Works matching IS 03051048 AND DT 2017 AND VI 45 AND IP 9

Results: 61

Human BCDIN3D monomethylates cytoplasmic histidine transfer RNA.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 9, p. 5423, doi. 10.1093/nar/gkx051

By:

Martinez, Anna;
Seisuke Yamashita;
Takashi Nagaike;
Yuriko Sakaguchi;
Tsutomu Suzuki;
Kozo Tomita

Publication type:

Article

Using sequence signatures and kink-turn motifs in knowledge-based statistical potentials for RNA structure prediction.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 9, p. 5414, doi. 10.1093/nar/gkx045

By:

Bayrak, Cigdem Sevim;
Kim, Namhee;
Schlick, Tamar

Publication type:

Article

SECIS-binding protein 2 interacts with the SMN complex and the methylosome for selenoprotein mRNP assembly and translation.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 9, p. 5399, doi. 10.1093/nar/gkx031

By:

Gribling-Burrer, Anne-Sophie;
Leichter, Michael;
Wurth, Laurence;
Huttin, Alexandra;
Schlotter, Florence;
Troffer-Charlier, Nathalie;
Cura, Vincent;
Barkats, Martine;
Cavarelli, Jean;
Massenet, Séverine;
Allmang, Christine

Publication type:

Article

Natural antisense transcripts are significantly involved in regulation of drought stress in maize.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 9, p. 5126, doi. 10.1093/nar/gkx085

By:

Jie Xu;
Qi Wang;
Freeling, Micheal;
Xuecai Zhang;
Yunbi Xu;
Yan Mao;
Xin Tang;
Fengkai Wu;
Hai Lan;
Moju Cao;
Tingzhao Rong;
Lisch, Damon;
Yanli Lu

Publication type:

Article

Roles of MIWI, MILI and PLD6 in small RNA regulation in mouse growing oocytes.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 9, p. 5387, doi. 10.1093/nar/gkx027

By:

Yuka Kabayama;
Hidehiro Toh;
Katanaya, Ami;
Takayuki Sakurai;
Shinichiro Chuma;
Satomi Kuramochi-Miyagawa;
Yumiko Saga;
Toru Nakano;
Hiroyuki Sasaki

Publication type:

Article

Corrigendum: The 24th annual Nucleic Acids Research database issue: a look back and upcoming changes.

Published in:: Nucleic Acids Research, 2017, v. 45, n. 9, p. 5627, doi. 10.1093/nar/gkx021
Publication type:: Article

Homo-trimerization is essential for the transcription factor function of Myrf for oligodendrocyte differentiation.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 9, p. 5112, doi. 10.1093/nar/gkx080

By:

Dongkyeong Kim;
Jin-ok Choi;
Chuandong Fan;
Shearer, Randall S.;
Sharif, Mohamed;
Busch, Patrick;
Yungki Park

Publication type:

Article

Robust and rapid algorithms facilitate large-scale whole genome sequencing downstream analysis in an integrative framework.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 9, p. 1, doi. 10.1093/nar/gkx019

By:

Miaoxin Li;
Jiang Li;
Mulin Jun Li;
Zhicheng Pan;
Hsu, Jacob Shujui;
Liu, Dajiang J.;
Xiaowei Zhan;
Junwen Wang;
Youqiang Song;
Pak Chung Sham

Publication type:

Article

Modeling complex patterns of differential DNA methylation that associate with gene expression changes.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 9, p. 5100, doi. 10.1093/nar/gkx078

By:

Schlosberg, Christopher E.;
VanderKraats, Nathan D.;
Edwards, John R.

