Works matching IS 03051048 AND DT 2017 AND VI 45 AND IP 8

Results: 67

Corrigendum.

Published in:: Nucleic Acids Research, 2017, v. 45, n. 8, p. 5010, doi. 10.1093/nar/gkx062
Publication type:: Article

An in vivo reporter assay for sRNA-directed gene control in Gram-positive bacteria: identifying a novel sRNA target in Staphylococcus aureus.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 8, p. 4994, doi. 10.1093/nar/gkx190

By:

Ivain, Lorraine;
Bordeau, Valérie;
Eyraud, Alex;
Hallier, Marc;
Dreano, Stéphane;
Tattevin, Pierre;
Felden, Brice;
Chabelskaya, Svetlana

Publication type:

Article

Engineering microbial phenotypes through rewiring of genetic networks.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 8, p. 4984, doi. 10.1093/nar/gkx197

By:

Windram, Oliver P. F.;
Rodrigues, Rui T. L.;
Sangjin Lee;
Haines, Matthew;
Bayer, Travis S.

Publication type:

Article

Ribosome-dependent Vibrio cholerae mRNAse HigB2 is regulated by a β-strand sliding mechanism.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 8, p. 4972, doi. 10.1093/nar/gkx138

By:

Hadži, San;
Garcia-Pino, Abel;
Haesaerts, Sarah;
Jurėnas, Dukas;
Gerdes, Kenn;
Lah, Jurij;
Loris, Remy

Publication type:

Article

Tracking fluctuation hotspots on the yeast ribosome through the elongation cycle.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 8, p. 4958, doi. 10.1093/nar/gkx112

By:

Gulay, Suna P.;
Bista, Sujal;
Varshney, Amitabh;
Kirmizialtin, Serdal;
Sanbonmatsu, Karissa Y.;
Dinman, Jonathan D.

Publication type:

Article

TIA-1 RRM23 binding and recognition of target oligonucleotides.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 8, p. 4944, doi. 10.1093/nar/gkx102

By:

Waris, Saboora;
García-Mauriño, Sofía M.;
Sivakumaran, Andrew;
Beckham, Simone A.;
Loughlin, Fionna E.;
Gorospe, Myriam;
Díaz-Moreno, Irene;
Wilce, Matthew C. J.;
Wilce, Jacqueline A.

Publication type:

Article

Alternative DNA structure formation in the mutagenic human c-MYC promoter.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 8, p. 4929, doi. 10.1093/nar/gkx100

By:

del Mundo, Imee Marie A.;
Zewail-Foote, Maha;
Kerwin, Sean M.;
Vasquez, Karen M.

Publication type:

Article

Crystal structures of the Arabidopsis thaliana organellar RNA editing factors MORF1 and MORF9.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 8, p. 4915, doi. 10.1093/nar/gkx099

By:

Haag, Sascha;
Schindler, Magdalena;
Berndt, Leona;
Brennicke, Axel;
Takenaka, Mizuki;
Weber, Gert

Publication type:

Article

Spatial confinement induces hairpins in nicked circular DNA.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 8, p. 4905, doi. 10.1093/nar/gkx098

By:

Japaridze, Aleksandre;
Orlandini, Enzo;
Smith, Kathleen Beth;
Gmür, Lucas;
Valle, Francesco;
Micheletti, Cristian;
Dietler, Giovanni

Publication type:

Article

Ensemble simulations: folding, unfolding and misfolding of a high-efficiency frameshifting RNA pseudoknot.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 8, p. 4893, doi. 10.1093/nar/gkx012

By:

Nguyen, Khai K. Q.;
Gomez, Yessica K.;
Bakhom, Mona;
Radcliffe, Amethyst;
Phuc La;
Rochelle, Dakota;
Ji Won Lee;
Sorin, Eric J.

