Works matching IS 03051048 AND DT 2014 AND VI 42 AND IP 16

Results: 64

Mechanism by which a LINE protein recognizes its 3′ tail RNA.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 16, p. 10605, doi. 10.1093/nar/gku753

By:

Hayashi, Yoshinori;
Kajikawa, Masaki;
Matsumoto, Takuma;
Okada, Norihiro

Publication type:

Article

Structural basis of lariat RNA recognition by the intron debranching enzyme Dbr1.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 16, p. 10845, doi. 10.1093/nar/gku725

By:

Montemayor, Eric J.;
Katolik, Adam;
Clark, Nathaniel E.;
Taylor, Alexander B.;
Schuermann, Jonathan P.;
Combs, D. Joshua;
Johnsson, Richard;
Holloway, Stephen P.;
Stevens, Scott W.;
Damha, Masad J.;
Hart, P. John

Publication type:

Article

Zinc finger oxidation of Fpg/Nei DNA glycosylases by 2-thioxanthine: biochemical and X-ray structural characterization.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 16, p. 10748, doi. 10.1093/nar/gku613

By:

Biela, Artur;
Coste, Franck;
Culard, Françoise;
Guerin, Martine;
Goffinont, Stéphane;
Gasteiger, Karola;
Cieśla, Jarosław;
Winczura, Alicja;
Kazimierczuk, Zygmunt;
Gasparutto, Didier;
Carell, Thomas;
Tudek, Barbara;
Castaing, Bertrand

Publication type:

Article

Molecular mechanisms of master regulator VqsM mediating quorum-sensing and antibiotic resistance in Pseudomonas aeruginosa.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 16, p. 10307, doi. 10.1093/nar/gku586

By:

Liang, Haihua;
Deng, Xin;
Li, Xuefeng;
Ye, Yan;
Wu, Min

Publication type:

Article

Mycobacterium RbpA cooperates with the stress-response σB subunit of RNA polymerase in promoter DNA unwinding.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 16, p. 10399, doi. 10.1093/nar/gku742

By:

Hu, Yangbo;
Morichaud, Zakia;
Sudalaiyadum Perumal, Ayyappasamy;
Roquet-Baneres, Françoise;
Brodolin, Konstantin

Publication type:

Article

Integrity of SRP RNA is ensured by La and the nuclear RNA quality control machinery.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 16, p. 10698, doi. 10.1093/nar/gku761

By:

Leung, Eileen;
Schneider, Claudia;
Yan, Fu;
Mohi-El-Din, Hatem;
Kudla, Grzegorz;
Tuck, Alex;
Wlotzka, Wiebke;
Doronina, Victoria A.;
Bartley, Ralph;
Watkins, Nicholas J.;
Tollervey, David;
Brown, Jeremy D.

Publication type:

Article

A high security double lock and key mechanism in HUH relaxases controls oriT-processing for plasmid conjugation.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 16, p. 10632, doi. 10.1093/nar/gku741

By:

Carballeira, José Daniel;
González-Pérez, Blanca;
Moncalián, Gabriel;
la Cruz, Fernando de

Publication type:

Article

The CHR site: definition and genome-wide identification of a cell cycle transcriptional element.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 16, p. 10331, doi. 10.1093/nar/gku696

By:

Müller, Gerd A.;
Wintsche, Axel;
Stangner, Konstanze;
Prohaska, Sonja J.;
Stadler, Peter F.;
Engeland, Kurt

Publication type:

Article

Rolling circle replication requires single-stranded DNA binding protein to avoid termination and production of double-stranded DNA.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 16, p. 10596, doi. 10.1093/nar/gku737

By:

Ducani, Cosimo;
Bernardinelli, Giulio;
Högberg, Björn

Publication type:

Article

A competitive formation of DNA:RNA hybrid G-quadruplex is responsible to the mitochondrial transcription termination at the DNA replication priming site.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 16, p. 10832, doi. 10.1093/nar/gku764

By:

Zheng, Ke-wei;
Wu, Ren-yi;
He, Yi-de;
Xiao, Shan;
Zhang, Jia-yu;
Liu, Jia-quan;
Hao, Yu-hua;
Tan, Zheng

Publication type:

Article

Direct elicitation of template concentration from quantification cycle (Cq) distributions in digital PCR.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 16, p. e126, doi. 10.1093/nar/gku603

By:

Mojtahedi, Mitra;
Fouquier d'Hérouël, Aymeric;
Huang, Sui

Publication type:

Article

The 9-1-1 checkpoint clamp stimulates DNA resection by Dna2-Sgs1 and Exo1.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 16, p. 10516, doi. 10.1093/nar/gku746

