Works matching IS 03051048 AND DT 2017 AND VI 45 AND IP 10

Results: 69

Synthesis and polymerase activity of a fluorescent cytidine TNA triphosphate analogue.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 10, p. 5629, doi. 10.1093/nar/gkx368

By:

Hui Mei;
Changhua Shi;
Jimenez, Randi M.;
Yajun Wang;
Kardouh, Miramar;
Chaput, John C.

Publication type:

Article

Predicting transcription factor binding motifs from DNA-binding domains, chromatin accessibility and gene expression data.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 10, p. 5666, doi. 10.1093/nar/gkx358

By:

Zamanighomi, Mahdi;
Zhixiang Lin;
Yong Wang;
Rui Jiang;
Wing Hung Wong

Publication type:

Article

Exploring genetic associations with ceRNA regulation in the human genome.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 10, p. 5653, doi. 10.1093/nar/gkx331

By:

Mulin Jun Li;
Jian Zhang;
Qian Liang;
Chenghao Xuan;
Jiexing Wu;
Peng Jiang;
Wei Li;
Yun Zhu;
Panwen Wang;
Fernandez, Daniel;
Yujun Shen;
Yiwen Chen;
Kocher, Jean-Pierre A.;
Ying Yu;
Pak Chung Sham;
Junwen Wang;
Liu, Jun S.;
X. Shirley Liu

Publication type:

Article

Global miRNA expression analysis identifies novel key regulators of plasma cell differentiation and malignant plasma cell.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 10, p. 5639, doi. 10.1093/nar/gkx327

By:

Kassambara, Alboukadel;
Jourdan, Michel;
Bruyer, Angélique;
Robert, Nicolas;
Pantesco, Véronique;
Elemento, Olivier;
Klein, Bernard;
Moreaux, Jérôme

Publication type:

Article

Proteomic analysis of polyribosomes identifies splicing factors as potential regulators of translation during mitosis.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 10, p. 5945, doi. 10.1093/nar/gkx326

By:

Aviner, Ranen;
Hofmann, Sarah;
Elman, Tamar;
Shenoy, Anjana;
Geiger, Tamar;
Elkon, Ran;
Ehrlich, Marcelo;
Elroy-Stein, Orna

Publication type:

Article

Roles of the C-terminal domains of topoisomerase IIα and topoisomerase IIβ in regulation of the decatenation checkpoint.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 10, p. 5995, doi. 10.1093/nar/gkx325

By:

Kozuki, Toshiyuki;
Chikamori, Kenichi;
Surleac, Marius D.;
Micluta, Marius A.;
Petrescu, Andrei J.;
Norris, Eric J.;
Elson, Paul;
Hoeltge, Gerald A.;
Grabowski, Dale R.;
Porter, Andrew C. G.;
Ganapathi, Ram N.;
Ganapathi, Mahrukh K.

Publication type:

Article

Identification of miRNA-7 by genome-wide analysis as a critical sensitizer for TRAIL-induced apoptosis in glioblastoma cells.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 10, p. 5930, doi. 10.1093/nar/gkx317

By:

Xiao Zhang;
Xiang Zhang;
Shijie Hu;
Minhua Zheng;
Jie Zhang;
Jianhui Zhao;
Xiaofang Zhang;
Bo Yan;
Lintao Jia;
Jing Zhao;
Kaichun Wu;
Angang Yang;
Rui Zhang

Publication type:

Article

Expression of Concern: Guanine quadruplex structures localize to heterochromatin.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 10, p. 6253, doi. 10.1093/nar/gkx301

By:

Hoffmann, Roland F.;
Moshkin, Yuri M.;
Mouton, Stijn;
Grzeschik, Nicola A.;
Kalicharan, Ruby D.;
Kuipers, Jeroen;
Wolters, Anouk H. G.;
Nishida, Kazuki;
Romashchenko, Aleksander V.;
Postberg, Jan;
Lipps, Hans;
Berezikov, Eugene;
Sibon, Ody C. M.;
Giepmans, Ben N. G.;
Lansdorp, Peter M.