Publication type:

Article

Histone-derived piRNA biogenesis depends on the ping-pong partners Piwi5 and Ago3 in Aedes aegypti.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 8, p. 4881, doi. 10.1093/nar/gkw1368

By:

Girardi, Erika;
Miesen, Pascal;
Pennings, Bas;
Frangeul, Lionel;
Saleh, Maria-Carla;
van Rij, Ronald P.

Publication type:

Article

USP15 regulates dynamic protein-protein interactions of the spliceosome through deubiquitination of PRP31.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 8, p. 4866, doi. 10.1093/nar/gkw1365

By:

Das, Tanuza;
Joon Kyu Park;
Jinyoung Park;
Eunji Kim;
Rape, Michael;
Eunice EunKyeong Kim;
Eun Joo Song

Publication type:

Article

The assembly factor Erb1 functions in multiple remodeling events during 60S ribosomal subunit assembly in S. cerevisiae.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 8, p. 4853, doi. 10.1093/nar/gkw1361

By:

Konikkat, Salini;
Biedka, Stephanie;
Woolford Jr, John L.

Publication type:

Article

NAP1L1 accelerates activation and decreases pausing to enhance nucleosome remodeling by CSB.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 8, p. 4696, doi. 10.1093/nar/gkx188

By:

Ju Yeon Lee;
Lake, Robert J.;
Jaewon Kirk;
Bohr, Vilhelm A.;
Hua-Ying Fan;
Sungchul Hohng

Publication type:

Article

Annealing helicase HARP closes RPA-stabilized DNA bubbles non-processively.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 8, p. 4687, doi. 10.1093/nar/gkx147

By:

Burnham, Daniel R.;
Nijholt, Bas;
De Vlaminck, Iwijn;
Quan, Jinhua;
Yusufzai, Timur;
Dekker, Cees

Publication type:

Article

In vivo cleavage specificity of Trypanosoma brucei editosome endonucleases.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 8, p. 4667, doi. 10.1093/nar/gkx116

By:

Carnes, Jason;
McDermott, Suzanne;
Anupama, Atashi;
Oliver, Brian G.;
Sather, D. Noah;
Stuart, Kenneth

Publication type:

Article

Inhibition of homologous phosphorolytic ribonucleases by citrate may represent an evolutionarily conserved communicative link between RNA degradation and central metabolism.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 8, p. 4655, doi. 10.1093/nar/gkx114

By:

Stone, Carlanne M.;
Butt, Louise E.;
Bufton, Joshua C.;
Lourenco, Daniel C.;
Gowers, Darren M.;
Pickford, Andrew R.;
Cox, Paul A.;
Vincent, Helen A.;
Callaghan, Anastasia J.

Publication type:

Article

The spacer size of I-B CRISPR is modulated by the terminal sequence of the protospacer.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 8, p. 4642, doi. 10.1093/nar/gkx229

By:

Ming Li;
Luyao Gong;
Dahe Zhao;
Jian Zhou;
Hua Xiang

Publication type:

Article

A DEAD-box protein acts through RNA to promote HIV-1 Rev-RRE assembly.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 8, p. 4632, doi. 10.1093/nar/gkx206

By:

Lamichhane, Rajan;
Hammond, John A.;
Pauszek III, Raymond F.;
Anderson, Rae M.;
Pedron, Ingemar;
van der Schans, Edwin;
Williamson, James R.;
Millar, David P.

Publication type:

Article

Aicardi-Goutières syndrome protein TREX1 suppresses L1 and maintains genome integrity through exonuclease-independent ORF1p depletion.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 8, p. 4619, doi. 10.1093/nar/gkx178

By:

Peng Li;
Juan Du;
Goodier, John L.;
Jingwei Hou;
Jian Kang;
Kazazian Jr, Haig H.;
Ke Zhao;
Xiao-Fang Yu

Publication type:

Article

Functional assessment of CTCF sites at cytokine-sensing mammary enhancers using CRISPR/Cas9 gene editing in mice.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 8, p. 4606, doi. 10.1093/nar/gkx185

By:

Hye Kyung Lee;
Willi, Michaela;
Chaochen Wang;
Chul Min Yang;
Smith, Harold E.;
Chengyu Liu;
Hennighausen, Lothar