By:

Ngo, Greg H.P.;
Balakrishnan, Lata;
Dubarry, Marion;
Campbell, Judith L.;
Lydall, David

Publication type:

Article

40S recruitment in the absence of eIF4G/4A by EMCV IRES refines the model for translation initiation on the archetype of Type II IRESs.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 16, p. 10373, doi. 10.1093/nar/gku720

By:

Chamond, Nathalie;
Deforges, Jules;
Ulryck, Nathalie;
Sargueil, Bruno

Publication type:

Article

Processing of double-R-loops in (CAG)·(CTG) and C9orf72 (GGGGCC)·(GGCCCC) repeats causes instability.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 16, p. 10473, doi. 10.1093/nar/gku658

By:

Reddy, Kaalak;
Schmidt, Monika H.M.;
Geist, Jaimie M.;
Thakkar, Neha P.;
Panigrahi, Gagan B.;
Wang, Yuh-Hwa;
Pearson, Christopher E.

Publication type:

Article

A combination of computational and experimental approaches identifies DNA sequence constraints associated with target site binding specificity of the transcription factor CSL.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 16, p. 10550, doi. 10.1093/nar/gku730

By:

Torella, Rubben;
Li, Jinghua;
Kinrade, Eddie;
Cerda-Moya, Gustavo;
Contreras, Ashley N.;
Foy, Robert;
Stojnic, Robert;
Glen, Robert C.;
Kovall, Rhett A.;
Adryan, Boris;
Bray, Sarah J.

Publication type:

Article

Systematic exploration of a class of hydrophobic unnatural base pairs yields multiple new candidates for the expansion of the genetic alphabet.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 16, p. 10235, doi. 10.1093/nar/gku715

By:

Dhami, Kirandeep;
Malyshev, Denis A.;
Ordoukhanian, Phillip;
Kubelka, Tomáš;
Hocek, Michal;
Romesberg, Floyd E.

Publication type:

Article

A comprehensive survey of non-canonical splice sites in the human transcriptome.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 16, p. 10564, doi. 10.1093/nar/gku744

By:

Parada, Guillermo E.;
Munita, Roberto;
Cerda, Cledi A.;
Gysling, Katia

Publication type:

Article

Erratum.

Published in:: Nucleic Acids Research, 2014, v. 42, n. 16, p. 10871, doi. 10.1093/nar/gku668
Publication type:: Article

Multivariate inference of pathway activity in host immunity and response to therapeutics.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 16, p. 10288, doi. 10.1093/nar/gku722

By:

Goel, Gautam;
Conway, Kara L.;
Jaeger, Martin;
Netea, Mihai G.;
Xavier, Ramnik J.

Publication type:

Article

Analysis of an artificial zinc finger epigenetic modulator: widespread binding but limited regulation.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 16, p. 10856, doi. 10.1093/nar/gku708

By:

Grimmer, Matthew R.;
Stolzenburg, Sabine;
Ford, Ethan;
Lister, Ryan;
Blancafort, Pilar;
Farnham, Peggy J.

Publication type:

Article

Molecular insights into replication initiation by Qβ replicase using ribosomal protein S1.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 16, p. 10809, doi. 10.1093/nar/gku745

By:

Takeshita, Daijiro;
Yamashita, Seisuke;
Tomita, Kozo

Publication type:

Article

Subscriptions.

Published in:: Nucleic Acids Research, 2014, v. 42, n. 16, p. iii, doi. 10.1093/nar/gku053
Publication type:: Article

The interplay of restriction-modification systems with mobile genetic elements and their prokaryotic hosts.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 16, p. 10618, doi. 10.1093/nar/gku734

By:

Oliveira, Pedro H.;
Touchon, Marie;
Rocha, Eduardo P.C.

Publication type:

Article

Binding of the transcription factor Atf1 to promoters serves as a barrier to phase nucleosome arrays and avoid cryptic transcription.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 16, p. 10351

By:

García, Patricia;
Paulo, Esther;
Gao, Jun;
Wahls, Wayne P.;
Ayté, José;
Lowy, Ernesto;
Hidalgo, Elena

Publication type:

Article

Structure analysis of free and bound states of an RNA aptamer against ribosomal protein S8 from Bacillus anthracis.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 16, p. 10795, doi. 10.1093/nar/gku743

By:

Davlieva, Milya;
Donarski, James;
Wang, Jiachen;
Shamoo, Yousif;
Nikonowicz, Edward P.

Publication type:

Article

Nucleic Acids Research: Editorial Board.

