Works matching IS 03051048 AND DT 2016 AND VI 44 AND IP 1

Results: 151

A human transcription factor in search mode.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 1, p. 63, doi. 10.1093/nar/gkv1091

By:

Hauser, Kevin;
Essuman, Bernard;
Yiqing He;
Coutsias, Evangelos;
Garcia-Diaz, Miguel;
Simmerling, Carlos

Publication type:

Article

L1 retrotransposition requires rapid ORF1p oligomerization, a novel coiled coil-dependent property conserved despite extensive remodeling.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 1, p. 281, doi. 10.1093/nar/gkv1342

By:

Naufer, M. Nabuan;
Callahan, Kathryn E.;
Cook, Pamela R.;
Perez-Gonzalez, Cesar E.;
Williams, Mark C.;
Furano, Anthony V.

Publication type:

Article

MethylAction: detecting differentially methylated regions that distinguish biological subtypes.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 1, p. 106, doi. 10.1093/nar/gkv1461

By:

Bhasin, Jeffrey M.;
Hu, Bo;
Ting, Angela H.

Publication type:

Article

Cap homeostasis is independent of poly(A) tail length.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 1, p. 304, doi. 10.1093/nar/gkv1460

By:

Kiss, Daniel L.;
Oman, Kenji M.;
Dougherty, Julie A.;
Mukherjee, Chandrama;
Bundschuh, Ralf;
Schoenberg, Daniel R.

Publication type:

Article

MMB-GUI: a fast morphing method demonstrates a possible ribosomal tRNA translocation trajectory.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 1, p. 95, doi. 10.1093/nar/gkv1457

By:

Tek, Alex;
Korostelev, Andrei A.;
Flores, Samuel Coulbourn

Publication type:

Article

Temperature dependent mistranslation in a hyperthermophile adapts proteins to lower temperatures.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 1, p. 294, doi. 10.1093/nar/gkv1379

By:

Schwartz, Michael H.;
Pan, Tao

Publication type:

Article

A DNAzyme requiring two different metal ions at two distinct sites.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 1, p. 354, doi. 10.1093/nar/gkv1346

By:

Wenhu Zhou;
Zhang, Yupei;
Jimmy Huang, Po-Jung;
Jinsong Ding;
Juewen Liu

Publication type:

Article

Dealing with the genetic load in bacterial synthetic biology circuits: convergences with the Ohm’s law.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 1, p. 496, doi. 10.1093/nar/gkv1280

By:

Carbonell-Ballestero, M.;
Garcia-Ramallo, E.;
Montañez, R.;
Rodriguez-Caso, C.;
Macía, J.

Publication type:

Article

Probing the reactivity of singlet oxygen with purines.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 1, p. 56, doi. 10.1093/nar/gkv1364

By:

Dumont, Elise;
Grüber, Raymond;
Bignon, Emmanuelle;
Morell, Christophe;
Moreau, Yohann;
Monari, Antonio;
Ravanat, Jean-Luc

Publication type:

Article

RNA-seq reveals post-transcriptional regulation of Drosophila insulin-like peptide dilp8 and the neuropeptide-like precursor Nplp2 by the exoribonuclease Pacman/XRN1.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 1, p. 267, doi. 10.1093/nar/gkv1336

By:

Jones, Christopher I.;
Pashler, Amy L.;
Towler, Benjamin P.;
Robinson, Sophie R.;
Newbury, Sarah F.

Publication type:

Article

On the role of steric clashes in methylation control of restriction endonuclease activity.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 1, p. 485, doi. 10.1093/nar/gkv1341

By:

Mierzejewska, Karolina;
Bochtler, Matthias;
Czapinska, Honorata

Publication type:

Article

Systematic identification and annotation of human methylation marks based on bisulfite sequencing methylomes reveals distinct roles of cell type-specific hypomethylation in the regulation of cell identity genes.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 1, p. 75, doi. 10.1093/nar/gkv1332

By:

Hongbo Liu;
Xiaojuan Liu;
Shumei Zhang;
Jie Lv;
Song Li;
Shipeng Shang;
Shanshan Jia;
Yanjun Wei;
Fang Wang;
Jianzhong Su;
Qiong Wu;
Yan Zhang

Publication type:

Article

Exploded view of higher order G-quadruplex structures through click-chemistry assisted single-molecule mechanical unfolding.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 1, p. 45, doi. 10.1093/nar/gkv1326