Publication type:

Article

RAD51 interconnects between DNA replication, DNA repair and immunity.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 8, p. 4590, doi. 10.1093/nar/gkx126

By:

Bhattacharya, Souparno;
Srinivasan, Kalayarasan;
Abdisalaam, Salim;
Fengtao Su;
Raj, Prithvi;
Dozmorov, Igor;
Mishra, Ritu;
Wakeland, Edward K.;
Ghose, Subroto;
Mukherjee, Shibani;
Asaithamby, Aroumougame

Publication type:

Article

Repair of UV-induced DNA lesions in natural Saccharomyces cerevisiae telomeres is moderated by Sir2 and Sir3, and inhibited by yKu-Sir4 interaction.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 8, p. 4577, doi. 10.1093/nar/gkx123

By:

Guintini, Laetitia;
Tremblay, Maxime;
Toussaint, Martin;
D'Amours, Annie;
Wellinger, Ralf E.;
Wellinger, Raymund J.;
Conconi, Antonio

Publication type:

Article

Spartan deficiency causes accumulation of Topoisomerase 1 cleavage complexes and tumorigenesis.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 8, p. 4564, doi. 10.1093/nar/gkx107

By:

Maskey, Reeja S.;
Flatten, Karen S.;
Sieben, Cynthia J.;
Peterson, Kevin L.;
Baker, Darren J.;
Hyun-Ja Nam;
Myoung Shin Kim;
Smyrk, Thomas C.;
Yusuke Kojima;
Yuka Machida;
Annyoceli Santiago;
van Deursen, Jan M.;
Kaufmann, Scott H.;
Machida, Yuichi J.

Publication type:

Article

Human CTF18-RFC clamp-loader complexed with non-synthesising DNA polymerase ε efficiently loads the PCNA sliding clamp.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 8, p. 4550, doi. 10.1093/nar/gkx096

By:

Ryo Fujisawa;
Eiji Ohashi;
Kouji Hirota;
Toshiki Tsurimoto

Publication type:

Article

Ataxin-3 promotes genome integrity by stabilizing Chk1.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 8, p. 4532, doi. 10.1093/nar/gkx095

By:

Yingfeng Tu;
Hongmei Liu;
Xuefei Zhu;
Hongyan Shen;
Xiaolu Ma;
Fengli Wang;
Min Huang;
Juanjuan Gong;
Xiaoling Li;
Yun Wang;
Caixia Guo;
Tie-Shan Tang

Publication type:

Article

Differential requirement of Srs2 helicase and Rad51 displacement activities in replication of hairpin-forming CAG/CTG repeats.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 8, p. 4519, doi. 10.1093/nar/gkx088

By:

Nguyen, Jennifer H. G.;
Viterbo, David;
Anand, Ranjith P.;
Verra, Lauren;
Sloan, Laura;
Richard, Guy-Franck;
Freudenreich, Catherine H.

Publication type:

Article

Architectural plasticity of human BRCA2-RAD51 complexes in DNA break repair.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 8, p. 4507, doi. 10.1093/nar/gkx084

By:

Sánchez, Humberto;
Paul, Maarten W.;
Grosbart, Ma-lgorzata;
van Rossum-Fikkert, Sarah E.;
Lebbink, Joyce H. G.;
Kanaar, Roland;
Houtsmuller, Adriaan B.;
Wyman, Claire

Publication type:

Article

Abf1 and other general regulatory factors control ribosome biogenesis gene expression in budding yeast.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 8, p. 4493, doi. 10.1093/nar/gkx058

By:

Bosio, Maria Cristina;
Fermi, Beatrice;
Spagnoli, Gloria;
Levati, Elisabetta;
Rubbi, Ludmilla;
Ferrari, Roberto;
Pellegrini, Matteo;
Dieci, Giorgio

Publication type:

Article

Long non-coding RNAs transcribed by ERV-9 LTR retrotransposon act in cis to modulate long-range LTR enhancer function.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 8, p. 4479, doi. 10.1093/nar/gkx055

By:

Tianxiang Hu;
Wenhu Pi;
Xingguo Zhu;
Miao Yu;
Hongseok Ha;
Huidong Shi;
Jeong-Hyeon Choi;
Dorothy Tuan

Publication type:

Article

Deciphering the DNA code for the function of the Drosophila polydactyl zinc finger protein Suppressor of Hairy-wing.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 8, p. 4463, doi. 10.1093/nar/gkx040

By:

Baxley, Ryan M.;
Bullard, James D.;
Klein, Michael W.;
Fell, Ashley G.;
Morales-Rosado, Joel A.;
Duan, Tingting;
Geyer, Pamela K.

Publication type:

Article

Interaction with ZMYND11 mediates opposing roles of Ras-responsive transcription factors ETS1 and ETS2.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 8, p. 4452, doi. 10.1093/nar/gkx039

By:

Plotnik, Joshua P.;
Hollenhorst, Peter C.

Publication type:

Article

Wide-ranging and unexpected consequences of altered Pol II catalytic activity in vivo.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 8, p. 4431, doi. 10.1093/nar/gkx037

By:

Malik, Indranil;
Chenxi Qiu;
Snavely, Thomas;
Kaplan, Craig D.

Publication type:

Article

Sas3 and Ada2(Gcn5)-dependent histone H3 acetylation is required for transcription elongation at the de-repressed FLO1 gene.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 8, p. 4413, doi. 10.1093/nar/gkx028

By:

Church, Michael;
Smith, Kim C.;
Alhussain, Mohamed M.;
Pennings, Sari;
Fleming, Alastair B.

Publication type:

Article

Sustained expression of miR-26a promotes chromosomal instability and tumorigenesis through regulation of CHFR.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 8, p. 4401, doi. 10.1093/nar/gkx022

By:

Castellano, Leandro;
Dabrowska, Aleksandra;
Pellegrino, Loredana;
Ottaviani, Silvia;
Cathcart, Paul;
Frampton, Adam E.;
Krell, Jonathan;
Stebbing, Justin

Publication type:

Article

Body-hypomethylated human genes harbor extensive intragenic transcriptional activity and are prone to cancer-associated dysregulation.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 8, p. 4390, doi. 10.1093/nar/gkx020

By:

Mendizabal, Isabel;
Jia Zeng;
Keller, Thomas E.;
Yi, Soojin V.

Publication type:

Article

The novel lysine specific methyltransferase METTL21B affects mRNA translation through inducible and dynamic methylation of Lys-165 in human eukaryotic elongation factor 1 alpha (eEF1A).

Published in:

Nucleic Acids Research, 2017, v. 45, n. 8, p. 4370, doi. 10.1093/nar/gkx002

By:

Maƚecki, Jędrzej;
Aileni, Vinay Kumar;
Ho, Angela Y. Y.;
Schwarz, Juliane;
Moen, Anders;
Sørensen, Vigdis;
Nilges, Benedikt S.;
Jakobsson, Magnus E.;
Leidel, Sebastian A.;
Falnes, Pål Ø.

Publication type:

Article

PRMT5 regulates IRES-dependent translation via methylation of hnRNP A1.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 8, p. 4359, doi. 10.1093/nar/gkw1367

By:

Guozhen Gao;
Dhar, Surbhi;
Bedford, Mark T.