Publication type:

Article

Expression of Concern: Detection of G-quadruplex DNA in mammalian cells.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 10, p. 6252, doi. 10.1093/nar/gkx300

By:

Henderson, Alexander;
Yuliang Wu;
Yu Chuan Huang;
Chavez, Elizabeth A.;
Platt, Jesse;
Johnson, F. Brad;
Brosh, Robert M.;
Sen, Dipankar;
Lansdorp, Peter M.

Publication type:

Article

Downstream element determines RNase Y cleavage of the saePQRS operon in Staphylococcus aureus.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 10, p. 5980, doi. 10.1093/nar/gkx296

By:

Marincola, Gabriella;
Wolz, Christiane

Publication type:

Article

The dynamics of the monomeric restriction endonuclease BcnI during its interaction with DNA.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 10, p. 5968, doi. 10.1093/nar/gkx294

By:

Kostiuk, Georgij;
Dikić, Jasmina;
Schwarz, Friedrich W.;
Sasnauskas, Giedrius;
Seidel, Ralf;
Siksnys, Virginijus

Publication type:

Article

Probing the salt dependence of the torsional stiffness of DNA by multiplexed magnetic torque tweezers.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 10, p. 5920, doi. 10.1093/nar/gkx280

By:

Kriegel, Franziska;
Ermann, Niklas;
Forbes, Ruaridh;
Dulin, David;
Dekker, Nynke H.;
Lipfert, Jan

Publication type:

Article

Structural and functional characterization of the PNKP-XRCC4-LigIV DNA repair complex.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 10, p. 6238, doi. 10.1093/nar/gkx275

By:

Aceytuno, R. Daniel;
Piett, Cortt G.;
Havali-Shahriari, Zahra;
Edwards, Ross A.;
Rey, Martial;
Ruiqiong Ye;
Javed, Fatima;
Shujuan Fang;
Mani, Rajam;
Weinfeld, Michael;
Hammel, Michal;
Tainer, John A.;
Schriemer, David C.;
Lees-Miller, Susan P.;
Glover, J. N. Mark

Publication type:

Article

ORIO (Online Resource for Integrative Omics): a web-based platform for rapid integration of next generation sequencing data.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 10, p. 5678, doi. 10.1093/nar/gkx270

By:

Lavender, Christopher A.;
Shapiro, Andrew J.;
Burkholder, Adam B.;
Bennett, Brian D.;
Adelman, Karen;
Fargo, David C.

Publication type:

Article

A non-canonical multisubunit RNA polymerase encoded by the AR9 phage recognizes the template strand of its uracil-containing promoters.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 10, p. 5958, doi. 10.1093/nar/gkx264

By:

Sokolova, Maria;
Borukhov, Sergei;
Lavysh, Daria;
Artamonova, Tatjana;
Khodorkovskii, Mikhail;
Severinov, Konstantin

Publication type:

Article

DICER and ZRF1 contribute to chromatin decondensation during nucleotide excision repair.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 10, p. 5901, doi. 10.1093/nar/gkx261

By:

Chitale, Shalaka;
Richly, Holger

Publication type:

Article

Structural basis for the D-stereoselectivity of human DNA polymerase β.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 10, p. 6228, doi. 10.1093/nar/gkx252

By:

Vyas, Rajan;
Reed, Andrew J.;
Raper, Austin T.;
Zahurancik, Walter J.;
Wallenmeyer, Petra C.;
Suo, Zucai

Publication type:

Article

Guanine quadruplex monoclonal antibody 1H6 cross-reacts with restrained thymidine-rich single stranded DNA.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 10, p. 5913, doi. 10.1093/nar/gkx245

By:

Kazemier, Hinke G.;
Paeschke, Katrin;
Lansdorp, Peter M.

