Works matching IS 03051048 AND DT 2017 AND VI 45 AND IP 4

Results: 76

SIRT6 interacts with TRF2 and promotes its degradation in response to DNA damage.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 4, p. 1820, doi. 10.1093/nar/gkw1202

By:

Rizzo, Angela;
Iachettini, Sara;
Salvati, Erica;
Zizza, Pasquale;
Maresca, Carmen;
D’Angelo, Carmen;
Benarroch-Popivker, Delphine;
Capolupo, Angela;
del Gaudio, Federica;
Cosconati, Sandro;
DiMaro, Salvatore;
Merlino, Francesco;
Novellino, Ettore;
Amoreo, Carla Azzurra;
Mottolese, Marcella;
Sperduti, Isabella;
Gilson, Eric;
Biroccio, Annamaria

Publication type:

Article

Specific targeting of telomeric multimeric G-quadruplexes by a new triaryl-substituted imidazole.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 4, p. 1606, doi. 10.1093/nar/gkw1195

By:

Ming-Hao Hu;
Shuo-Bin Chen;
Bo Wang;
Tian-Miao Ou;
Lian-Quan Gu;
Jia-Heng Tan;
Zhi-Shu Huang

Publication type:

Article

A hydantoin isoform of cyclic N6-threonylcarbamoyladenosine (ct6A) is present in tRNAs.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 4, p. 2137, doi. 10.1093/nar/gkw1189

By:

Matuszewski, Michal;
Wojciechowski, Jakub;
Miyauchi, Kenjyo;
Gdaniec, Zofia;
Wolf, Wojciech M.;
Suzuki, Tsutomu;
Sochacka, Elzbieta

Publication type:

Article

Role of the chromatin landscape and sequence in determining cell type-specific genomic glucocorticoid receptor binding and gene regulation.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 4, p. 1805, doi. 10.1093/nar/gkw1163

By:

Love, Michael I.;
Huska, Matthew R.;
Jurk, Marcel;
Schöpflin, Robert;
Starick, Stephan R.;
Schwahn, Kevin;
Cooper, Samantha B.;
Yamamoto, Keith R.;
Thomas-Chollier, Morgane;
Vingron, Martin;
Meijsing, Sebastiaan H.

Publication type:

Article

Identification of a novel K311 ubiquitination site critical for androgen receptor transcriptional activity.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 4, p. 1793, doi. 10.1093/nar/gkw1162

By:

McClurg, Urszula L.;
Cork, David M. W.;
Darby, Steven;
Ryan-Munden, Claudia A.;
Nakjang, Sirintra;
Mendes Côrtes, Leticia;
Treumann, Achim;
Gaughan, Luke;
Robson, Craig N.

Publication type:

Article

ING1 regulates rRNA levels by altering nucleolar chromatin structure and mTOR localization.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 4, p. 1776, doi. 10.1093/nar/gkw1161

By:

Rajarajacholan, Uma Karthika;
Thalappilly, Subhash;
Riabowol, Karl

Publication type:

Article

A type III-B CRISPR-Cas effector complex mediating massive target DNA destruction.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 4, p. 1983, doi. 10.1093/nar/gkw1274

By:

Wenyuan Han;
Yingjun Li;
Ling Deng;
Mingxia Feng;
Wenfang Peng;
Hallstrøm, Søren;
Jing Zhang;
Nan Peng;
Yun Xiang Liang;
White, Malcolm F.;
Qunxin She

Publication type:

Article

Activation mode of the eukaryotic m2G10 tRNA methyltransferase Trm11 by its partner protein Trm112.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 4, p. 1971, doi. 10.1093/nar/gkw1271

By:

Bourgeois, Gabrielle;
Marcoux, Julien;
Saliou, Jean-Michel;
Cianférani, Sarah;
Graille, Marc

Publication type:

Article

CRISPR-Cas type I-A Cascade complex couples viral infection surveillance to host transcriptional regulation in the dependence of Csa3b.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 4, p. 1902, doi. 10.1093/nar/gkw1265

By:

Fei He;
Vestergaard, Gisle;
Wenfang Peng;
Qunxin She;
Xu Peng

Publication type:

Article

Autoregulation of MBNL1 function by exon 1 exclusion from MBNL1 transcript.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 4, p. 1760, doi. 10.1093/nar/gkw1158

By:

Konieczny, Patryk;
Stepniak-Konieczna, Ewa;
Taylor, Katarzyna;
Sznajder, Łukasz J.;
Sobczak, Krzysztof

Publication type:

Article

The KDM5 family is required for activation of pro-proliferative cell cycle genes during adipocyte differentiation.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 4, p. 1743, doi. 10.1093/nar/gkw1156

By:

Brier, Ann-Sofie B.;
Loft, Anne;
Madsen, Jesper G. S.;
Rosengren, Thomas;
Nielsen, Ronni;
Schmidt, Søren F.;
Zongzhi Liu;
Qin Yan;
Gronemeyer, Hinrich;
Mandrup, Susanne

Publication type:

Article

Extreme mutation bias and high AT content in Plasmodium falciparum.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 4, p. 1889, doi. 10.1093/nar/gkw1259

By:

Hamilton, William L.;
Claessens, Antoine;
Otto, Thomas D.;
Kekre, Mihir;
Fairhurst, Rick M.;
Rayner, Julian C.;
Kwiatkowski, Dominic

Publication type:

Article

The adenovirus L4-22K protein regulates transcription and RNA splicing via a sequence-specific single-stranded RNA binding.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 4, p. 1731, doi. 10.1093/nar/gkw1145

By:

Lan, Susan;
Kamel, Wael;
Punga, Tanel;
Akusjärvi, Göran

Publication type:

Article

DNA polymerase β contains a functional nuclear localization signal at its N-terminus

Published in:

Nucleic Acids Research, 2017, v. 45, n. 4, p. 1958, doi. 10.1093/nar/gkw1257

By:

Kirby, Thomas W.;
Gassman, Natalie R.;
Smith, Cassandra E.;
Ming-Lang Zhao;
Horton, Julie K.;
Wilson, Samuel H.;
London, Robert E.

Publication type:

Article

Large-scale mapping of mammalian transcriptomes identifies conserved genes associated with different cell states.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 4, p. 1657, doi. 10.1093/nar/gkw1256

By:

Yang Yang;
Yang, Yu-Cheng T.;
Jiapei Yuan;
Zhi John Lu;
Jingyi Jessica Li

Publication type:

Article

Integrative FourD omics approach profiles the target network of the carbon storage regulatory system.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 4, p. 1673, doi. 10.1093/nar/gkx048

By:

Sowa, Steven W.;
Gelderman, Grant;
Leistra, Abigail N.;
Buvanendiran, Aishwarya;
Lipp, Sarah;
Pitaktong, Areen;
Vakulskas, Christopher A.;
Romeo, Tony;
Baldea, Michael;
Contreras, Lydia M.

Publication type:

Article

Identification of 2-methylthio cyclic N6-threonylcarbamoyladenosine (ms2ct6A) as a novel RNA modification at position 37 of tRNAs.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 4, p. 2124, doi. 10.1093/nar/gkw1120

By:

Kang, Byeong-il;
Miyauchi, Kenjyo;
Matuszewski, Michal;
D’Almeida, Gabriel Silveira;
Rubio, Mary Anne T.;
Alfonzo, Juan D.;
Inoue, Kazuki;
Yuriko Sakaguchi;
Suzuki, Takeo;
Sochacka, Elzbieta;
Suzuki, Tsutomu

Publication type:

Article

The action of Escherichia coli CRISPR–Cas system on lytic bacteriophages with different lifestyles and development strategies.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 4, p. 1946, doi. 10.1093/nar/gkx042

By:

Strotskaya, Alexandra;
Savitskaya, Ekaterina;
Metlitskaya, Anastasia;
Morozova, Natalia;
Datsenko, Kirill A.;
Semenova, Ekaterina;
Severinov, Konstantin

Publication type:

Article

Interstrand cross-linking implies contrasting structural consequences for DNA: insights from molecular dynamics.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 4, p. 2188, doi. 10.1093/nar/gkw1253

By:

Bignon, Emmanuelle;
Dršata, Tomáš;
Morell, Christophe;
Lankaš, Filip;
Dumont, Elise

Publication type:

Article

Non-canonical targets destabilize microRNAs in human Argonautes.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 4, p. 1569, doi. 10.1093/nar/gkx029

By:

Park, June Hyun;
Sang-Yoon Shin;
Chanseok Shin

Publication type:

Article

Structure of a 30S pre-initiation complex stalled by GE81112 reveals structural parallels in bacterial and eukaryotic protein synthesis initiation pathways

Published in:

Nucleic Acids Research, 2017, v. 45, n. 4, p. 2179, doi. 10.1093/nar/gkw1251

By:

López-Alonso, Jorge P.;
Fabbretti, Attilio;
Kaminishi, Tatsuya;
Iturrioz, Idoia;
Brandi, Letizia;
Gil-Carton, David;
Gualerzi, Claudio O.;
Fucini, Paola;
Connell, Sean R.

Publication type:

Article

k-SLAM: accurate and ultra-fast taxonomic classification and gene identification for large metagenomic data sets.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 4, p. 1649, doi. 10.1093/nar/gkw1248

By:

Ainsworth, David;
Sternberg, Michael J. E.;
Raczy, Come;
Butcher, Sarah A.

Publication type:

Article

Functionally-interdependent shape-switching nanoparticles with controllable properties.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 4, p. 2210, doi. 10.1093/nar/gkx008

By:

Halman, Justin R.;
Satterwhite, Emily;
Roark, Brandon;
Chandler, Morgan;
Viard, Mathias;
Ivanina, Anna;
Bindewald, Eckart;
Kasprzak, Wojciech K.;
Panigaj, Martin;
Bui, My N.;
Lu, Jacob S.;
Miller, Johann;
Khisamutdinov, Emil F.;
Shapiro, Bruce A.;
Dobrovolskaia, Marina A.;
Afonin, Kirill A.

Publication type:

Article

Different enhancer classes in Drosophila bind distinct architectural proteins and mediate unique chromatin interactions and 3D architecture.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 4, p. 1714, doi. 10.1093/nar/gkw1114

By:

Cubeñas-Potts, Caelin;
Rowley, M. Jordan;
Xiaowen Lyu;
Ge Li;
Lei, Elissa P.;
Corces, Victor G.

Publication type:

Article

The AibR-isovaleryl coenzyme A regulator and its DNA binding site – a model for the regulation of alternative de novo isovaleryl coenzyme A biosynthesis in Myxococcus xanthus.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 4, p. 2166, doi. 10.1093/nar/gkw1238

By:

Bock, Tobias;
Volz, Carsten;
Hering, Vanessa;
Scrima, Andrea;
Müller, Rolf;
Blankenfeldt, Wulf

Publication type:

Article

Homozygous and hemizygous CNV detection from exome sequencing data in a Mendelian disease cohort.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 4, p. 1633, doi. 10.1093/nar/gkw1237

By:

Gambin, Tomasz;
Akdemir, Zeynep C.;
Bo Yuan;
Shen Gu;
Chiang, Theodore;
Carvalho, Claudia M. B.;
Shaw, Chad;
Jhangiani, Shalini;
Boone, Philip M.;
Eldomery, Mohammad K.;
Karaca, Ender;
Bayram, Yavuz;
Stray-Pedersen, Asbjørg;
Muzny, Donna;
Wu-Lin Charng;
Bahrambeigi, Vahid;
Belmont, John W.;
Boerwinkle, Eric;
Beaudet, Arthur L.;
Gibbs, Richard A.

