Works matching IS 03051048 AND DT 2016 AND VI 44 AND IP 4

Results: 49

Control of alternative end joining by the chromatin remodeler p400 ATPase.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 4, p. 1657, doi. 10.1093/nar/gkv1202

By:

Taty-Taty, Gemael-Cedrick;
Chailleux, Catherine;
Quaranta, Muriel;
So, Ayeong;
Guirouilh-Barbat, Josée;
Lopez, Bernard S.;
Bertrand, Pascale;
Trouche, Didier;
Canitrot, Yvan

Publication type:

Article

Transcription-coupled DNA supercoiling dictates the chromosomal arrangement of bacterial genes.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 4, p. 1514, doi. 10.1093/nar/gkw007

By:

Sobetzko, Patrick

Publication type:

Article

Structure of the hypusinylated eukaryotic translation factor eIF-5A bound to the ribosome.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 4, p. 1944, doi. 10.1093/nar/gkv1517

By:

Schmidt, Christian;
Becker, Thomas;
Heuer, Andrè;
Braunger, Katharina;
Shanmuganathan, Vivekanandan;
Pech, Markus;
Berninghausen, Otto;
Wilson, Daniel N.;
Beckmann, Roland

Publication type:

Article

A predictive modeling approach for cell line-specific long-range regulatory interactions.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 4, p. 1977, doi. 10.1093/nar/gkv1181

By:

Roy, Sushmita;
Siahpirani, Alireza Fotuhi;
Chasman, Deborah;
Knaack, Sara;
Ay, Ferhat;
Stewart, Ron;
Wilson, Michael;
Sridharan, Rupa

Publication type:

Article

PARP-2 domain requirements for DNA damage-dependent activation and localization to sites of DNA damage.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 4, p. 1691, doi. 10.1093/nar/gkv1376

By:

Riccio, Amanda A.;
Cingolani, Gino;
Pascal, John M.

Publication type:

Article

Intragenic G-quadruplex structure formed in the human CD133 and its biological and translational relevance.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 4, p. 1579, doi. 10.1093/nar/gkv1122

By:

Zizza, Pasquale;
Cingolani, Chiara;
Artuso, Simona;
Salvati, Erica;
Rizzo, Angela;
D'Angelo, Carmen;
Porru, Manuela;
Pagano, Bruno;
Amato, Jussara;
Randazzo, Antonio;
Novellino, Ettore;
Stoppacciaro, Antonella;
Gilson, Eric;
Stassi, Giorgio;
Leonetti, Carlo;
Biroccio, Annamaria

Publication type:

Article

BubbleTree: an intuitive visualization to elucidate tumoral aneuploidy and clonality using next generation sequencing data.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 4, p. 1, doi. 10.1093/nar/gkv1102

By:

Wei Zhu;
Kuziora, Michael;
Creasy, Todd;
Zhongwu Lai;
Morehouse, Christopher;
Xiang Guo;
Sebastian, Yinong;
Dong Shen;
Jiaqi Huang;
Dry, Jonathan R.;
Feng Xue;
Liyan Jiang;
Yihong Yao;
Higgs, Brandon W.

Publication type:

Article

Unfolding the HIV-1 reverse transcriptase RNase H domain - how to lose a molecular tug-of-war.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 4, p. 1776, doi. 10.1093/nar/gkv1538

By:

Xunhai Zheng;
Pedersen, Lars C.;
Gabel, Scott A.;
Mueller, Geoffrey A.;
DeRose, Eugene F.;
London, Robert E.

Publication type:

Article

A deep learning framework for modeling structural features of RNA-binding protein targets.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 4, p. 1, doi. 10.1093/nar/gkv1025

By:

Sai Zhang;
Jingtian Zhou;
Hailin Hu;
Haipeng Gong;
Ligong Chen;
Chao Cheng;
Jianyang Zeng

Publication type:

Article

Multiple nucleic acid cleavage modes in divergent type III CRISPR systems.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 4, p. 1789, doi. 10.1093/nar/gkw020

By:

Jing Zhang;
Graham, Shirley;
Tello, Agnes;
Huanting Liu;
White, Malcolm F.

