Works matching IS 03051048 AND DT 2018 AND VI 46 AND IP D1

Results: 185

mirTrans: a resource of transcriptional regulation on microRNAs for human cell lines.

Published in:

Nucleic Acids Research, 2018, v. 46, n. D1, p. D168, doi. 10.1093/nar/gkx996

By:

Hua, Xu;
Tang, Rongjun;
Xu, Xiuxiu;
Wang, Zhi;
Xu, Qi;
Chen, Luxiao;
Wingender, Edgar;
Li, Jie;
Zhang, Chenyu;
Wang, Jin

Publication type:

Article

DGIdb 3.0: a redesign and expansion of the drug–gene interaction database.

Published in:

Nucleic Acids Research, 2018, v. 46, n. D1, p. D1068, doi. 10.1093/nar/gkx1143

By:

Cotto, Kelsy C;
Wagner, Alex H;
Feng, Yang-Yang;
Kiwala, Susanna;
Coffman, Adam C;
Spies, Gregory;
Wollam, Alex;
Spies, Nicholas C;
Griffith, Obi L;
Griffith, Malachi

Publication type:

Article

The 2018 Nucleic Acids Researchdatabase issue and the online molecular biology database collection.

Published in:

Nucleic Acids Research, 2018, v. 46, n. D1, p. D1, doi. 10.1093/nar/gkx1235

By:

Rigden, Daniel J;
Fernández, Xosé M

Publication type:

Article

The European Bioinformatics Institute in 2017: data coordination and integration.

Published in:

Nucleic Acids Research, 2018, v. 46, n. D1, p. D21, doi. 10.1093/nar/gkx1154

By:

Cook, Charles E;
Bergman, Mary T;
Cochrane, Guy;
Apweiler, Rolf;
Birney, Ewan

Publication type:

Article

Erratum.

Published in:

Nucleic Acids Research, 2018, v. 46, n. D1, p. D1284, doi. 10.1093/nar/gkx1188

By:

Khan, Aziz;
Fornes, Oriol;
Stigliani, Arnaud;
Gheorghe, Marius;
Castro-Mondragon, Jaime A;
van der Lee, Robin;
Bessy, Adrien;
Chèneby, Jeanne;
Kulkarni, Shubhada R;
Tan, Ge

Publication type:

Article

Corrigendum.

Published in:

Nucleic Acids Research, 2018, v. 46, n. D1, p. D1282, doi. 10.1093/nar/gkx1187

By:

Lewis, Tony E;
Sillitoe, Ian;
Dawson, Natalie;
Lam, Su Datt;
Clarke, Tristan;
Lee, David;
Orengo, Christine;
Lees, Jonathan

Publication type:

Article

Expression Atlas: gene and protein expression across multiple studies and organisms.

Published in:

Nucleic Acids Research, 2018, v. 46, n. D1, p. D246, doi. 10.1093/nar/gkx1158

By:

Papatheodorou, Irene;
Fonseca, Nuno A;
Keays, Maria;
Tang, Y Amy;
Barrera, Elisabet;
Bazant, Wojciech;
Burke, Melissa;
Füllgrabe, Anja;
Fuentes, Alfonso Muñoz-Pomer;
George, Nancy

Publication type:

Article

aBiofilm: a resource of anti-biofilm agents and their potential implications in targeting antibiotic drug resistance.

Published in:

Nucleic Acids Research, 2018, v. 46, n. D1, p. D894, doi. 10.1093/nar/gkx1157

By:

Rajput, Akanksha;
Thakur, Anamika;
Sharma, Shivangi;
Kumar, Manoj

Publication type:

Article

Corrigendum.

Published in:

Nucleic Acids Research, 2018, v. 46, n. D1, p. D1283, doi. 10.1093/nar/gkx1212

By:

Zhu, Chengsheng;
Mahlich, Yannick;
Miller, Maximilian;
Bromberg, Yana

Publication type:

Article

ClinVar: improving access to variant interpretations and supporting evidence.