Publication type:

Article

FACT is a sensor of DNA torsional stress in eukaryotic cells.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 4, p. 1925, doi. 10.1093/nar/gkw1366

By:

Safina, Alfiya;
Cheney, Peter;
Pal, Mahadeb;
Brodsky, Leonid;
Ivanov, Alexander;
Kirsanov, Kirill;
Lesovaya, Ekaterina;
Naberezhnov, Denis;
Nesher, Elimelech;
Koman, Igor;
Dan Wang;
Jianming Wang;
Yakubovskaya, Marianna;
Winkler, Duane;
Gurova, Katerina

Publication type:

Article

Efficient targeted DNA methylation with chimeric dCas9–Dnmt3a–Dnmt3L methyltransferase.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 4, p. 1703, doi. 10.1093/nar/gkw1112

By:

Stepper, Peter;
Kungulovski, Goran;
Jurkowska, Renata Z.;
Chandra, Tamir;
Krueger, Felix;
Reinhardt, Richard;
Reik, Wolf;
Jeltsch, Albert;
Jurkowski, Tomasz P.

Publication type:

Article

Homologous recombination in budding yeast expressing the human RAD52 gene reveals a Rad51-independent mechanism of conservative double-strand break repair.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 4, p. 1879, doi. 10.1093/nar/gkw1228

By:

Manthey, Glenn M.;
Clear, Alissa D.;
Liddell, Lauren C.;
Negritto, Maria C.;
Bailis, Adam M.

Publication type:

Article

Mapping the affinity landscape of Thrombin-binding aptamers on 2΄F-ANA/DNA chimeric G-Quadruplex microarrays.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 4, p. 1619, doi. 10.1093/nar/gkw1357

By:

Lietard, Jory;
Assi, Hala Abou;
Gómez-Pinto, Irene;
González, Carlos;
Somoza, Mark M.;
Damha, Masad J.

Publication type:

Article

Histone demethylase PHF8 promotes epithelial to mesenchymal transition and breast tumorigenesis.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 4, p. 1687, doi. 10.1093/nar/gkw1093

By:

Peng Shao;
Qi Liu;
Maina, Peterson Kariuki;
Jiayue Cui;
Bair, Thomas B.;
Tiandao Li;
Umesalma, Shaikamjad;
Weizhou Zhang;
Hank Heng Qi

Publication type:

Article

Bridging of double-stranded breaks by the nonhomologous end-joining ligation complex is modulated by DNA end chemistry.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 4, p. 1872, doi. 10.1093/nar/gkw1221

By:

Reid, Dylan A.;
Conlin, Michael P.;
Yandong Yin;
Chang, Howard H.;
Go Watanabe;
Lieber, Michael R.;
Ramsden, Dale A.;
Rothenberg, Eli

Publication type:

Article

GB3.0: a platform for plant bio-design that connects functional DNA elements with associated biological data.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 4, p. 2196, doi. 10.1093/nar/gkw1326

By:

Quijano-Rubio, Alfredo;
Vazquez-Vilar, Marta;
Fernandez-del-Carmen, Asun;
Sarrion-Perdigones, Alejandro;
Ochoa-Fernandez, Rocio;
Ziarsolo, Peio;
Blanca, José;
Granell, Antonio;
Orzaez, Diego

Publication type:

Article

Allosteric regulation of helicase core activities of the DEAD-box helicase YxiN by RNA binding to its RNA recognition motif.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 4, p. 1994, doi. 10.1093/nar/gkx014

By:

Samatanga, Brighton;
Andreou, Alexandra Z.;
Klostermeier, Dagmar

Publication type:

Article

Discriminative identification of transcriptional responses of promoters and enhancers after stimulus.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 4, p. 1, doi. 10.1093/nar/gkw1015

By:

Kleftogiannis, Dimitrios;
Kalnis, Panos;
Arner, Erik;
Bajic, Vladimir B.

