (RPAD) reveals vast collection of intronic circRNAs.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 12, p. 1, doi. 10.1093/nar/gkx297

By:

Panda, Amaresh C.;
De, Supriyo;
Grammatikakis, Ioannis;
Munk, Rachel;
Xiaoling Yang;
Piao, Yulan;
Dudekula, Dawood B.;
Abdelmohsen, Kotb;
Gorospe, Myriam

Publication type:

Article

Using high-throughput barcode sequencing to efficiently map connectomes.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 12, p. 1, doi. 10.1093/nar/gkx292

By:

Peikon, Ian D.;
Kebschull, Justus M.;
Vagin, Vasily V.;
Ravens, Diana I.;
Yu-Chi Sun;
Brouzes, Eric;
Corrêa Jr., Ivan R.;
Bressan, Dario;
Zador, Anthony M.

Publication type:

Article

Gene set selection via LASSO penalized regression (SLPR).

Published in:

Nucleic Acids Research, 2017, v. 45, n. 12, p. 1, doi. 10.1093/nar/gkx291

By:

Frost, H. Robert;
Amos, Christopher I.

Publication type:

Article

Characterizing exogenous mRNA delivery, trafficking, cytoplasmic release and RNA-protein correlations at the level of single cells.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 12, p. 1, doi. 10.1093/nar/gkx290

By:

Kirschman, Jonathan L.;
Bhosle, Sushma;
Vanover, Daryll;
Blanchard, Emmeline L.;
Loomis, Kristin H.;
Zurla, Chiara;
Murray, Kathryn;
Lam, Blaine C.;
Santangelo, Philip J.

Publication type:

Article

Poly(A)-ClickSeq: click-chemistry for next-generation 3'-end sequencing without RNA enrichment or fragmentation.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 12, p. 1, doi. 10.1093/nar/gkx286

By:

Routh, Andrew;
Ji, Ping;
Jaworski, Elizabeth;
Zheng Xia;
Wei Li;
Wagner, Eric J.

Publication type:

Article

Identification of HDA15-PIF1 as a key repression module directing the transcriptional network of seed germination in the dark.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 12, p. 7137, doi. 10.1093/nar/gkx283

By:

Dachuan Gu;
Chia-Yang Chen;
Minglei Zhao;
Linmao Zhao;
Xuewu Duan;
Jun Duan;
Keqiang Wu;
Xuncheng Liu

Publication type:

Article

Methyl-CpG binding domain protein 1 regulates localization and activity of Tet1 in a CXXC3 domain-dependent manner.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 12, p. 7118, doi. 10.1093/nar/gkx281

By:

Peng Zhang;
Rausch, Cathia;
Hastert, Florian D.;
Boneva, Boyana;
Filatova, Alina;
Patil, Sujit J.;
Nuber, Ulrike A.;
Yu Gao;
Xinyu Zhao;
Cardoso, M. Cristina

Publication type:

Article

G-quadruplex structure of an anti-proliferative DNA sequence.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 12, p. 7487, doi. 10.1093/nar/gkx274

By:

Ngoc Quang Do;
Wan Jun Chung;
Thi Hong Anh Truong;
Heddi, Brahim;
Anh Tuân Phan

Publication type:

Article

A network of cis and trans interactions is required for ParB spreading.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 12, p. 7106, doi. 10.1093/nar/gkx271

By:

Dan Song;
Rodrigues, Kristen;
Graham, Thomas G.W.;
Loparo, Joseph J.

Publication type:

Article

TAREAN: a computational tool for identification and characterization of satellite DNA from unassembled short reads.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 12, p. 1, doi. 10.1093/nar/gkx257

By:

Novák, Petr;
Robledillo, LauraÁ vila;
Koblížková, Andrea;
Vrbová, Iva;
Neumann, Pavel;
Macas, Jiří

Publication type:

Article

SPA-LN: a scoring function of ligand-nucleic acid interactions via optimizing both specificity and affinity.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 12, p. 1, doi. 10.1093/nar/gkx255

By:

Zhiqiang Yan;
Jin Wang

Publication type:

Article