Publication type:

Article

LymAnalyzer: a tool for comprehensive analysis of next generation sequencing data of T cell receptors and immunoglobulins.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 4, p. 1, doi. 10.1093/nar/gkv1016

By:

Yaxuan Yu;
Ceredig, Rhodri;
Seoighe, Cathal

Publication type:

Article

Synthesis and cell-free cloning of DNA libraries using programmable microfluidics.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 4, p. 1, doi. 10.1093/nar/gkv1087

By:

Yehezkel, Tuval Ben;
Rival, Arnaud;
Raz, Ofir;
Cohen, Rafael;
Marx, Zipora;
Camara, Miguel;
Dubern, Jean-Frédéric;
Koch, Birgit;
Heeb, Stephan;
Krasnogor, Natalio;
Delattre, Cyril;
Shapiro, Ehud

Publication type:

Article

Genome-wide analysis of the specificity and mechanisms of replication infidelity driven by imbalanced dNTP pools.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 4, p. 1669, doi. 10.1093/nar/gkv1298

By:

Watt, Danielle L.;
Buckland, Robert J.;
Lujan, Scott A.;
Kunkel, Thomas A.;
Chabes, Andrei

Publication type:

Article

New players in heterochromatin silencing: histone variant H3.3 and the ATRX/DAXX chaperone.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 4, p. 1496, doi. 10.1093/nar/gkw012

By:

Voon, Hsiao P. J.;
Lee H. Wong

Publication type:

Article

Sliding of a 43S ribosomal complex from the recognized AUG codon triggered by a delay in eIF2-bound GTP hydrolysis.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 4, p. 1882, doi. 10.1093/nar/gkv1514

By:

Terenin, Ilya M.;
Akulich, Kseniya A.;
Andreev, Dmitry E.;
Polyanskaya, Sofya A.;
Shatsky, Ivan N.;
Dmitriev, Sergey E.

Publication type:

Article

A novel conceptual approach to read-filtering in high-throughput amplicon sequencing studies.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 4, p. 1, doi. 10.1093/nar/gkv1113

By:

Puente-Sònchez, Fernando;
Aguirre, Jacobo;
Parro, Véctor

Publication type:

Article

The Kub5-Hera/RPRD1B interactome: a novel role in preserving genetic stability by regulating DNA mismatch repair.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 4, p. 1718, doi. 10.1093/nar/gkv1492

By:

Patidar, Praveen L.;
Motea, Edward A.;
Fattah, Farjana J.;
Yunyun Zhou;
Morales, Julio C.;
Yang Xie;
Garner, Harold R.;
Boothman, David A.

Publication type:

Article

Theoretical estimates of exposure timescales of protein binding sites on DNA regulated by nucleosome kinetics.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 4, p. 1630, doi. 10.1093/nar/gkv1153

By:

Parmar, Jyotsana J.;
Das, Dibyendu;
Padinhateeri, Ranjith

Publication type:

Article

Evolution of disorder in Mediator complex and its functional relevance.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 4, p. 1591, doi. 10.1093/nar/gkv1135

By:

Nagulapalli, Malini;
Maji, Sourobh;
Dwivedi, Nidhi;
Dahiya, Pradeep;
Thakur, Jitendra K.

Publication type:

Article

Circularization pathway of a bacterial group II intron.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 4, p. 1845, doi. 10.1093/nar/gkv1381

By:

Monat, Caroline;
Cousineau, Benoit

Publication type:

Article

Mechanism and regulation of the nonsense-mediated decay pathway.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 4, p. 1483, doi. 10.1093/nar/gkw010

By:

Hug, Nele;
Longman, Dasa;
Còceres, Javier F.