Published in:

Nucleic Acids Research, 2018, v. 46, n. D1, p. D1062, doi. 10.1093/nar/gkx1153

By:

Landrum, Melissa J;
Lee, Jennifer M;
Benson, Mark;
Brown, Garth R;
Chao, Chen;
Chitipiralla, Shanmuga;
Gu, Baoshan;
Hart, Jennifer;
Hoffman, Douglas;
Jang, Wonhee

Publication type:

Article

The Planteome database: an integrated resource for reference ontologies, plant genomics and phenomics.

Published in:

Nucleic Acids Research, 2018, v. 46, n. D1, p. D1168, doi. 10.1093/nar/gkx1152

By:

Cooper, Laurel;
Meier, Austin;
Laporte, Marie-Angélique;
Elser, Justin L;
Mungall, Chris;
Sinn, Brandon T;
Cavaliere, Dario;
Carbon, Seth;
Dunn, Nathan A;
Smith, Barry

Publication type:

Article

mirDIP 4.1--integrative database of human microRNA target predictions.

Published in:

Nucleic Acids Research, 2018, v. 46, n. D1, p. D360, doi. 10.1093/nar/gkx1144

By:

Tokar, Tomas;
Pastrello, Chiara;
Rossos, Andrea E M;
Abovsky, Mark;
Hauschild, Anne-Christin;
Tsay, Mike;
Lu, Richard;
Jurisica, Igor

Publication type:

Article

DIANA-TarBase v8: a decade-long collection of experimentally supported miRNA--gene interactions.

Published in:

Nucleic Acids Research, 2018, v. 46, n. D1, p. D239, doi. 10.1093/nar/gkx1141

By:

Karagkouni, Dimitra;
Paraskevopoulou, Maria D;
Chatzopoulos, Serafeim;
Vlachos, Ioannis S;
Tastsoglou, Spyros;
Kanellos, Ilias;
Papadimitriou, Dimitris;
Kavakiotis, Ioannis;
Maniou, Sofia;
Skoufos, Giorgos

Publication type:

Article

MethBank 3.0: a database of DNA methylomes across a variety of species.

Published in:

Nucleic Acids Research, 2018, v. 46, n. D1, p. D288, doi. 10.1093/nar/gkx1139

By:

Li, Rujiao;
Liang, Fang;
Li, Mengwei;
Zou, Dong;
Sun, Shixiang;
Zhao, Yongbing;
Zhao, Wenming;
Bao, Yiming;
Xiao, Jingfa;
Zhang, Zhang

Publication type:

Article

FunCoup 4: new species, data, and visualization.

Published in:

Nucleic Acids Research, 2018, v. 46, n. D1, p. D601, doi. 10.1093/nar/gkx1138

By:

Ogris, Christoph;
Guala, Dimitri;
Kaduk, Mateusz;
Sonnhammer, Erik L L

Publication type:

Article

The MEROPSdatabase of proteolytic enzymes, their substrates and inhibitors in 2017 and a comparison with peptidases in the PANTHER database.

Published in:

Nucleic Acids Research, 2018, v. 46, n. D1, p. D624, doi. 10.1093/nar/gkx1134

By:

Rawlings, Neil D;
Barrett, Alan J;
Thomas, Paul D;
Huang, Xiaosong;
Bateman, Alex;
Finn, Robert D

Publication type:

Article

mSignatureDB: a database for deciphering mutational signatures in human cancers.

Published in:

Nucleic Acids Research, 2018, v. 46, n. D1, p. D964, doi. 10.1093/nar/gkx1133

By:

Huang, Po-Jung;
Chiu, Ling-Ya;
Lee, Chi-Ching;
Yeh, Yuan-Ming;
Huang, Kuo-Yang;
Chiu, Cheng-Hsun;
Tang, Petrus

Publication type:

Article

The Reactome Pathway Knowledgebase.