By:

Selvam, Sangeetha;
Yu, Zhongbo;
Mao, Hanbin

Publication type:

Article

Bivalent interaction of the PZP domain of BRPF1 with the nucleosome impacts chromatin dynamics and acetylation.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 1, p. 472, doi. 10.1093/nar/gkv1321

By:

Klein, Brianna J.;
Muthurajan, Uma M.;
Lalonde, Marie-Eve;
Gibson, Matthew D.;
Andrews, Forest H.;
Hepler, Maggie;
Machida, Shinichi;
Yan, Kezhi;
Kurumizaka, Hitoshi;
Poirier, Michael G.;
Côté, Jacques;
Luger, Karolin;
Kutateladze, Tatiana G.

Publication type:

Article

Automated physics-based design of synthetic riboswitches from diverse RNA aptamers.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 1, p. 1, doi. 10.1093/nar/gkv1289

By:

Borujeni, Amin Espah;
Mishler, Dennis M.;
Wang, Jingzhi;
Huso, Walker;
Salis, Howard M.

Publication type:

Article

Folding dynamics and conformational heterogeneity of human telomeric G-quadruplex structures in Na+ solutions by single molecule FRET microscopy.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 1, p. 464, doi. 10.1093/nar/gkv1320

By:

Noer, Sofie L.;
Preus, Søren;
Gudnason, Daniel;
Aznauryan, Mikayel;
Mergny, Jean-Louis;
Birkedal, Victoria

Publication type:

Article

Tetramerization and interdomain flexibility of the replication initiation controller YabA enables simultaneous binding to multiple partners.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 1, p. 449, doi. 10.1093/nar/gkv1318

By:

Felicori, Liza;
Jameson, Katie H.;
Roblin, Pierre;
Fogg, Mark J.;
Garcia-Garcia, Transito;
Ventroux, Magali;
Cherrier, Mickaël V.;
Bazin, Alexandre;
Noirot, Philippe;
Wilkinson, Anthony J.;
Molina, Franck;
Terradot, Laurent;
Noirot-Gros, Marie-Françoise

Publication type:

Article

A general strategy to inhibiting viral −1 frameshifting based on upstream attenuation duplex formation.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 1, p. 256, doi. 10.1093/nar/gkv1307

By:

Hao-Teng Hu;
Che-Pei Cho;
Ya-Hui Lin;
Kung-Yao Chang

Publication type:

Article

Functional dichotomy in the 16S rRNA (m1A1408) methyltransferase family and control of catalytic activity via a novel tryptophan mediated loop reorganization.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 1, p. 342, doi. 10.1093/nar/gkv1306

By:

Witek, Marta A.;
Conn, Graeme L.

Publication type:

Article

The 3D folding of metazoan genomes correlates with the association of similar repetitive elements.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 1, p. 245, doi. 10.1093/nar/gkv1292

By:

Cournac, Axel;
Koszul, Romain;
Mozziconacci, Julien

Publication type:

Article

Signature motifs of GDP polyribonucleotidyltransferase, a non-segmented negative strand RNA viral mRNA capping enzyme, domain in the L protein are required for covalent enzyme–pRNA intermediate formation.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 1, p. 330, doi. 10.1093/nar/gkv1286

By:

Neubauer, Julie;
Ogino, Minako;
Green, Todd J.;
Ogino, Tomoaki

Publication type:

Article

Gbp2 interacts with THO/TREX through a novel type of RRM domain.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 1, p. 437, doi. 10.1093/nar/gkv1303

By:

Martínez-Lumbreras, Santiago;
Taverniti, Valerio;
Zorrilla, Silvia;
Séraphin, Bertrand;
Pérez-Cañadillas, José Manuel

Publication type:

Article

Mcm10 coordinates the timely assembly and activation of the replication fork helicase.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 1, p. 315, doi. 10.1093/nar/gkv1260

By:

Perez-Arnaiz, Patricia;
Bruck, Irina;
Kaplan, Daniel L.

Publication type:

Article

Bioinformatic tools for microRNA dissection.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 1, p. 24, doi. 10.1093/nar/gkv1221

By:

Akhtar, Most Mauluda;
Micolucci, Luigina;
Islam, Md Soriful;
Olivieri, Fabiola;
Procopio, Antonio Domenico

Publication type:

Article

Death of a dogma: eukaryotic mRNAs can code for more than one protein.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 1, p. 14, doi. 10.1093/nar/gkv1218

By:

Mouilleron, Hélène;
Delcourt, Vivian;
Roucou, Xavier

Publication type:

Article

Functional coordination and HuR-mediated regulation of mRNA stability during T cell activation.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 1, p. 426, doi. 10.1093/nar/gkv1066

By:

Blackinton, Jeff G.;
Keene, Jack D.