Publication type:

Article

The lncRNA VELUCT strongly regulates viability of lung cancer cells despite its extremely low abundance.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 9, p. 5458, doi. 10.1093/nar/gkx076

By:

Seiler, Jana;
Breinig, Marco;
Caudron-Herger, Maïwen;
Polycarpou-Schwarz, Maria;
Boutros, Michael;
Diederichs, Sven

Publication type:

Article

The CCTL (Cpf1-assisted Cutting and Taq DNA ligase-assisted Ligation) method for efficient editing of large DNA constructs in vitro.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 9, p. 1, doi. 10.1093/nar/gkx018

By:

Chao Lei;
Shi-Yuan Li;
Jia-Kun Liu;
Xuan Zheng;
Guo-Ping Zhao;
Jin Wang

Publication type:

Article

A high quality Arabidopsis transcriptome for accurate transcript-level analysis of alternative splicing.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 9, p. 5061, doi. 10.1093/nar/gkx267

By:

Runxuan Zhang;
Calixto, Cristiane P. G.;
Marquez, Yamile;
Venhuizen, Peter;
Tzioutziou, Nikoleta A.;
Wenbin Guo;
Spensley, Mark;
Carlos Entizne, Juan;
Lewandowska, Dominika;
Have, Sara ten;
dit Frey, Nicolas Frei;
Hirt, Heribert;
James, Allan B.;
Nimmo, Hugh G.;
Barta, Andrea;
Kalyna, Maria;
Brown, John W. S.

Publication type:

Article

High-throughput single-molecule mapping links subtelomeric variants and long-range haplotypes with specific telomeres.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 9, p. 1, doi. 10.1093/nar/gkx017

By:

Young, Eleanor;
Pastor, Steven;
Rajagopalan, Ramakrishnan;
McCaffrey, Jennifer;
Sibert, Justin;
Mak, Angel C. Y.;
Kwok, Pui-Yan;
Riethman, Harold;
Ming Xiao

Publication type:

Article

p27<sup>Kip1</sup>, PCAF and PAX5 cooperate in the transcriptional regulation of specific target genes.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 9, p. 5086, doi. 10.1093/nar/gkx075

By:

Perearnau, Anna;
Orlando, Serena;
Islam, Abul B. M. M. K.;
Gallastegui, Edurne;
Martínez, Jonatan;
Jordan, Albert;
Bigas, Anna;
Aligué, Rosa;
Jesús Pujol, Maria;
Bachs, Oriol

Publication type:

Article

Pseudorotaxane formation via the slippage process with chemically cyclized oligonucleotides.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 9, p. 5036, doi. 10.1093/nar/gkx265

By:

Kazumitsu Onizuka;
Tomoko Chikuni;
Takuya Amemiya;
Takuya Miyashita;
Kyoko Onizuka;
Hiroshi Abe;
Fumi Nagatsugi

Publication type:

Article

Ligand binding to 2΄-deoxyguanosine sensing riboswitch in metabolic context.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 9, p. 5375, doi. 10.1093/nar/gkx016

By:

Yong-Boum Kim;
Wacker, Anna;
von Laer, Karl;
Rogov, Vladimir V.;
Suess, Beatrix;
Schwalbe, Harald

Publication type:

Article

Efficient chromosomal-scale DNA looping in Escherichia coli using multiple DNA-looping elements.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 9, p. 5074, doi. 10.1093/nar/gkx069

By:

Nan Hao;
Kim Sneppen;
Shearwin, Keith E.;
Dodd, Ian B.

Publication type:

Article

Deacetylation of topoisomerase I is an important physiological function of E. coli CobB.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 9, p. 5349, doi. 10.1093/nar/gkx250

By:

Qingxuan Zhou;
Yan Ning Zhou;
Ding Jun Jin;
Yuk-Ching Tse-Dinh

Publication type:

Article

The G-patch protein NF-κB-repressing factor mediates the recruitment of the exonuclease XRN2 and activation of the RNA helicase DHX15 in human ribosome biogenesis.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 9, p. 5359, doi. 10.1093/nar/gkx013

By:

Memet, Indira;
Doebele, Carmen;
Sloan, Katherine E.;
Bohnsack, Markus T.