Publication type:

Article

Corrigendum: Structural basis for the Smad5 MH1 domain to recognize different DNA sequences.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 10, p. 6255, doi. 10.1093/nar/gkx226

By:

Nan Chai;
Wan-Xin Li;
Jue Wang;
Zhi-Xin Wang;
Shi-Ming Yang;
Jia-Wei Wu

Publication type:

Article

Structure of acid deoxyribonuclease.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 10, p. 6217, doi. 10.1093/nar/gkx222

By:

Varela-Ramirez, Armando;
Abendroth, Jan;
Mejia, Adrian A.;
Phan, Isabelle Q.;
Lorimer, Donald D.;
Edwards, Thomas E.;
Aguilera, Renato J.

Publication type:

Article

The SWI/SNF ATP-dependent nucleosome remodeler promotes resection initiation at a DNA double-strand break in yeast.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 10, p. 5887, doi. 10.1093/nar/gkx221

By:

Wiest, Nathaniel E.;
Houghtaling, Scott;
Sanchez, Joseph C.;
Tomkinson, Alan E.;
Osley, Mary Ann

Publication type:

Article

A non-catalytic role of RecBCD in homology directed gap repair and translesion synthesis.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 10, p. 5877, doi. 10.1093/nar/gkx217

By:

Laureti, Luisa;
Lee, Lara;
Philippin, Gaëlle;
Pagès, Vincent

Publication type:

Article

The crystal structure of Trz1, the long form RNase Z from yeast.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 10, p. 6209, doi. 10.1093/nar/gkx216

By:

Miao Ma;
Li de la Sierra-Gallay, Ines;
Lazar, Noureddine;
Pellegrini, Olivier;
Durand, Dominique;
Marchfelder, Anita;
Condon, Ciarán;
van Tilbeurgh, Herman

Publication type:

Article

Uracil DNA glycosylase (UDG) activities in Bradyrhizobium diazoefficiens: characterization of a new class of UDG with broad substrate specificity.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 10, p. 5863, doi. 10.1093/nar/gkx209

By:

Chembazhi, Ullas Valiya;
Patil, Vinod Vikas;
Sah, Shivjee;
Reeve, Wayne;
Tiwari, Ravi P.;
Woo, Euijeon;
Varshney, Umesh

Publication type:

Article

Functional anatomy of the immunoglobulin heavy chain 3' super-enhancer needs not only core enhancer elements but also their unique DNA context.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 10, p. 5829, doi. 10.1093/nar/gkx203

By:

Le Noir, Sandrine;
Boyer, François;
Lecardeur, Sandrine;
Brousse, Mylène;
Oruc, Zeliha;
Cook-Moreau, Jeanne;
Denizot, Yves;
Cogné, Michel

Publication type:

Article

Yeast Sub1 and human PC4 are G-quadruplex binding proteins that suppress genome instability at co-transcriptionally formed G4 DNA.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 10, p. 5850, doi. 10.1093/nar/gkx201

By:

Lopez, Christopher R.;
Singh, Shivani;
Hambarde, Shashank;
Griffin, Wezley C.;
Jun Gao;
Chib, Shubeena;
Yang Yu;
Ira, Grzegorz;
Raney, Kevin D.;
Nayun Kim

Publication type:

Article

Genome urbanization: clusters of topologically co-regulated genes delineate functional compartments in the genome of Saccharomyces cerevisiae.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 10, p. 5818, doi. 10.1093/nar/gkx198

By:

Tsochatzidou, Maria;
Malliarou, Maria;
Papanikolaou, Nikolas;
Roca, Joaquim;
Nikolaou, Christoforos

Publication type:

Article

New inhibitor targeting human transcription factor HSF1: effects on the heat shock response and tumor cell survival.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 10, p. 5797, doi. 10.1093/nar/gkx194

By:

Vilaboa, Nuria;
Boré, Alba;
Martin-Saavedra, Francisco;
Bayford, Melanie;
Winfield, Natalie;
Firth-Clark, Stuart;
Kirton, Stewart B.;
Voellmy, Richard

Publication type:

Article

Telomere associated primase Tap repairs truncated telomeres of Streptomyces.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 10, p. 5838, doi. 10.1093/nar/gkx189

By:

Chien-Chin Yang;
Shu-Min Tseng;
Hung-Yin Pan;
Chih-Hung Huang;
Chen, Carton W.