Publication type:

Article

Secondary structure encodes a cooperative tertiary folding funnel in the Azoarcus ribozyme.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 1, p. 402, doi. 10.1093/nar/gkv1055

By:

Mustoe, Anthony M.;
Al-Hashimi, Hashim M.;
Brooks III, Charles L.

Publication type:

Article

Human telomerase reverse transcriptase binds to a pre-organized hTR in vivo exposing its template.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 1, p. 413, doi. 10.1093/nar/gkv1065

By:

Zemora, Georgeta;
Handl, Stefan;
Waldsich, Christina

Publication type:

Article

Corrigendum.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 1, p. 508, doi. 10.1093/nar/gkv1083

By:

Fraley, Stephanie I.;
Hardick, Justin;
Masek, Billie J.;
Athamanolap, Pornpat;
Rothman, Richard E.;
Gaydos, Charlotte A.;
Carroll, Karen C.;
Wakefield, Teresa;
Wang, Tza-Huei;
Yang, Samuel

Publication type:

Article

Mechanism of Wnt signaling induced down regulation of mrhl long non-coding RNA in mouse spermatogonial cells.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 1, p. 387, doi. 10.1093/nar/gkv1023

By:

Akhade, Vijay Suresh;
Dighe, Shrinivas Nivrutti;
Kataruka, Shubhangini;
Satyanarayana Rao, Manchanahalli R.

Publication type:

Article

Acentric chromosome ends are prone to fusion with functional chromosome ends through a homology-directed rearrangement.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 1, p. 232, doi. 10.1093/nar/gkv997

By:

Yuko Ohno;
Yuki Ogiyama;
Yoshino Kubota;
Takuya Kubo;
Kojiro Ishii

Publication type:

Article

ATM and KAT5 safeguard replicating chromatin against formaldehyde damage.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 1, p. 198, doi. 10.1093/nar/gkv957

By:

Ortega-Atienza, Sara;
Wong, Victor C.;
DeLoughery, Zachary;
Luczak, Michal W.;
Zhitkovich, Anatoly

Publication type:

Article

DnaC traps DnaB as an open ring and remodels the domain that binds primase.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 1, p. 210, doi. 10.1093/nar/gkv961

By:

Chodavarapu, Sundari;
Jones, A. Daniel;
Feig, Michael;
Kaguni, Jon M.

Publication type:

Article

Characterization of a novel DNA glycosylase from S. sahachiroi involved in the reduction and repair of azinomycin B induced DNA damage.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 1, p. 187, doi. 10.1093/nar/gkv949

By:

Shan Wang;
Kai Liu;
Le Xiao;
LiYuan Yang;
Hong Li;
FeiXue Zhang;
Lei Lei;
ShengQing Li;
Xu Feng;
AiYing Li;
Jing He

Publication type:

Article

The p53-p21-DREAM-CDE/CHR pathway regulates G2/M cell cycle genes.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 1, p. 164, doi. 10.1093/nar/gkv927

By:

Fischer, Martin;
Quaas, Marianne;
Steiner, Lydia;
Engeland, Kurt

Publication type:

Article

Nuclear positioning rather than contraction controls ordered rearrangements of immunoglobulin loci.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 1, p. 175, doi. 10.1093/nar/gkv928

By:

Rother, Magdalena B.;
Palstra, Robert-Jan;
Jhunjhunwala, Suchit;
van Kester, Kevin A. M.;
van IJcken, Wilfred F. J.;
Hendriks, Rudi W.;
van Dongen, Jacques J. M.;
Murre, Cornelis;
van Zelm, Menno C.

Publication type:

Article

Guanine quadruplex structures localize to heterochromatin.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 1, p. 152, doi. 10.1093/nar/gkv900

By:

Hoffmann, Roland F.;
Moshkin, Yuri M.;
Mouton, Stijn;
Grzeschik, Nicola A.;
Kalicharan, Ruby D.;
Kuipers, Jeroen;
Wolters, Anouk H.G.;
Nishida, Kazuki;
Romashchenko, Aleksander V.;
Postberg, Jan;
Lipps, Hans;
Berezikov, Eugene;
Sibon, Ody C.M.;
Giepmans, Ben N.G.;
Lansdorp, Peter M.