Publication type:

Article

The K<sup>+</sup>-dependent GTPase Nug1 is implicated in the association of the helicase Dbp10 to the immature peptidyl transferase centre during ribosome maturation.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 4, p. 1800, doi. 10.1093/nar/gkw045

By:

Manikas, Rizos-Georgios;
Thomson, Emma;
Thoms, Matthias;
Hurt, Ed

Publication type:

Article

Human nonsense-mediated mRNA decay factor UPF2 interacts directly with eRF3 and the SURF complex.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 4, p. 1909, doi. 10.1093/nar/gkv1527

By:

López-Perrote, Andrés;
ño, Raquel Casta;
Melero, Roberto;
Zamarro, Teresa;
Hitomi Kurosawa;
Tetsuo Ohnishi;
Akiko Uchiyama;
Kyoko Aoyagi;
Buchwald, Gretel;
Naoyuki Kataoka;
Akio Yamashita;
Llorca, Oscar

Publication type:

Article

Harnessing Type I and Type III CRISPR-Cas systems for genome editing.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 4, p. 1, doi. 10.1093/nar/gkv1044

By:

Yingjun Li;
Saifu Pan;
Yan Zhang;
Min Ren;
Mingxia Feng;
Nan Peng;
Lanming Chen;
Yun Xiang Liang;
Qunxin She

Publication type:

Article

DNA deletion as a mechanism for developmentally programmed centromere loss.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 4, p. 1553, doi. 10.1093/nar/gkv1110

By:

Lhuillier-Akakpo, Maoussi;
Guérin, Frédéric;
Frapporti, Andrea;
Duharcourt, Sandra

Publication type:

Article

Identification of LACTB2, a metallo-β-lactamase protein, as a human mitochondrial endoribonuclease.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 4, p. 1813, doi. 10.1093/nar/gkw050

By:

Levy, Shiri;
Allerston, Charles K.;
Liveanu, Varda;
Habib, Mouna R.;
Gileadi, Opher;
Schuster, Gadi

Publication type:

Article

Effects of tRNA modification on translational accuracy depend on intrinsic codon-anticodon strength.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 4, p. 1871, doi. 10.1093/nar/gkv1506

By:

Manickam, Nandini;
Joshi, Kartikeya;
Bhatt, Monika J.;
Farabaugh, Philip J.

Publication type:

Article

Binding of 14-3-3 reader proteins to phosphorylated DNMT1 facilitates aberrant DNA methylation and gene expression.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 4, p. 1642, doi. 10.1093/nar/gkv1162

By:

Est&áve, Pierre-Olivier;
Guoqiang Zhang;
Ponnaluri, V. K. Chaithanya;
Deepti, Kanneganti;
Hang Gyeong Chin;
Dai, Nan;
Sagum, Cari;
Black, Karynne;
Corrêa, Jr, Ivan R.;
Bedford, Mark T.;
Xiaodong Cheng;
Pradhan, Sriharsa

Publication type:

Article

Identification of a conserved 5'-dRP lyase activity in bacterial DNA repair ligase D and its potential role in base excision repair.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 4, p. 1833, doi. 10.1093/nar/gkw054

By:

de Ory, Ana;
Nagler, Katja;
Carrasco, BegoÑa;
Raguse, Marina;
Zafra, Olga;
Moeller, Ralf;
de Vega, Miguel

Publication type:

Article

The conserved GTPase HflX is a ribosome splitting factor that binds to the E-site of the bacterial ribosome.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 4, p. 1952, doi. 10.1093/nar/gkv1524

By:

Coatham, Mackenzie L.;
Brandon, Harland E.;
Fischer, Jeffrey J.;
Tobias Schümmer;
Wieden, Hans-Joachim

Publication type:

Article

A higher-order entity formed by the flexible assembly of RAP1 with TRF2.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 4, p. 1962, doi. 10.1093/nar/gkv1531

By:

Gaullier, Guillaume;
Miron, Simona;
Pisano, Sabrina;
Buisson, Rámi;
Le Bihan, Yann-Vaï;
Tellier-Lebègue, Carine;
Messaoud, Wala;
Roblin, Pierre;
Guimarães, Beatriz G.;
Thai, Robert;
Giraud-Panis2, Marie-Josèphe;
Gilson, Eric;
ène Le Du, Marie-Hé

Publication type:

Article

Transient overexpression of DNA adenine methylase enables efficient and mobile genome engineering with reduced off-target effects.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 4, p. 1, doi. 10.1093/nar/gkv1090

By:

Lennen, Rebecca M.;
Wallin, Annika I. Nilsson;
Pedersen, Margit;
Bonde, Mads;
Hao Luo;
Herrgård, Markus J.;
Sommer, Morten O. A.

Publication type:

Article

Phosphorylation of Ku dictates DNA double-strand break (DSB) repair pathway choice in S phase.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 4, p. 1732, doi. 10.1093/nar/gkv1499

By:

Kyung-Jong Lee;
Saha, Janapriya;
Jingxin Sun;
Fattah, Kazi R.;
Shu-Chi Wang;
Jakob, Burkhard;
Linfeng Chi;
Shih-Ya Wang;
Taucher-Scholz, Gisela;
Davis, Anthony J.;
Chen, David J.

Publication type:

Article

The Effects of Sequence Variation on Genome-wide NRF2 Binding--New Target Genes and Regulatory SNPs.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 4, p. 1760, doi. 10.1093/nar/gkw052

By:

Kuosmanen, Suvi M.;
Viitala, Sari;
Laitinen, Tuomo;
Peräkylä, Mikael;
önen, Petri Pöl;
Kansanen, Emilia;
Leinonen, Hanna;
Raju, Suresh;
Wienecke-Baldacchino, Anke;
Närvänen, Ale;
Poso, Antti;
Heinäniemi, Merja;
Heikkinen, Sami;
Levonen, Anna-Liisa

Publication type:

Article

A gene network engineering platform for lactic acid bacteria.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 4, p. 1, doi. 10.1093/nar/gkv1093

By:

Wentao Kong;
Kapuganti, Venkata S.;
Ting Lu

Publication type:

Article

The first crystal structures of RNA-PNA duplexes and a PNA-PNA duplex containing mismatches--toward anti-sense therapy against TREDs.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 4, p. 1937, doi. 10.1093/nar/gkv1513

By:

Kiliszek, Agnieszka;
Banaszak, Katarzyna;
Dauter, Zbigniew;
Rypniewski, Wojciech

Publication type:

Article

Automated design of hammerhead ribozymes and validation by targeting the PABPN1 gene transcript.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 4, p. 1, doi. 10.1093/nar/gkv1111

By:

Kharma, Nawwaf;
Varin, Luc;
Abu-Baker, Aida;
Ouellet, Jonathan;
Najeh, Sabrine;
Ehdaeivand, Mohammad-Reza;
Belmonte, Gabriel;
Ambri, Anas;
Rouleau, Guy;
Perreault, Jonathan

Publication type:

Article

Multisite-specific archaeosine tRNA-guanine transglycosylase (ArcTGT) from Thermoplasma acidophilum, a thermo-acidophilic archaeon.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 4, p. 1894, doi. 10.1093/nar/gkv1522

By:

Takuya Kawamura;
Akira Hirata;
Satoshi Ohno;
Yuichiro Nomura;
Tomoko Nagano;
Nobukazu Nameki;
Takashi Yokogawa;
Hiroyuki Hori

Publication type:

Article

Exchange between Escherichia coli polymerases II and III on a processivity clamp.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 4, p. 1681, doi. 10.1093/nar/gkv1375

By:

Kath, James E.;
Seungwoo Chang;
Scotland, Michelle K.;
Wilbertz, Johannes H.;
Jergic, Slobodan;
Dixon, Nicholas E.;
Sutton, Mark D.;
Loparo, Joseph J.