Published in:

Nucleic Acids Research, 2018, v. 46, n. D1, p. D649, doi. 10.1093/nar/gkx1132

By:

Fabregat, Antonio;
Jupe, Steven;
Matthews, Lisa;
Sidiropoulos, Konstantinos;
Gillespie, Marc;
Garapati, Phani;
Haw, Robin;
Jassal, Bijay;
Korninger, Florian;
May, Bruce

Publication type:

Article

An update on sORFs.org: a repository of small ORFs identified by ribosome profiling.

Published in:

Nucleic Acids Research, 2018, v. 46, n. D1, p. D497, doi. 10.1093/nar/gkx1130

By:

Olexiouk, Volodimir;
Van Criekinge, Wim;
Menschaert, Gerben

Publication type:

Article

JASPAR 2018: update of the open-access database of transcription factor binding profiles and its web framework.

Published in:

Nucleic Acids Research, 2018, v. 46, n. D1, p. D260, doi. 10.1093/nar/gkx1126

By:

Khan, Aziz;
Fornes, Oriol;
Stigliani, Arnaud;
Gheorghe, Marius;
Castro-Mondragon, Jaime A;
van der Lee, Robin;
Bessy, Adrien;
Chèneby, Jeanne;
Kulkarni, Shubhada R;
Tan, Ge

Publication type:

Article

The European Nucleotide Archive in 2017.

Published in:

Nucleic Acids Research, 2018, v. 46, n. D1, p. D36, doi. 10.1093/nar/gkx1125

By:

Silvester, Nicole;
Alako, Blaise;
Amid, Clara;
Cerdeño-Tarrága, Ana;
Clarke, Laura;
Cleland, Iain;
Harrison, Peter W;
Jayathilaka, Suran;
Kay, Simon;
Keane, Thomas

Publication type:

Article

MVP: a microbe--phage interaction database.

Published in:

Nucleic Acids Research, 2018, v. 46, n. D1, p. D700, doi. 10.1093/nar/gkx1124

By:

Gao, Na L;
Zhang, Chengwei;
Zhang, Zhanbing;
Hu, Songnian;
Lercher, Martin J;
Zhao, Xing-Ming;
Bork, Peer;
Liu, Zhi;
Chen, Wei-Hua

Publication type:

Article

The IUPHAR/BPS Guide to PHARMACOLOGY in 2018: updates and expansion to encompass the new guide to IMMUNOPHARMACOLOGY.

Published in:

Nucleic Acids Research, 2018, v. 46, n. D1, p. D1091, doi. 10.1093/nar/gkx1121

By:

Harding, Simon D;
Sharman, Joanna L;
Faccenda, Elena;
Southan, Chris;
Pawson, Adam J;
Ireland, Sam;
Gray, Alasdair J G;
Bruce, Liam;
Alexander, Stephen P H;
Anderton, Stephen

Publication type:

Article

PRGdb 3.0: a comprehensive platform for prediction and analysis of plant disease resistance genes.

Published in:

Nucleic Acids Research, 2018, v. 46, n. D1, p. D1197, doi. 10.1093/nar/gkx1119

By:

Osuna-Cruz, Cristina M;
Paytuvi-Gallart, Andreu;
Di Donato, Antimo;
Sundesha, Vicky;
Andolfo, Giuseppe;
Aiese Cigliano, Riccardo;
Sanseverino, Walter;
Ercolano, Maria R

Publication type:

Article

Molecular Interaction Search Tool (MIST): an integrated resource for mining gene and protein interaction data.

Published in:

Nucleic Acids Research, 2018, v. 46, n. D1, p. D567, doi. 10.1093/nar/gkx1116

By:

Hu, Yanhui;
Vinayagam, Arunachalam;
Nand, Ankita;
Comjean, Aram;
Chung, Verena;
Hao, Tong;
Mohr, Stephanie E;
Perrimon, Norbert

Publication type:

Article

HOCOMOCO: towards a complete collection of transcription factor binding models for human and mouse via large-scale ChIP-Seq analysis.