Publication type:

Article

Dynamically and epigenetically coordinated GATA/ETS/SOX transcription factor expression is indispensable for endothelial cell differentiation.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 8, p. 4344, doi. 10.1093/nar/gkx159

By:

Yasuharu Kanki;
Ryo Nakaki;
Teppei Shimamura;
Taichi Matsunaga;
Kohei Yamamizu;
Shiori Katayama;
Jun-ichi Suehiro;
Tsuyoshi Osawa;
Hiroyuki Aburatani;
Tatsuhiko Kodama;
Youichiro Wada;
Yamashita, Jun K.;
Takashi Minami

Publication type:

Article

Tracking the evolution of 3D gene organization demonstrates its connection to phenotypic divergence.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 8, p. 4330, doi. 10.1093/nar/gkx205

By:

Diament, Alon;
Tuller, Tamir

Publication type:

Article

Mocap: large-scale inference of transcription factor binding sites from chromatin accessibility.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 8, p. 4315, doi. 10.1093/nar/gkx174

By:

Xi Chen;
Bowen Yu;
Carriero, Nicholas;
Silva, Claudio;
Bonneau, Richard

Publication type:

Article

Programmable i-motif DNA folding topology for a pH-switched reversible molecular sensing device.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 8, p. 4306, doi. 10.1093/nar/gkx202

By:

Lili Shi;
Pai Peng;
Yi Du;
Tao Li

Publication type:

Article

Clustered abasic lesions profoundly change the structure and stability of human telomeric G-quadruplexes.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 8, p. 4294, doi. 10.1093/nar/gkx191

By:

Kejnovská, Iva;
Bednářová, Klára;
Renčiuk, Daniel;
Dvořáková, Zuzana;
Školáková, Petra;
Trantírek, Lukáš;
Fiala, Radovan;
Vorlíčková, Michaela;
Sagi, Janos

Publication type:

Article

NAR Breakthrough Article CTC1-mediated C-strand fill-in is an essential step in telomere length maintenance.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 8, p. 4281, doi. 10.1093/nar/gkx125

By:

Xuyang Feng;
Shih-Jui Hsu;
Kasbek, Christopher;
Chaiken, Mary;
Price, Carolyn M.

Publication type:

Article

TSSPlant: a new tool for prediction of plant Pol II promoters.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 8, p. 1, doi. 10.1093/nar/gkw1353

By:

Shahmuradov, Ilham A.;
Umarov, Ramzan Kh.;
Solovyev, Victor V.

Publication type:

Article

Determination of the conformational ensemble of the TAR RNA by X-ray scattering interferometry.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 8, p. 1, doi. 10.1093/nar/gkw1352

By:

Xuesong Shi;
Walker, Peter;
Harbury, Pehr B.;
Herschlag, Daniel

Publication type:

Article

SF3b1 mutations associated with myelodysplastic syndromes alter the fidelity of branchsite selection in yeast.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 8, p. 4837, doi. 10.1093/nar/gkw1349

By:

Carrocci, Tucker J.;
Zoerner, Douglas M.;
Paulson, Joshua C.;
Hoskins, Aaron A.

Publication type:

Article

C5-substituents of uridines and 2-thiouridines present at the wobble position of tRNA determine the formation of their keto-enol or zwitterionic forms - a factor important for accuracy of reading of guanosine at the 3'-end of the mRNA codons.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 8, p. 4825, doi. 10.1093/nar/gkw1347

By:

Sochacka, Elzbieta;
Lodyga-Chruscinska, Elzbieta;
Pawlak, Justyna;
Cypryk, Marek;
Bartos, Paulina;
Ebenryter-Olbinska, Katarzyna;
Leszczynska, Grazyna;
Nawrot, Barbara

Publication type:

Article

microRNAs stimulate translation initiation mediated by HCV-like IRESes.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 8, p. 4810, doi. 10.1093/nar/gkw1345

By:

Mengardi, Chloé;
Limousin, Taran;
Ricci, Emiliano P.;
Soto-Rifo, Ricardo;
Decimo, Didier;
Ohlmann, Théophile

Publication type:

Article

The ribosome biogenesis factor yUtp23/hUTP23 coordinates key interactions in the yeast and human pre-40S particle and hUTP23 contains an essential PIN domain.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 8, p. 4796, doi. 10.1093/nar/gkw1344

By:

Wells, Graeme R.;
Weichmann, Franziska;
Sloan, Katherine E.;
Colvin, David;
Watkins, Nicholas J.;
Schneider, Claudia

Publication type:

Article