Publication type:

Article

Characterization of a cAMP responsive transcription factor, Cmr (Rv1675c), in TB complex mycobacteria reveals overlap with the DosR (DevR) dormancy regulon.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 1, p. 134, doi. 10.1093/nar/gkv889

By:

Ranganathan, Sridevi;
Bai, Guangchun;
Lyubetskaya, Anna;
Knapp, Gwendowlyn S.;
Peterson, Matthew W.;
Gazdik, Michaela;
Gomes, Antonio L. C.;
Galagan, James E.;
McDonough, Kathleen A.

Publication type:

Article

Quantification of DNA cleavage specificity in Hi-C experiments.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 1, p. e4, doi. 10.1093/nar/gkv820

By:

Meluzzi, Dario;
Arya, Gaurav

Publication type:

Article

Turning publicly available gene expression data into discoveries using gene set context analysis.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 1, p. e8, doi. 10.1093/nar/gkv873

By:

Zhicheng Ji;
Vokes, Steven A.;
Dang, Chi V.;
Hongkai Ji

Publication type:

Article

Nano-mechanical measurements of protein-DNA interactions with a silicon nitride pulley.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 1, p. e7, doi. 10.1093/nar/gkv866

By:

Ju Shon, Min;
Cohen, Adam E.

Publication type:

Article

Large-scale profiling of microRNAs for The Cancer Genome Atlas.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 1, p. e3, doi. 10.1093/nar/gkv808

By:

Chu, Andy;
Robertson, Gordon;
Brooks, Denise;
Mungall, Andrew J.;
Birol, Inanc;
Coope, Robin;
Ma, Yussanne;
Jones, Steven;
Marra, Marco A.

Publication type:

Article

Identification of large-scale genomic variation in cancer genomes using in silico reference models.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 1, p. e5, doi. 10.1093/nar/gkv828

By:

Killcoyne, Sarah;
del Sol, Antonio

Publication type:

Article

Epigenetic factor EPC1 is a master regulator of DNA damage response by interacting with E2F1 to silence death and activate metastasis-related gene signatures.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 1, p. 117, doi. 10.1093/nar/gkv885

By:

Wang, Yajie;
Alla, Vijay;
Goody, Deborah;
Gupta, Shailendra K.;
Spitschak, Alf;
Wolkenhauer, Olaf;
Pützer, Brigitte M.;
Engelmann, David

Publication type:

Article

ROTS: reproducible RNA-seq biomarker detector––prognostic markers for clear cell renal cell cancer.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 1, p. e1, doi. 10.1093/nar/gkv806

By:

Seyednasrollah, Fatemeh;
Rantanen, Krista;
Jaakkola, Panu;
Elo, Laura L.

Publication type:

Article

DNA binding fluorescent proteins for the direct visualization of large DNA molecules.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 1, p. e6, doi. 10.1093/nar/gkv834

By:

Seonghyun Lee;
Yeeun Oh;
Jungyoon Lee;
Sojeong Choe;
Sangyong Lim;
Hyun Soo Lee;
Kyubong Jo;
David C. Schwartz

Publication type:

Article

DynaMIT: the dynamic motif integration toolkit.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 1, p. e2, doi. 10.1093/nar/gkv807

By:

Dassi, Erik;
Quattrone, Alessandro

Publication type:

Article

MitoAge: a database for comparative analysis of mitochondrial DNA, with a special focus on animal longevity.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 1, p. D1262, doi. 10.1093/nar/gkv1187

By:

Toren, Dmitri;
Barzilay, Thomer;
Tacutu, Robi;
Lehmann, Gilad;
Muradian, Khachik K.;
Fraifeld, Vadim E.

Publication type:

Article

MitoMiner v3.1, an update on the mitochondrial proteomics database.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 1, p. D1258, doi. 10.1093/nar/gkv1001

By:

Smith, Anthony C.;
Robinson, Alan J.

Publication type:

Article

MitoCarta2.0: an updated inventory of mammalian mitochondrial proteins.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 1, p. D1251, doi. 10.1093/nar/gkv1003

By:

Calvo, Sarah E.;
Clauser, Karl R.;
Mootha, Vamsi K.

Publication type:

Article