Publication type:

Article

Self-assembly of multi-stranded RNA motifs into lattices and tubular structures.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 9, p. 5449, doi. 10.1093/nar/gkx063

By:

Stewart, Jaimie Marie;
Subramanian, Hari K. K.;
Franco, Elisa

Publication type:

Article

Precise quantification of translation inhibition by mRNA structures that overlap with the ribosomal footprint in N-terminal coding sequences.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 9, p. 5437, doi. 10.1093/nar/gkx061

By:

Borujeni, Amin Espah;
Cetnar, Daniel;
Farasat, Iman;
Smith, Ashlee;
Lundgren, Natasha;
Salis, Howard M.

Publication type:

Article

Chiral metallohelices enantioselectively target hybrid human telomeric G-quadruplex DNA.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 9, p. 5026, doi. 10.1093/nar/gkx244

By:

Andong Zhao;
Howson, Suzanne E.;
Chuanqi Zhao;
Jinsong Ren;
Scott, Peter;
Chunyu Wang;
Xiaogang Qu

Publication type:

Article

digit––a tool for detection and identification of genomic interchromosomal translocations.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 9, p. 1, doi. 10.1093/nar/gkx010

By:

Meier, Richard;
Graw, Stefan;
Beyerlein, Peter;
Koestler, Devin;
Molina, Julian R.;
Chien, Jeremy

Publication type:

Article

Yeast Hrq1 shares structural and functional homology with the disease-linked human RecQ4 helicase.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 9, p. 5217, doi. 10.1093/nar/gkx151

By:

Rogers, Cody M.;
Che-Yen Wang, Joseph;
Hiroki Noguchi;
Tsuyoshi Imasaki;
Yuichiro Takagi;
Bochman, Matthew L.

Publication type:

Article

Intra-endosomal trafficking mediated by lysobisphosphatidic acid contributes to intracellular release of phosphorothioate-modified antisense oligonucleotides.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 9, p. 5309, doi. 10.1093/nar/gkx231

By:

Shiyu Wang;
Hong Sun;
Michael Tanowitz;
Xue-hai Liang;
Crooke, Stanley T.

Publication type:

Article

High tolerance to self-targeting of the genome by the endogenous CRISPR-Cas system in an archaeon.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 9, p. 5208, doi. 10.1093/nar/gkx150

By:

Stachler, Aris-Edda;
Turgeman-Grott, Israela;
Shtifman-Segal, Ella;
Allers, Thorsten;
Marchfelder, Anita;
Gophna, Uri

Publication type:

Article

From benchmarking HITS-CLIP peak detection programs to a new method for identification of miRNA-binding sites from Ago2-CLIP data.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 9, p. 1, doi. 10.1093/nar/gkx007

By:

Bottini, Silvia;
Hamouda-Tekaya, Nedra;
Tanasa, Bogdan;
Zaragosi, Laure-Emmanuelle;
Grandjean, Valerie;
Repetto, Emanuela;
Trabucchi, Michele

Publication type:

Article

Structural characterization of interactions between transactivation domain 1 of the p65 subunit of NF-κB and transcription regulatory factors.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 9, p. 5564, doi. 10.1093/nar/gkx146

By:

Lecoq, Lauriane;
Raiola, Luca;
Chabot, Philippe R.;
Cyr, Normand;
Arseneault, Geneviève;
Legault, Pascale;
Omichinski, James G.

Publication type:

Article

The CDI toxin of Yersinia kristensenii is a novel bacterial member of the RNase A superfamily.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 9, p. 5013, doi. 10.1093/nar/gkx230

By:

Batot, Gaëlle;
Michalska, Karolina;
Ekberg, Greg;
Irimpan, Ervin M.;
Joachimiak, Grazyna;
Jedrzejczak, Robert;
Babnigg, Gyorgy;
Hayes, Christopher S.;
Joachimiak, Andrzej;
Goulding, Celia W.