Published in:: Nucleic Acids Research, 2014, v. 42, n. 16, p. ii, doi. 10.1093/nar/gku030
Publication type:: Article

A view through a chromatin loop: insights into the ecdysone activation of early genes in Drosophila.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 16, p. 10409, doi. 10.1093/nar/gku754

By:

Bernardo, Travis J.;
Dubrovskaya, Veronica A.;
Xie, Xie;
Dubrovsky, Edward B.

Publication type:

Article

Synthesis, properties, and biological activity of boranophosphate analogs of the mRNA cap: versatile tools for manipulation of therapeutically relevant cap-dependent processes.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 16, p. 10245, doi. 10.1093/nar/gku757

By:

Kowalska, Joanna;
Wypijewska del Nogal, Anna;
Darzynkiewicz, Zbigniew M.;
Buck, Janina;
Nicola, Corina;
Kuhn, Andreas N.;
Lukaszewicz, Maciej;
Zuberek, Joanna;
Strenkowska, Malwina;
Ziemniak, Marcin;
Maciejczyk, Maciej;
Bojarska, Elzbieta;
Rhoads, Robert E.;
Darzynkiewicz, Edward;
Sahin, Ugur;
Jemielity, Jacek

Publication type:

Article

Multiple LacI-mediated loops revealed by Bayesian statistics and tethered particle motion.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 16, p. 10265, doi. 10.1093/nar/gku563

By:

Johnson, Stephanie;
van de Meent, Jan-Willem;
Phillips, Rob;
Wiggins, Chris H.;
Lindén, Martin

Publication type:

Article

Retinoid acid-related orphan receptor γ, RORγ, participates in diurnal transcriptional regulation of lipid metabolic genes.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 16, p. 10448, doi. 10.1093/nar/gku766

By:

Takeda, Yukimasa;
Kang, Hong Soon;
Lih, Fred B.;
Jiang, Hongfeng;
Blaner, William S.;
Jetten, Anton M.

Publication type:

Article

Essential role of eIF5-mimic protein in animal development is linked to control of ATF4 expression.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 16, p. 10321, doi. 10.1093/nar/gku670

By:

Hiraishi, Hiroyuki;
Oatman, Jamie;
Haller, Sherry L.;
Blunk, Logan;
McGivern, Benton;
Morris, Jacob;
Papadopoulos, Evangelos;
Gutierrez, Wade;
Gordon, Michelle;
Bokhari, Wahaj;
Ikeda, Yuka;
Miles, David;
Fellers, John;
Asano, Masayo;
Wagner, Gerhard;
Tazi, Loubna;
Rothenburg, Stefan;
Brown, Susan J.;
Asano, Katsura

Publication type:

Article

Negative regulation of the interferon response by an interferon-induced long non-coding RNA.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 16, p. 10668, doi. 10.1093/nar/gku713

By:

Kambara, Hiroto;
Niazi, Farshad;
Kostadinova, Lenche;
Moonka, Dilip K.;
Siegel, Christopher T.;
Post, Anthony B.;
Carnero, Elena;
Barriocanal, Marina;
Fortes, Puri;
Anthony, Donald D.;
Valadkhan, Saba

Publication type:

Article

Syntheses and characterizations of the in vivo replicative bypass and mutagenic properties of the minor-groove O2-alkylthymidine lesions.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 16, p. 10529, doi. 10.1093/nar/gku748

By:

Zhai, Qianqian;
Wang, Pengcheng;
Cai, Qian;
Wang, Yinsheng

Publication type:

Article

Nucleic Acids Research.

Published in:: Nucleic Acids Research, 2014, v. 42, n. 16, p. i, doi. 10.1093/nar/gku007
Publication type:: Article

MRTF-A steers an epigenetic complex to activate endothelin-induced pro-inflammatory transcription in vascular smooth muscle cells.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 16, p. 10460, doi. 10.1093/nar/gku776

By:

Yang, Yuyu;
Cheng, Xian;
Tian, Wenfang;
Zhou, Bisheng;
Wu, Xiaoyan;
Xu, Huihui;
Fang, Fei;
Fang, Mingming;
Xu, Yong

Publication type:

Article

Molecular mechanisms of retroviral integration site selection.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 16, p. 10209, doi. 10.1093/nar/gku769

By:

Kvaratskhelia, Mamuka;
Sharma, Amit;
Larue, Ross C.;
Serrao, Erik;
Engelman, Alan

Publication type:

Article

Crystal structure of the catalytic core of Rad2: insights into the mechanism of substrate binding.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 16, p. 10762

By:

Miętus, Michał;
Nowak, Elżbieta;
Jaciuk, Marcin;
Kustosz, Paweł;
Studnicka, Justyna;
Nowotny, Marcin

Publication type:

Article

Impact of next-generation sequencing error on analysis of barcoded plasmid libraries of known complexity and sequence.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 16, p. e129, doi. 10.1093/nar/gku607

By:

Deakin, Claire T.;
Deakin, Jeffrey J.;
Ginn, Samantha L.;
Young, Paul;
Humphreys, David;
Suter, Catherine M.;
Alexander, Ian E.;
Hallwirth, Claus V.