Publication type:

Article

Antibacterial and antivirulence effect of 6-N-hydroxylaminopurine in Listeria monocytogenes.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 4, p. 1914, doi. 10.1093/nar/gkw1308

By:

Krajewski, Stefanie Sandra;
Isoz, Isabelle;
Johansson, Jörgen

Publication type:

Article

RMI1 and TOP3α limit meiotic CO formation through their C-terminal domains.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 4, p. 1860, doi. 10.1093/nar/gkw1210

By:

Séguéla-Arnaud, Mathilde;
Choinard, Sandrine;
Larchevêque, Cécile;
Girard, Chloé;
Froger, Nicole;
Crismani, Wayne;
Mercier, Raphael

Publication type:

Article

A Novel method for the simultaneous identification of methylcytosine and hydroxymethylcytosine at a single base resolution.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 4, p. 1, doi. 10.1093/nar/gkw994

By:

Yuki Kawasaki;
Yukiko Kuroda;
Isao Suetake;
Shoji Tajima;
Fumitoshi Ishino;
Takashi Kohda

Publication type:

Article

Counting the ions surrounding nucleic acids.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 4, p. 1596, doi. 10.1093/nar/gkw1305

By:

Jacobson, David R.;
Saleh, Omar A.

Publication type:

Article

Histone chaperone activity of Arabidopsis thaliana NRP1 is blocked by cytochrome c.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 4, p. 2150, doi. 10.1093/nar/gkw1215

By:

González-Arzola, Katiuska;
Díaz-Quintana, Antonio;
Rivero-Rodríguez, Francisco;
Velázquez-Campoy, Adrián;
De la Rosa, Miguel A.;
Díaz-Moreno, Irene

Publication type:

Article

SFPQ•NONO and XLF function separately and together to promote DNA double-strand break repair via canonical nonhomologous end joining.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 4, p. 1848, doi. 10.1093/nar/gkw1209

By:

Jaafar, Lahcen;
Zhentian Li;
Shuyi Li;
Dynan, William S.

Publication type:

Article

RNA G-quadruplexes: emerging mechanisms in disease.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 4, p. 1584, doi. 10.1093/nar/gkw1280

By:

Cammas, Anne;
Millevoi, Stefania

Publication type:

Article

The homologous recombination protein RAD51D protects the genome from large deletions.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 4, p. 1835, doi. 10.1093/nar/gkw1204

By:

Reh, Wade A.;
Nairn, Rodney S.;
Lowery, Megan P.;
Vasquez, Karen M.

Publication type:

Article

Synthetic spike-in standards for high-throughput 16S rRNA gene amplicon sequencing.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 4, p. 1, doi. 10.1093/nar/gkw984

By:

Tourlousse, Dieter M.;
Yoshiike, Satowa;
Akiko Ohashi;
Satoko Matsukura;
Noda, Naohiro;
Yuji Sekiguchi

Publication type:

Article

Comprehensive characterization, annotation and innovative use of Infinium DNA methylation BeadChip probes.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 4, p. 1, doi. 10.1093/nar/gkw967

By:

Wanding Zhou;
Laird, Peter W.;
Hui Shen

Publication type:

Article

A prior-based integrative framework for functional transcriptional regulatory network inference.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 4, p. 1, doi. 10.1093/nar/gkw1160

By:

Siahpirani, Alireza F.;
Roy, Sushmita

Publication type:

Article

Using predictive specificity to determine when gene set analysis is biologically meaningful.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 4, p. 1, doi. 10.1093/nar/gkw957

By:

Ballouz, Sara;
Pavlidis, Paul;
Gillis, Jesse

Publication type:

Article

CISMAPPER: predicting regulatory interactions from transcription factor ChIP-seq data.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 4, p. 1, doi. 10.1093/nar/gkw956

By:

O’Connor, Timothy;
Bodén, Mikael;
Bailey, Timothy L.

Publication type:

Article

NOVOPlasty: de novo assembly of organelle genomes from whole genome data.

Published in:: Nucleic Acids Research, 2017, v. 45, n. 4, p. 1, doi. 10.1093/nar/gkw955
Publication type:: Article

TETOOLS facilitates big data expression analysis of transposable elements and reveals an antagonism between their activity and that of piRNA genes.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 4, p. 1, doi. 10.1093/nar/gkw953

By:

Lerat, Emmanuelle;
Fablet, Marie;
Modolo, Laurent;
Lopez-Maestre, Hélène;
Vieira, Cristina

Publication type:

Article