Publication type:

Article

Crystal structure of the N-terminal domain of human Timeless and its interaction with Tipin.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 9, p. 5555, doi. 10.1093/nar/gkx139

By:

Holzer, Sandro;
Degliesposti, Gianluca;
Kilkenny, Mairi L.;
Maslen, Sarah L.;
Matak-Vinkovíc, Dijana;
Skehel, Mark;
Pellegrini, Luca

Publication type:

Article

Genomic and transcriptomic landscape of Escherichia coli BL21(DE3).

Published in:

Nucleic Acids Research, 2017, v. 45, n. 9, p. 5285, doi. 10.1093/nar/gkx228

By:

Sinyeon Kim;
Haeyoung Jeong;
Eun-Youn Kim;
Kim, Jihyun F.;
Sang Yup Lee;
Sung Ho Yoon

Publication type:

Article

Corrigendum: Self-assembly of multi-stranded RNA motifs into lattices and tubular structures.

Published in:: Nucleic Acids Research, 2017, v. 45, n. 9, p. 5628, doi. 10.1093/nar/gkx227
Publication type:: Article

Achieving large dynamic range control of gene expression with a compact RNA transcription–translation regulator.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 9, p. 5614, doi. 10.1093/nar/gkx215

By:

Westbrook, Alexandra M.;
Lucks, Julius B.

Publication type:

Article

Highly efficient biallelic genome editing of human ES/iPS cells using a CRISPR/Cas9 or TALEN system.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 9, p. 5198, doi. 10.1093/nar/gkx130

By:

Kazuo Takayama;
Keisuke Igai;
Yasuko Hagihara;
Rina Hashimoto;
Morifumi Hanawa;
Tetsushi Sakuma;
Masashi Tachibana;
Fuminori Sakurai;
Takashi Yamamoto;
Hiroyuki Mizuguchi

Publication type:

Article

Substrate preference of Gen endonucleases highlights the importance of branched structures as DNA damage repair intermediates.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 9, p. 5333, doi. 10.1093/nar/gkx214

By:

Bellendir, Stephanie P.;
Rognstad, Danielle J.;
Morris, Lydia P.;
Zapotoczny, Grzegorz;
Walton, William G.;
Redinbo, Matthew R.;
Ramsden, Dale A.;
Sekelsky, Jeff;
Erie, Dorothy A.

Publication type:

Article

Truncated ORF1 proteins can suppress LINE-1 retrotransposition in trans.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 9, p. 5294, doi. 10.1093/nar/gkx211

By:

Sokolowski, Mark;
Chynces, May;
deHaro, Dawn;
Christian, Claiborne M.;
Belancio, Victoria P.

Publication type:

Article

Gcn5-mediated Rph1 acetylation regulates its autophagic degradation under DNA damage stress.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 9, p. 5183, doi. 10.1093/nar/gkx129

By:

Feng Li;
Liang-De Zheng;
Xin Chen;
Xiaolu Zhao;
Briggs, Scott D.;
Hai-Ning Du

Publication type:

Article

YAMAT-seq: an efficient method for high-throughput sequencing of mature transfer RNAs.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 9, p. 1, doi. 10.1093/nar/gkx005

By:

Megumi Shigematsu;
Shozo Honda;
Phillipe Loher;
Telonis, Aristeidis G.;
Rigoutsos, Isidore;
Yohei Kirino

Publication type:

Article

Enhancing identification of cancer types via lowly-expressed microRNAs.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 9, p. 5048, doi. 10.1093/nar/gkx210

By:

Rasnic, Roni;
Linial, Nathan;
Linial, Michal

Publication type:

Article

Computational approach for deriving cancer progression roadmaps from static sample data.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 9, p. 1, doi. 10.1093/nar/gkx003

By:

Yijun Sun;
Jin Yao;
Le Yang;
Runpu Chen;
Nowak, Norma J.;
Goodison, Steve

Publication type:

Article

A single miR390 targeting event is sufficient for triggering TAS3-tasiRNA biogenesis in Arabidopsis.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 9, p. 5539, doi. 10.1093/nar/gkx119

By:

Fenselau de Felippes, Felipe;
Marchais, Antonin;
Sarazin, Alexis;
Oberlin, Stefan;
Voinnet, Olivier

Publication type:

Article

NMR-based method of small changes reveals how DNA mutator APOBEC3A interacts with its single-stranded DNA substrate.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 9, p. 5602, doi. 10.1093/nar/gkx196

By:

Harjes, Stefan;
Jameson, Geoffrey B.;
Filichev, Vyacheslav V.;
Edwards, Patrick J. B.;
Harjes, Elena

Publication type:

Article

High pressure activation of the Mrr restriction endonuclease in Escherichia coli involves tetramer dissociation.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 9, p. 5323, doi. 10.1093/nar/gkx192

By:

Bourges, Anaïs C.;
Montaguth, Oscar E. Torres;
Ghosh, Anirban;
Tadesse, Wubishet M.;
Declerck, Nathalie;
Aertsen, Abram;
Royer, Catherine A.

Publication type:

Article

TIEG1 modulates β-catenin sub-cellular localization and enhances Wnt signaling in bone.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 9, p. 5170, doi. 10.1093/nar/gkx118

By:

Subramaniam, Malayannan;
Cicek, Muzaffer;
Pitel, Kevin S.;
Bruinsma, Elizabeth S.;
Holte, Molly H. Nelson;
Withers, Sarah G.;
Rajamannan, Nalini M.;
Secreto, Frank J.;
Venuprasad, K.;
Hawse, John R.

Publication type:

Article

Insights into Watson–Crick/Hoogsteen breathing dynamics and damage repair from the solution structure and dynamic ensemble of DNA duplexes containing m<sup>1</sup>A.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 9, p. 5586, doi. 10.1093/nar/gkx186

By:

Sathyamoorthy, Bharathwaj;
Honglue Shi;
Huiqing Zhou;
Yi Xue;
Rangadurai, Atul;
Merriman, Dawn K.;
Al-Hashimi, Hashim M.

Publication type:

Article

Amplification of unscheduled DNA synthesis signal enables fluorescence-based single cell quantification of transcription-coupled nucleotide excision repair.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 9, p. 1, doi. 10.1093/nar/gkw1360

By:

Wienholz, Franziska;
Vermeulen, Wim;
Marteijn, Jurgen A.

Publication type:

Article

Rgf1p (Rho1p GEF) is required for double-strand break repair in fission yeast.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 9, p. 5269, doi. 10.1093/nar/gkx176

By:

Manjón, Elvira;
Edreira, Tomás;
Muñoz, Sofía;
Sánchez, Yolanda

Publication type:

Article

Optimization of a novel biophysical model using large scale in vivo antisense hybridization data displays improved prediction capabilities of structurally accessible RNA regions.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 9, p. 5523, doi. 10.1093/nar/gkx115

By:

Vazquez-Anderson, Jorge;
Mihailovic, Mia K.;
Baldridge, Kevin C.;
Reyes, Kristofer G.;
Haning, Katie;
Seung Hee Cho;
Amador, Paul;
Powell, Warren B.;
Contreras, Lydia M.

Publication type:

Article

Rad50 ATPase activity is regulated by DNA ends and requires coordination of both active sites.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 9, p. 5255, doi. 10.1093/nar/gkx173

By:

Deshpande, Rajashree A.;
Ji-Hoon Lee;
Paull, Tanya T.

Publication type:

Article

Avoidance of APOBEC3B-induced mutation by error-free lesion bypass.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 9, p. 5243, doi. 10.1093/nar/gkx169

By:

Hoopes, James I.;
Hughes, Amber L.;
Hobson, Lauren A.;
Cortez, Luis M.;
Brown, Alexander J.;
Roberts, Steven A.

Publication type:

Article