Published in:

Nucleic Acids Research, 2018, v. 46, n. D1, p. D252, doi. 10.1093/nar/gkx1106

By:

Kulakovskiy, Ivan V;
Vorontsov, Ilya E;
Yevshin, Ivan S;
Sharipov, Ruslan N;
Fedorova, Alla D;
Rumynskiy, Eugene I;
Medvedeva, Yulia A;
Magana-Mora, Arturo;
Bajic, Vladimir B;
Papatsenko, Dmitry A

Publication type:

Article

Gramene 2018: unifying comparative genomics and pathway resources for plant research.

Published in:

Nucleic Acids Research, 2018, v. 46, n. D1, p. D1181, doi. 10.1093/nar/gkx1111

By:

Tello-Ruiz, Marcela K;
Naithani, Sushma;
Stein, Joshua C;
Gupta, Parul;
Campbell, Michael;
Olson, Andrew;
Wei, Sharon;
Preece, Justin;
Geniza, Matthew J;
Jiao, Yinping

Publication type:

Article

GPCRdb in 2018: adding GPCR structure models and ligands.

Published in:

Nucleic Acids Research, 2018, v. 46, n. D1, p. D440, doi. 10.1093/nar/gkx1109

By:

Pándy-Szekeres, Gáspár;
Munk, Christian;
Tsonkov, Tsonko M;
Mordalski, Stefan;
Harpsøe, Kasper;
Hauser, Alexander S;
Bojarski, Andrzej J;
Gloriam, David E

Publication type:

Article

ANISEED 2017: extending the integrated ascidian database to the exploration and evolutionary comparison of genome-scale datasets.

Published in:

Nucleic Acids Research, 2018, v. 46, n. D1, p. D718, doi. 10.1093/nar/gkx1108

By:

Brozovic, Matija;
Dantec, Christelle;
Dardaillon, Justine;
Dauga, Delphine;
Faure, Emmanuel;
Gineste, Mathieu;
Louis, Alexandra;
Naville, Magali;
Nitta, Kazuhiro R;
Piette, Jacques

Publication type:

Article

NONCODEV5: a comprehensive annotation database for long non-coding RNAs.

Published in:

Nucleic Acids Research, 2018, v. 46, n. D1, p. D308, doi. 10.1093/nar/gkx1107

By:

Fang, ShuangSang;
Zhang, LiLi;
Guo, JinCheng;
Niu, YiWei;
Wu, Yang;
Li, Hui;
Zhao, LianHe;
Li, XiYuan;
Teng, XueYi;
Sun, XianHui

Publication type:

Article

Saccharomycesgenome database informs human biology.

Published in:

Nucleic Acids Research, 2018, v. 46, n. D1, p. D736, doi. 10.1093/nar/gkx1112

By:

Skrzypek, Marek S;
Nash, Robert S;
Wong, Edith D;
MacPherson, Kevin A;
Hellerstedt, Sage T;
Engel, Stacia R;
Karra, Kalpana;
Weng, Shuai;
Sheppard, Travis K;
Binkley, Gail

Publication type:

Article

iPTMnet: an integrated resource for protein post-translational modification network discovery.

Published in:

Nucleic Acids Research, 2018, v. 46, n. D1, p. D542, doi. 10.1093/nar/gkx1104

By:

Huang, Hongzhan;
Arighi, Cecilia N;
Ross, Karen E;
Ren, Jia;
Li, Gang;
Chen, Sheng-Chih;
Wang, Qinghua;
Cowart, Julie;
Vijay-Shanker, K;
Wu, Cathy H

Publication type:

Article

rSNPBase 3.0: an updated database of SNP-related regulatory elements, element-gene pairs and SNP-based gene regulatory networks.

