Works matching IS 03051048 AND DT 2017 AND VI 45 AND IP 5

Results: 64

Chromatin binding of Gcn5 in Drosophila is largely mediated by CP190.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 5, p. 2384, doi. 10.1093/nar/gkw1178

By:

Ali, Tamer;
Krüger, Marcus;
Bhuju, Sabin;
Jarek, Michael;
Bartkuhn, Marek;
Renkawitz, Rainer

Publication type:

Article

Revealing the role of the product metal in DNA polymerase β catalysis.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 5, p. 2736, doi. 10.1093/nar/gkw1363

By:

Perera, Lalith;
Freudenthal, Bret D.;
Beard, William A.;
Pedersen, Lee G.;
Wilson, Samuel H.

Publication type:

Article

Corrigendum.

Published in:: Nucleic Acids Research, 2017, v. 45, n. 5, p. 2936, doi. 10.1093/nar/gkw1218
Publication type:: Article

Corrigendum.

Published in:: Nucleic Acids Research, 2017, v. 45, n. 5, p. 2935, doi. 10.1093/nar/gkw1217
Publication type:: Article

Nucleoid and cytoplasmic localization of small RNAs in Escherichia coli.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 5, p. 2919, doi. 10.1093/nar/gkx023

By:

Huanjie Sheng;
Stauffer, Weston T.;
Hussein, Razika;
Lin, Chris;
Lim, Han N.

Publication type:

Article

Flexibility and stabilization of HgII-mediated C:T and T:T base pairs in DNA duplex.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 5, p. 2910, doi. 10.1093/nar/gkw1296

By:

Hehua Liu;
Chen Cai;
Phensinee Haruehanroengra;
Qingqing Yao;
Yiqing Chen;
Chun Yang;
Qiang Luo;
Baixing Wu;
Jixi Li;
Jinbiao Ma;
Jia Sheng;
Jianhua Gan

Publication type:

Article

Destabilization of the PCNA trimer mediated by its interaction with the NEIL1 DNA glycosylase.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 5, p. 2897, doi. 10.1093/nar/gkw1282

By:

Prakash, Aishwarya;
Moharana, Kedar;
Wallace, Susan S.;
Doublié, Sylvie

Publication type:

Article

Cryo-EM structure of the spinach chloroplast ribosome reveals the location of plastid-specific ribosomal proteins and extensions.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 5, p. 2887, doi. 10.1093/nar/gkw1272

By:

Graf, Michael;
Arenz, Stefan;
Huter, Paul;
Dönhöfer, Alexandra;
Nováček, Jiří;
Wilson, Daniel N.

Publication type:

Article

Toxin inhibition in C. crescentus VapBC1 is mediated by a flexible pseudo-palindromic protein motif and modulated by DNA binding.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 5, p. 2875, doi. 10.1093/nar/gkw1266

By:

Bendtsen, Kirstine L.;
Kehan Xu;
Luckmann, Majbritt;
Winther, Kristoffer S.;
Shah, Shiraz A.;
Pedersen, Christian N. S.;
Brodersen, Ditlev E.

Publication type:

Article

EF-G catalyzed translocation dynamics in the presence of ribosomal frameshifting stimulatory signals.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 5, p. 2865, doi. 10.1093/nar/gkw1020

By:

Hee-Kyung Kim;
Tinoco Jr, Ignacio

Publication type:

Article

hnRNPs and ELAVL1 cooperate with uORFs to inhibit protein translation.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 5, p. 2849, doi. 10.1093/nar/gkw991

By:

Jiewen Zhang;
Lijuan Kong;
Sichao Guo;
Mengmeng Bu;
Qian Guo;
Yuan Xiong;
Ning Zhu;
Chuan Qiu;
Xuejing Yan;
Qian Chen;
Hongfei Zhang;
Junling Zhuang;
Qiong Wang;
Samuel S. Zhang;
Yan Shen;
Meihong Chen

Publication type:

Article

FARNA: knowledgebase of inferred functions of non-coding RNA transcripts.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 5, p. 2838, doi. 10.1093/nar/gkw973

By:

Alam, Tanvir;
Uludag, Mahmut;
Essack, Magbubah;
Salhi, Adil;
Ashoor, Haitham;
Hanks, John B.;
Kapfer, Craig;
Mineta, Katsuhiko;
Gojobori, Takashi;
Bajic, Vladimir B.