Publication type:

Article

Dynamic changes in chromatin states during specification and differentiation of adult intestinal stem cells.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 10, p. 5770, doi. 10.1093/nar/gkx167

By:

Kazakevych, Juri;
Sayols, Sergi;
Messner, Berith;
Krienke, Christina;
Soshnikova, Natalia

Publication type:

Article

Genome-wide mapping of infection-induced SINE RNAs reveals a role in selective mRNA export.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 10, p. 6194, doi. 10.1093/nar/gkx180

By:

Karijolich, John;
Yang Zhao;
Alla, Ravi;
Glaunsinger, Britt

Publication type:

Article

TDP-43 suppresses tau expression via promoting its mRNA instability.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 10, p. 6177, doi. 10.1093/nar/gkx175

By:

Jianlan Gu;
Feng Wu;
Wen Xu;
Jianhua Shi;
Wen Hu;
Nana Jin;
Wei Qian;
Xinglong Wang;
Khalid Iqbal;
Cheng-Xin Gong;
Fei Liu

Publication type:

Article

A sensitivity analysis of RNA folding nearest neighbor parameters identifies a subset of free energy parameters with the greatest impact on RNA secondary structure prediction.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 10, p. 6168, doi. 10.1093/nar/gkx170

By:

Zuber, Jeffrey;
Sun, Hongying;
Zhang, Xiaoju;
McFadyen, Iain;
Mathews, David H.

Publication type:

Article

The primary transcriptome of Neisseria meningitidis and its interaction with the RNA chaperone Hfq.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 10, p. 6147, doi. 10.1093/nar/gkx168

By:

Heidrich, Nadja;
Bauriedl, Saskia;
Barquist, Lars;
Lei Li;
Schoen, Christoph;
Vogel, Jörg

Publication type:

Article

Trypanosoma brucei RAP1 maintains telomere and subtelomere integrity by suppressing TERRA and telomeric RNA:DNA hybrids.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 10, p. 5785, doi. 10.1093/nar/gkx184

By:

Nanavaty, Vishal;
Sandhu, Ranjodh;
Jehi, Sanaa E.;
Pandya, Unnati M.;
Li, Bibo

Publication type:

Article

ChIP-seq analysis of the LuxR-type regulator VjbR reveals novel insights into the Brucella virulence gene expression network.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 10, p. 5757, doi. 10.1093/nar/gkx165

By:

Kleinman, Claudia L.;
Sycz, Gabriela;
Bonomi, Hernán R.;
Rodríguez, Romina M.;
Zorreguieta, Angeles;
Sieira, Rodrigo

Publication type:

Article

FASTKD1 and FASTKD4 have opposite effects on expression of specific mitochondrial RNAs, depending upon their endonuclease-like RAP domain.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 10, p. 6135, doi. 10.1093/nar/gkx164

By:

Boehm, Erik;
Zaganelli, Sofia;
Maundrell, Kinsey;
Jourdain, Alexis A.;
Thore, Stéphane;
Martinou, Jean-Claude

Publication type:

Article

ICF-specific DNMT3B dysfunction interferes with intragenic regulation of mRNA transcription and alternative splicing.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 10, p. 5739, doi. 10.1093/nar/gkx163

By:

Gatto, Sole;
Gagliardi, Miriam;
Franzese, Monica;
Leppert, Sylwia;
Papa, Mariarosaria;
Cammisa, Marco;
Grillo, Giacomo;
Velasco, Guillame;
Francastel, Claire;
Toubiana, Shir;
D'Esposito, Maurizio;
Angelini, Claudia;
Matarazzo, Maria R.