Publication type:

Article

High-resolution analysis of the human retina miRNome reveals isomiR variations and novel microRNAs.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 4, p. 1525, doi. 10.1093/nar/gkw039

By:

Karali, Marianthi;
Persico, Maria;
Mutarelli, Margherita;
Carissimo, Annamaria;
Pizzo, Mariateresa;
Marwah, Veer Singh;
Ambrosio, Concetta;
Pinelli, Michele;
Carrella, Diego;
Ferrari, Stefano;
Ponzin, Diego;
Nigro, Vincenzo;
di Bernardo, Diego;
Banfi, Sandro

Publication type:

Article

Nuclear factor 90 uses an ADAR2-like binding mode to recognize specific bases in dsRNA.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 4, p. 1924, doi. 10.1093/nar/gkv1508

By:

Jayachandran, Uma;
Grey, Heather;
Cook, Atlanta G.

Publication type:

Article

Genome-wide binding studies reveal DNA binding specificity mechanisms and functional interplay amongst Forkhead transcription factors.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 4, p. 1566, doi. 10.1093/nar/gkv1120

By:

Xi Chen;
Zongling Ji;
Webber, Aaron;
Sharrocks, Andrew D.

Publication type:

Article

HSP70 binding protein 1 (HspBP1) suppresses HIV-1 replication by inhibiting NF-κB mediated ctivation of viral gene expression.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 4, p. 1613, doi. 10.1093/nar/gkv1151

By:

Chaudhary, Priyanka;
Khan, Sohrab Zafar;
Rawat, Pratima;
Augustine, Tracy;
Raynes, Deborah A.;
Guerriero, Vince;
Mitra, Debashis

Publication type:

Article

Whole transcriptome profiling reveals the RNA content of motor axons.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 4, p. 1, doi. 10.1093/nar/gkv1027

By:

Briese, Michael;
Saal, Lena;
Appenzeller, Silke;
Moradi, Mehri;
Baluapuri, Apoorva;
Sendtner, Michael

Publication type:

Article

Re-evaluation of G-quadruplex propensity with G4Hunter.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 4, p. 1746, doi. 10.1093/nar/gkw006

By:

Bedrat, Amina;
Lacroix, Laurent;
Mergny, Jean-Louis

Publication type:

Article

DNA-DNA kissing complexes as a new tool for the assembly of DNA nanostructures.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 4, p. 1502, doi. 10.1093/nar/gkw014

By:

Barth, Anna;
Kobbe, Daniela;
Focke, Manfred

Publication type:

Article

The spliceosome-associated protein Nrl1 suppresses homologous recombination-dependent R-loop formation in fission yeast.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 4, p. 1703, doi. 10.1093/nar/gkv1473

By:

Aronica, Lucia;
Kasparek, Torben;
Ruchman, David;
Marquez, Yamile;
Cipak, Lubos;
Cipakova, Ingrid;
Anrather, Dorothea;
Mikolaskova, Barbora;
Radtke, Maximilian;
Sarkar, Sovan;
Chen-Chun Pai;
Blaikley, Elizabeth;
Walker, Carol;
Kuo-Fang Shen;
Schroeder, Renee;
Barta, Andrea;
Forsburg, Susan L.;
Humphrey, Timothy C.

Publication type:

Article

A genome landscape of SRSF3-regulated splicing events and gene expression in human osteosarcoma U2OS cells.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 4, p. 1854, doi. 10.1093/nar/gkv1500

By:

Ajiro, Masahiko;
Jia, Rong;
Yanqin Yang;
Jun Zhu;
Zhi-Ming Zheng

Publication type:

Article

Autoregulation of topoisomerase I expression by supercoiling sensitive transcription.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 4, p. 1541, doi. 10.1093/nar/gkv1088

By:

Ahmed, Wareed;
Nagaraja, Valakunja;
Karthik, Pullela V. D. N. B.;
Menon, Shruti

Publication type:

Article