Publication type:

Article

Why double-stranded RNA resists condensation.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 16, p. 10823, doi. 10.1093/nar/gku756

By:

Tolokh, Igor S.;
Pabit, Suzette A.;
Katz, Andrea M.;
Chen, Yujie;
Drozdetski, Aleksander;
Baker, Nathan;
Pollack, Lois;
Onufriev, Alexey V.

Publication type:

Article

Probing the elastic limit of DNA bending.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 16, p. 10786, doi. 10.1093/nar/gku735

By:

Le, Tung T.;
Kim, Harold D.

Publication type:

Article

Effects of supercoiling on enhancer–promoter contacts.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 16, p. 10425, doi. 10.1093/nar/gku759

By:

Benedetti, Fabrizio;
Dorier, Julien;
Stasiak, Andrzej

Publication type:

Article

Degradation of DNA damage-independently stalled RNA polymerase II is independent of the E3 ligase Elc1.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 16, p. 10503, doi. 10.1093/nar/gku731

By:

Karakasili, Eleni;
Burkert-Kautzsch, Cornelia;
Kieser, Anja;
Sträßer, Katja

Publication type:

Article

An intensity ratio of interlocking loops determines circadian period length.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 16, p. 10278, doi. 10.1093/nar/gku701

By:

Yan, Jie;
Shi, Guangsen;
Zhang, Zhihui;
Wu, Xi;
Liu, Zhiwei;
Xing, Lijuan;
Qu, Zhipeng;
Dong, Zhen;
Yang, Ling;
Xu, Ying

Publication type:

Article

MYC and EGR1 synergize to trigger tumor cell death by controlling NOXA and BIM transcription upon treatment with the proteasome inhibitor bortezomib.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 16, p. 10433, doi. 10.1093/nar/gku763

By:

Wirth, Matthias;
Stojanovic, Natasa;
Christian, Jan;
Paul, Mariel C.;
Stauber, Roland H.;
Schmid, Roland M.;
Häcker, Georg;
Krämer, Oliver H.;
Saur, Dieter;
Schneider, Günter

Publication type:

Article

The interplay of primer-template DNA phosphorylation status and single-stranded DNA binding proteins in directing clamp loaders to the appropriate polarity of DNA.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 16, p. 10655, doi. 10.1093/nar/gku774

By:

Hayner, Jaclyn N.;
Douma, Lauren G.;
Bloom, Linda B.

Publication type:

Article

MosaicSolver: a tool for determining recombinants of viral genomes from pileup data.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 16, p. e123, doi. 10.1093/nar/gku524

By:

Wood, Graham R.;
Ryabov, Eugene V.;
Fannon, Jessica M.;
Moore, Jonathan D.;
Evans, David J.;
Burroughs, Nigel

Publication type:

Article

Dual roles of c-Myc in the regulation of hTERT gene.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 16, p. 10385, doi. 10.1093/nar/gku721

By:

Zhao, Yuanjun;
Cheng, De;
Wang, Shuwen;
Zhu, Jiyue

Publication type:

Article

Genomic HEXploring allows landscaping of novel potential splicing regulatory elements.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 16, p. 10681, doi. 10.1093/nar/gku736

By:

Erkelenz, Steffen;
Theiss, Stephan;
Otte, Marianne;
Widera, Marek;
Peter, Jan Otto;
Schaal, Heiner

Publication type:

Article

Initiator protein dimerization plays a key role in replication control of Vibrio cholerae chromosome 2.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 16, p. 10538, doi. 10.1093/nar/gku771

By:

Jha, Jyoti K.;
Ghirlando, Rodolfo;
Chattoraj, Dhruba K.

Publication type:

Article

Potential for genomic instability associated with retrotranspositionally-incompetent L1 loci.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 16, p. 10488, doi. 10.1093/nar/gku687

By:

Kines, Kristine J.;
Sokolowski, Mark;
deHaro, Dawn L.;
Christian, Claiborne M.;
Belancio, Victoria P.

Publication type:

Article