Publication type:

Article

The pentatricopeptide repeat protein MTSF2 stabilizes a nad1 precursor transcript and defines the 3' end of its 5'-half intron.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 10, p. 6119, doi. 10.1093/nar/gkx162

By:

Chuande Wang;
Aubé, Fabien;
Planchard, Noelya;
Quadrado, Martine;
Dargel-Graffin, Céline;
Nogué, Fabien;
Mireau, Hakim

Publication type:

Article

Melting temperature highlights functionally important RNA structure and sequence elements in yeast mRNA coding regions.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 10, p. 6109, doi. 10.1093/nar/gkx161

By:

Fei Qi;
Frishman, Dmitrij

Publication type:

Article

Random pseuoduridylation in vivo reveals critical region of Escherichia coli 23S rRNA for ribosome assembly.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 10, p. 6098, doi. 10.1093/nar/gkx160

By:

Leppik, Margus;
Liiv, Aivar;
Remme, Jaanus

Publication type:

Article

A class of circadian long non-coding RNAs mark enhancers modulating long-range circadian gene regulation.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 10, p. 5720, doi. 10.1093/nar/gkx156

By:

Zenghua Fan;
Meng Zhao;
Joshi, Parth D.;
Ping Li;
Yan Zhang;
Weimin Guo;
Yichi Xu;
Haifang Wang;
Zhihu Zhao;
Jun Yan

Publication type:

Article

RNA-protein interactions govern antiviral specificity and encapsidation of broad spectrum anti-HIV reverse transcriptase aptamers.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 10, p. 6087, doi. 10.1093/nar/gkx155

By:

Lange, Margaret J.;
Nguyen, Phuong D. M.;
Callaway, Mackenzie K.;
Johnson, Marc C.;
Burke, Donald H.

Publication type:

Article

sCLIP--an integrated platform to study RNA-protein interactomes in biomedical research: identification of CSTF2tau in alternative processing of small nuclear RNAs.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 10, p. 6074, doi. 10.1093/nar/gkx152

By:

Kargapolova, Yulia;
Levin, Michal;
Lackner, Karl;
Danckwardt, Sven

Publication type:

Article

AUF1 facilitates microRNA-mediated gene silencing.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 10, p. 6064, doi. 10.1093/nar/gkx149

By:

Kyung-Won Min;
Myung Hyun Jo;
Soochul Shin;
Davila, Sylvia;
Zealy, Richard W.;
Soo Im Kang;
Lloyd, Lawson T.;
Sungchul Hohng;
Je-Hyun Yoon

Publication type:

Article

Structural and mechanistic insights into regulation of HBO1 histone acetyltransferase activity by BRPF2.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 10, p. 5707, doi. 10.1093/nar/gkx142

By:

Ye Tao;
Chen Zhong;
Junjun Zhu;
Shutong Xu;
Jianping Ding

Publication type:

Article

N<sup>6</sup>-methyladenosine alters RNA structure to regulate binding of a low-complexity protein.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 10, p. 6051, doi. 10.1093/nar/gkx141

By:

Nian Liu;
Zhou, Katherine I.;
Parisien, Marc;
Dai, Qing;
Diatchenko, Luda;
Tao Pan

Publication type:

Article

Comparative analyses of the thermodynamic RNA binding signatures of different types of RNA recognition motifs.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 10, p. 6037, doi. 10.1093/nar/gkx136

By:

Samatanga, Brighton;
Cléry, Antoine;
Barraud, Pierre;
Allain, Frédéric H.-T.;
Jelesarov, Ilian

Publication type:

Article

N1-methyl-pseudouridine in mRNA enhances translation through eIF2α-dependent and independent mechanisms by increasing ribosome density.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 10, p. 6023, doi. 10.1093/nar/gkx135

By:

Svitkin, Yuri V.;
Yi Min Cheng;
Chakraborty, Tirtha;
Presnyak, Vladimir;
John, Matthias;
Sonenberg, Nahum

Publication type:

Article

Coordination among tertiary base pairs results in an efficient frameshift-stimulating RNA pseudoknot.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 10, p. 6011, doi. 10.1093/nar/gkx134

By:

Yu-Ting Chen;
Kai-Chun Chang;
Hao-Teng Hu;
Yi-Lan Chen;
You-Hsin Lin;
Chiung-Fang Hsu;
Cheng-Fu Chang;
Kung-Yao Chang;
Jin-Der Wen

Publication type:

Article