Published in:

Nucleic Acids Research, 2018, v. 46, n. D1, p. D1111, doi. 10.1093/nar/gkx1101

By:

Guo, Liyuan;
Wang, Jing

Publication type:

Article

Ensembl 2018.

Published in:

Nucleic Acids Research, 2018, v. 46, n. D1, p. D754, doi. 10.1093/nar/gkx1098

By:

Zerbino, Daniel R;
Achuthan, Premanand;
Akanni, Wasiu;
Amode, M Ridwan;
Barrell, Daniel;
Bhai, Jyothish;
Billis, Konstantinos;
Cummins, Carla;
Gall, Astrid;
Girón, Carlos García

Publication type:

Article

The international nucleotide sequence database collaboration.

Published in:

Nucleic Acids Research, 2018, v. 46, n. D1, p. D48, doi. 10.1093/nar/gkx1097

By:

Karsch-Mizrachi, Ilene;
Takagi, Toshihisa;
Cochrane, Guy;
Collaboration, on behalf of the International Nucleotide Sequence Database

Publication type:

Article

MeDReaders: a database for transcription factors that bind to methylated DNA.

Published in:

Nucleic Acids Research, 2018, v. 46, n. D1, p. D146, doi. 10.1093/nar/gkx1096

By:

Wang, Guohua;
Luo, Ximei;
Wang, Jianan;
Wan, Jun;
Xia, Shuli;
Zhu, Heng;
Qian, Jiang;
Wang, Yadong

Publication type:

Article

Database resources of the National Center for Biotechnology Information.

Published in:

Nucleic Acids Research, 2018, v. 46, n. D1, p. D8, doi. 10.1093/nar/gkx1095

By:

Coordinators, NCBI Resource

Publication type:

Article

GenBank.

Published in:

Nucleic Acids Research, 2018, v. 46, n. D1, p. D741, doi. 10.1093/nar/gkx1094

By:

Benson, Dennis A;
Cavanaugh, Mark;
Clark, Karen;
Karsch-Mizrachi, Ilene;
Ostell, James;
Pruitt, Kim D;
Sayers, Eric W

Publication type:

Article

AutDB: a platform to decode the genetic architecture of autism.

Published in:

Nucleic Acids Research, 2018, v. 46, n. D1, p. D1049, doi. 10.1093/nar/gkx1093

By:

Pereanu, Wayne;
Larsen, Eric C;
Das, Ishita;
Estévez, Marcel A;
Sarkar, Anjali A;
Spring-Pearson, Senanu;
Kollu, Ravi;
Basu, Saumyendra N;
Banerjee-Basu, Sharmila

Publication type:

Article

ReMap 2018: an updated atlas of regulatory regions from an integrative analysis of DNA-binding ChIP-seq experiments.

Published in:

Nucleic Acids Research, 2018, v. 46, n. D1, p. D267, doi. 10.1093/nar/gkx1092

By:

Chèneby, Jeanne;
Gheorghe, Marius;
Artufel, Marie;
Mathelier, Anthony;
Ballester, Benoit

Publication type:

Article

PRODORIC2: the bacterial gene regulation database in 2018.

Published in:

Nucleic Acids Research, 2018, v. 46, n. D1, p. D320, doi. 10.1093/nar/gkx1091

By:

Eckweiler, Denitsa;
Dudek, Christian-Alexander;
Hartlich, Juliane;
Brötje, David;
Jahn, Dieter

Publication type:

Article

LinkedOmics: analyzing multi-omics data within and across 32 cancer types.

Published in:

Nucleic Acids Research, 2018, v. 46, n. D1, p. D956, doi. 10.1093/nar/gkx1090

By:

Vasaikar, Suhas V;
Straub, Peter;
Wang, Jing;
Zhang, Bing

Publication type:

Article

HMDB 4.0: the human metabolome database for 2018.