Publication type:

Article

Structural analysis reveals the flexible C-terminus of Nop15 undergoes rearrangement to recognize a pre-ribosomal RNA folding intermediate.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 5, p. 2829, doi. 10.1093/nar/gkw961

By:

Jun Zhang;
Gonzalez, Lauren E.;
Hall, Traci M. Tanaka

Publication type:

Article

A novel role for GSK3β as a modulator of Drosha microprocessor activity and MicroRNA biogenesis.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 5, p. 2809, doi. 10.1093/nar/gkw938

By:

Fletcher, Claire E.;
Godfrey, Jack D.;
Shibakawa, Akifumi;
Bushell, Martin;
Bevan, Charlotte L.

Publication type:

Article

Harnessing human ADAR2 for RNA repair - Recoding a PINK1 mutation rescues mitophagy.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 5, p. 2797, doi. 10.1093/nar/gkw911

By:

Wettengel, Jacqueline;
Reautschnig, Philipp;
Geisler, Sven;
Kahle, Philipp J.;
Thorsten Stafforst

Publication type:

Article

Global and cell-type specific properties of lincRNAs with ribosome occupancy.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 5, p. 2786, doi. 10.1093/nar/gkw909

By:

Hongwei Wang;
Yan Wang;
Shangqian Xie;
Yizhi Liu;
Zhi Xie

Publication type:

Article

Transfer RNAs with novel cloverleaf structures.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 5, p. 2776, doi. 10.1093/nar/gkw898

By:

Mukai, Takahito;
Vargas-Rodriguez, Oscar;
Englert, Markus;
Tripp, H. James;
Ivanova, Natalia N.;
Rubin, Edward M.;
Kyrpides, Nikos C.;
Söll, Dieter

Publication type:

Article

Active 5' splice sites regulate the biogenesis efficiency of Arabidopsis microRNAs derived from intron-containing genes.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 5, p. 2757, doi. 10.1093/nar/gkw895

By:

Knop, Katarzyna;
Stepien, Agata;
Barciszewska-Pacak, Maria;
Taube, Michal;
Bielewicz, Dawid;
Michalak, Michal;
Borst, Jan W.;
Jarmolowski, Artur;
Szweykowska-Kulinska, Zofia

Publication type:

Article

Landscape of RNA polyadenylation in E. coli.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 5, p. 2746, doi. 10.1093/nar/gkw894

By:

Maes, Alexandre;
Gracia, Céline;
Innocenti, Nicolas;
Kaiyang Zhang;
Aurell, Erik;
Hajnsdorf, Eliane

Publication type:

Article

DNA flap creation by the RarA/MgsA protein of Escherichia coli.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 5, p. 2724, doi. 10.1093/nar/gkw1322

By:

Stanage, Tyler H.;
Page, Asher N.;
Cox, Michael M.

Publication type:

Article

DNA binding specificities of Escherichia coli Cas1-Cas2 integrase drive its recruitment at the CRISPR locus.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 5, p. 2714, doi. 10.1093/nar/gkw1309

By:

Moch, Clara;
Fromant, Michel;
Blanquet, Sylvain;
Plateau, Pierre

Publication type:

Article

Topoisomerase 3β is the major topoisomerase for mRNAs and linked to neurodevelopment and mental dysfunction.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 5, p. 2704, doi. 10.1093/nar/gkw1293

By:

Ahmad, Muzammil;
Weiping Shen;
Wen Li;
Yutong Xue;
Sige Zou;
Dongyi Xu;
Weidong Wang

Publication type:

Article

TLR4-induced NF-κB and MAPK signaling regulate the IL-6 mRNA stabilizing protein Arid5a.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 5, p. 2687, doi. 10.1093/nar/gkx064

By:

Nyati, Kishan K.;
Kazuya Masuda;
Zaman, Mohammad Mahabub-Uz;
Dubey, Praveen K.;
Millrine, David;
Chalise, Jaya P.;
Mitsuru Higa;
Songling Li;
Standley, Daron M.;
Kazunobu Saito;
Hamza Hanieh;
Tadamitsu Kishimoto

Publication type:

Article

SIRT7-dependent deacetylation of CDK9 activates RNA polymerase II transcription.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 5, p. 2675, doi. 10.1093/nar/gkx053

By:

Blank, Maximilian F.;
Sifan Chen;
Poetz, Fabian;
Schnölzer, Martina;
Voit, Renate;
Grummt, Ingrid

Publication type:

Article

In vivo evidence that eIF3 stays bound to ribosomes elongating and terminating on short upstream ORFs to promote reinitiation.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 5, p. 2658, doi. 10.1093/nar/gkx049

By:

Mohammad, Mahabub Pasha;
Pondělíčková, Vanda Munzarová;
Zeman, Jakub;
Gunišová, Stanislava;
Valášek, Leoš Shivaya

Publication type:

Article

Degradation of Mrc1 promotes recombination-mediated restart of stalled replication forks.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 5, p. 2558, doi. 10.1093/nar/gkw1249

By:

Chaudhury, Indrajit;
Koepp, Deanna M.

Publication type:

Article

Cancer-causing mutations in the tumor suppressor PALB2 reveal a novel cancer mechanism using a hidden nuclear export signal in the WD40 repeat motif.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 5, p. 2644, doi. 10.1093/nar/gkx011

By:

Pauty, Joris;
Couturier, Anthony M.;
Rodrigue, Amélie;
Caron, Marie-Christine;
Coulombe, Yan;
Dellaire, Graham;
Masson, Jean-Yves

Publication type:

Article

Alternative lengthening of telomeres can be maintained by preferential elongation of lagging strands.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 5, p. 2615, doi. 10.1093/nar/gkw1295

By:

Jaewon Min;
Wright, Woodring E.;
Shay, Jerry W.

Publication type:

Article

Ribonucleotide incorporation by human DNA polymerase η impacts translesion synthesis and RNase H2 activity.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 5, p. 2600, doi. 10.1093/nar/gkw1275

By:

Mentegari, Elisa;
Crespan, Emmanuele;
Bavagnoli, Laura;
Kissova, Miroslava;
Bertoletti, Federica;
Sabbioneda, Simone;
Imhof, Ralph;
Sturla, Shana J.;
Nilforoushan, Arman;
Hübscher, Ulrich;
van Loon, Barbara;
Maga, Giovanni

Publication type:

Article

Microhomology-mediated end joining is activated in irradiated human cells due to phosphorylation-dependent formation of the XRCC1 repair complex.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 5, p. 2585, doi. 10.1093/nar/gkw1262

By:

Dutta, Arijit;
Eckelmann, Bradley;
Adhikari, Sanjay;
Ahmed, Kazi Mokim;
Sengupta, Shiladitya;
Pandey, Arvind;
Hegde, Pavana M.;
Miaw-Sheue Tsai;
Tainer, John A.;
Weinfeld, Michael;
Hegde, Muralidhar L.;
Mitra, Sankar

Publication type:

Article

Inhibiting translation elongation can aid genome duplication in Escherichia coli.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 5, p. 2571, doi. 10.1093/nar/gkw1254

By:

Myka, Kamila K.;
Hawkins, Michelle;
Syeda, Aisha H.;
Gupta, Milind K.;
Meharg, Caroline;
Dillingham, Mark S.;
Savery, Nigel J.;
Lloyd, Robert G.;
McGlynn, Peter

Publication type:

Article

Proteogenomics produces comprehensive and highly accurate protein-coding gene annotation in a complete genome assembly of Malassezia sympodialis.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 5, p. 2629, doi. 10.1093/nar/gkx006

By:

Yafeng Zhu;
Engström, Pär G.;
Tellgren-Roth, Christian;
Baudo, Charles D.;
Kennell, John C.;
Sheng Sun;
Billmyre, R. Blake;
Schröder, Markus S.;
Andersson, Anna;
Holm, Tina;
Sigurgeirsson, Benjamin;
Guangxi Wu;
Sankaranarayanan, Sundar Ram;
Siddharthan, Rahul;
Sanyal, Kaustuv;
Lundeberg, Joakim;
Nystedt, Björn;
Boekhout, Teun;
Dawson Jr., Thomas L.;
Heitman, Joseph

Publication type:

Article

Overlapping roles for PARP1 and PARP2 in the recruitment of endogenous XRCC1 and PNKP into oxidized chromatin.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 5, p. 2546, doi. 10.1093/nar/gkw1246

By:

Hanzlikova, Hana;
Gittens, William;
Krejcikova, Katerina;
Zhihong Zeng;
Caldecott, Keith W.

Publication type:

Article

And-1 is required for homologous recombination repair by regulating DNA end resection.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 5, p. 2531, doi. 10.1093/nar/gkw1241

By:

Yongming Li;
Zongzhu Li;
Ruiqin Wu;
Zhiyong Han;
Wenge Zhu

Publication type:

Article

And-1 coordinates with CtIP for efficient homologous recombination and DNA damage checkpoint maintenance.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 5, p. 2516, doi. 10.1093/nar/gkw1212

By:

Yali Chen;
Hailong Liu;
Haoxing Zhang;
Changqing Sun;
Zhaohua Hu;
Qingsong Tian;
Changmin Peng;
Pei Jiang;
Hui Hua;
Xinzhi Li;
Huadong Pei

Publication type:

Article

Methyl-dependent and spatial-specific DNA recognition by the orthologous transcription factors human AP-1 and Epstein-Barr virus Zta.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 5, p. 2503, doi. 10.1093/nar/gkx057

By:

Samuel Hong;
Dongxue Wang;
Horton, John R.;
Xing Zhang;
Speck, Samuel H.;
Blumenthal, Robert M.;
Xiaodong Cheng

Publication type:

Article

Temporal association of ORCA/LRWD1 to late-firing origins during G1 dictates heterochromatin replication and organization.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 5, p. 2490, doi. 10.1093/nar/gkw1211

By:

Yating Wang;
Khan, Abid;
Marks, Anna B.;
Smith, Owen K.;
Giri, Sumanprava;
Yo-Chuen Lin;
Creager, Rachel;
MacAlpine, David M.;
Prasanth, Kannanganattu V.;
Aladjem, Mirit I.;
Prasanth, Supriya G.

Publication type:

Article

Folate deficiency facilitates recruitment of upstream binding factor to hot spots of DNA double-strand breaks of rRNA genes and promotes its transcription.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 5, p. 2472, doi. 10.1093/nar/gkw1208

By:

Qiu Xie;
Caihua Li;
Xiaozhen Song;
Lihua Wu;
Zhiyong Qiu;
Haiyan Cao;
Kaihui Yu;
Chunlei Wan;
Jianting Li;
Feng Yang;
Zebing Huang;
Bo niu;
Zhengwen Jiang;
Ting Zhang

Publication type:

Article

Sub1 contacts the RNA polymerase II stalk to modulate mRNA synthesis.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 5, p. 2458, doi. 10.1093/nar/gkw1206

By:

Garavís, Miguel;
González-Polo, Noelia;
Allepuz-Fuster, Paula;
Louro, Jaime Alegrio;
Fernández-Tornero, Carlos;
Calvo, Olga

Publication type:

Article

Binding of MBD proteins to DNA blocks Tet1 function thereby modulating transcriptional noise.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 5, p. 2438, doi. 10.1093/nar/gkw1197

By:

Ludwig, Anne K.;
Peng Zhang;
Hastert, Florian D.;
Meyer, Stephanie;
Rausch, Cathia;
Herce, Henry D.;
Müller, Udo;
Lehmkuh, Anne;
Hellmann, Ines;
Trummer, Carina;
Storm, Christian;
Leonhardt, Heinrich;
Cardoso, M. Cristina

Publication type:

Article

Competitive binding between Seryl-tRNA synthetase/YY1 complex and NFKB1 at the distal segment results in differential regulation of human vegfa promoter activity during angiogenesis.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 5, p. 2423, doi. 10.1093/nar/gkw1187

By:

Chuan-Yang Fu;
Po-Chun Wang;
Huai-Jen Tsai

Publication type:

Article

PATZ1 down-regulates FADS1 by binding to rs174557 and is opposed by SP1/SREBP1c.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 5, p. 2408, doi. 10.1093/nar/gkw1186

By:

Gang Pan;
Ameur, Adam;
Enroth, Stefan;
Bysani, Madhusudhan;
Nord, Helena;
Cavalli, Marco;
Essand, Magnus;
Gyllensten, Ulf;
Wadelius, Claes

Publication type:

Article

MAX is an epigenetic sensor of 5-carboxylcytosine and is altered in multiple myeloma.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 5, p. 2396, doi. 10.1093/nar/gkw1184

By:

Dongxue Wang;
Hashimoto, Hideharu;
Xing Zhang;
Barwick, Benjamin G.;
Lonial, Sagar;
Boise, Lawrence H.;
Vertino, Paula M.;
Cheng, Xiaodong

Publication type:

Article

Core binding factor (CBF) is required for Epstein-Barr virus EBNA3 proteins to regulate target gene expression.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 5, p. 2368, doi. 10.1093/nar/gkw1167

By:

Paschos, Kostas;
Bazot, Quentin;
Guiyi Ho;
Parker, Gillian A.;
Lees, Jonathan;
Barton, Geraint;
Allday, Martin J.

Publication type:

Article

Models of global gene expression define major domains of cell type and tissue identity.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 5, p. 2354, doi. 10.1093/nar/gkx054

By:

Hutchins, Andrew P.;
Zhongzhou Yang;
Yuhao Li;
Fangfang He;
Xiuling Fu;
Xiaoshan Wang;
Dongwei Li;
Kairong Liu;
Jiangping He;
Yong Wang;
Jiekai Chen;
Esteban, Miguel A.;
Duanqing Pei

Publication type:

Article

High-throughput identification of C/D box snoRNA targets with CLIP and RiboMeth-seq.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 5, p. 2341, doi. 10.1093/nar/gkw1321

By:

Gumienny, Rafal;
Jedlinski, Dominik J.;
Schmidt, Alexander;
Gypas, Foivos;
Martin, Georges;
Vina-Vilaseca, Arnau;
Zavolan, Mihaela

Publication type:

Article

Identification of endoribonuclease specific cleavage positions reveals novel targets of RNase III in Streptococcus pyogenes.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 5, p. 2329, doi. 10.1093/nar/gkw1316

By:

Le Rhun, Anaïs;
Lécrivain, Anne-Laure;
Reimegård, Johan;
Proux-Wéra, Estelle;
Broglia, Laura;
Beffa, Cristina Della;
Charpentier, Emmanuelle

Publication type:

Article

Human population-specific gene expression and transcriptional network modification with polymorphic transposable elements.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 5, p. 2318, doi. 10.1093/nar/gkw1286

By:

Lu Wang;
Rishishwar, Lavanya;
Mariño-Ramíırez, Leonardo;
Jordan, I. King

Publication type:

Article

Quantifying deleterious effects of regulatory variants.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 5, p. 2307, doi. 10.1093/nar/gkw1263

By:

Shan Li;
Alvarez, Roberto Vera;
Sharan, Roded;
Landsman, David;
Ovcharenko, Ivan

Publication type:

Article

Characterizing the effect of GalNAc and phosphorothioate backbone on binding of antisense oligonucleotides to the asialoglycoprotein receptor.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 5, p. 2294, doi. 10.1093/nar/gkx060

By:

Schmidt, Karsten;
Prakash, Thazha P.;
Donner, Aaron J.;
Kinberger, Garth A.;
Gaus, Hans J.;
Low, Audrey;
Østergaard, Michael E.;
Bell, Melanie;
Swayze, Eric E.;
Seth, Punit P.

Publication type:

Article