Published in:

Nucleic Acids Research, 2018, v. 46, n. D1, p. D608, doi. 10.1093/nar/gkx1089

By:

Wishart, David S;
Feunang, Yannick Djoumbou;
Marcu, Ana;
Guo, An Chi;
Liang, Kevin;
Vázquez-Fresno, Rosa;
Sajed, Tanvir;
Johnson, Daniel;
Li, Carin;
Karu, Naama

Publication type:

Article

SuperDRUG2: a one stop resource for approved/marketed drugs.

Published in:

Nucleic Acids Research, 2018, v. 46, n. D1, p. D1137, doi. 10.1093/nar/gkx1088

By:

Siramshetty, Vishal B;
Eckert, Oliver Andreas;
Gohlke, Björn-Oliver;
Goede, Andrean;
Chen, Qiaofeng;
Devarakonda, Prashanth;
Preissner, Saskia;
Preissner, Robert

Publication type:

Article

Minimotif Miner 4: a million peptide minimotifs and counting.

Published in:

Nucleic Acids Research, 2018, v. 46, n. D1, p. D465, doi. 10.1093/nar/gkx1085

By:

Lyon, Kenneth F;
Cai, Xingyu;
Young, Richard J;
Mamun, Abdullah-Al;
Rajasekaran, Sanguthevar;
Schiller, Martin R

Publication type:

Article

KNOTTIN: the database of inhibitor cystine knot scaffold after 10 years, toward a systematic structure modeling.

Published in:

Nucleic Acids Research, 2018, v. 46, n. D1, p. D454, doi. 10.1093/nar/gkx1084

By:

Postic, Guillaume;
Gracy, Jérôme;
Périn, Charlotte;
Chiche, Laurent;
Gelly, Jean-Christophe

Publication type:

Article

miRTarBase update 2018: a resource for experimentally validated microRNA-target interactions.

Published in:

Nucleic Acids Research, 2018, v. 46, n. D1, p. D296, doi. 10.1093/nar/gkx1067

By:

Chou, Chih-Hung;
Shrestha, Sirjana;
Yang, Chi-Dung;
Chang, Nai-Wen;
Lin, Yu-Ling;
Liao, Kuang-Wen;
Huang, Wei-Chi;
Sun, Ting-Hsuan;
Tu, Siang-Jyun;
Lee, Wei-Hsiang

Publication type:

Article

The Encyclopedia of DNA elements (ENCODE): data portal update.

Published in:

Nucleic Acids Research, 2018, v. 46, n. D1, p. D794, doi. 10.1093/nar/gkx1081

By:

Davis, Carrie A;
Hitz, Benjamin C;
Sloan, Cricket A;
Chan, Esther T;
Davidson, Jean M;
Gabdank, Idan;
Hilton, Jason A;
Jain, Kriti;
Baymuradov, Ulugbek K;
Narayanan, Aditi K

Publication type:

Article

MeT-DB V2.0: elucidating context-specific functions of N<sup>6</sup>-methyl-adenosine methyltranscriptome.

Published in:

Nucleic Acids Research, 2018, v. 46, n. D1, p. D281, doi. 10.1093/nar/gkx1080

By:

Liu, Hui;
Wang, Huaizhi;
Wei, Zhen;
Zhang, Songyao;
Hua, Gang;
Zhang, Shao-Wu;
Zhang, Lin;
Gao, Shou-Jiang;
Meng, Jia;
Chen, Xing

Publication type:

Article

PDBe: towards reusable data delivery infrastructure at protein data bank in Europe.

Published in:

Nucleic Acids Research, 2018, v. 46, n. D1, p. D486, doi. 10.1093/nar/gkx1070

By:

Mir, Saqib;
Alhroub, Younes;
Anyango, Stephen;
Armstrong, David R;
Berrisford, John M;
Clark, Alice R;
Conroy, Matthew J;
Dana, Jose M;
Deshpande, Mandar;
Gupta, Deepti

Publication type:

Article