Works matching IS 03051048 AND DT 2015 AND VI 43 AND IP 6

Results: 41

iRNA-seq: computational method for genome-wide assessment of acute transcriptional regulation from total RNA-seq data.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 6, p. 1, doi. 10.1093/nar/gku1365

By:

Skat Madsen, Jesper Grud;
Schmidt, Søren Fisker;
Larsen, Bjørk Ditlev;
Loft, Anne;
Nielsen, Ronni;
Mandrup, Susanne

Publication type:

Article

Protein–RNA specificity by high-throughput principal component analysis of NMR spectra.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 6, p. e41, doi. 10.1093/nar/gku1372

By:

Collins, Katherine M.;
Oregioni, Alain;
Robertson, Laura E.;
Kelly, Geoff;
Ramos, Andres

Publication type:

Article

Crystal structures of the Gon7/Pcc1 and Bud32/Cgi121 complexes provide a model for the complete yeast KEOPS complex.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 6, p. 3358, doi. 10.1093/nar/gkv155

By:

Wenhua Zhang;
Collinet, Bruno;
Graille, Marc;
Daugeron, Marie-Claire;
Lazar, Noureddine;
Libri, Domenico;
Durand, Dominique;
van Tilbeurgh, Herman

Publication type:

Article

Brr2 plays a role in spliceosomal activation in addition to U4/U6 unwinding.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 6, p. 3286, doi. 10.1093/nar/gkv062

By:

Lingdi Zhang;
Xueni Li;
Hill, Ryan C.;
Yan Qiu;
Wenzheng Zhang;
Hansen, Kirk C.;
Rui Zhao

Publication type:

Article

Corrigendum.

Published in:: Nucleic Acids Research, 2015, v. 43, n. 6, p. 3405, doi. 10.1093/nar/gkv049
Publication type:: Article

A new recombineering system for Photorhabdus and Xenorhabdus.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 6, p. 1, doi. 10.1093/nar/gku1336

By:

Jia Yin;
Hongbo Zhu;
Liqiu Xia;
Xuezhi Ding;
Hoffmann, Thomas;
Hoffmann, Michael;
Xiaoying Bian;
Müller, Rolf;
Jun Fu;
Stewart, A. Francis;
Youming Zhang

Publication type:

Article

U1 snRNP is mislocalized in ALS patient fibroblasts bearing NLS mutations in FUS and is required for motor neuron outgrowth in zebrafish.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 6, p. 3208, doi. 10.1093/nar/gkv157

By:

Yong Yu;
Binkai Chi;
Wei Xia;
Gangopadhyay, Jaya;
Tomohiro Yamazaki;
Winkelbauer-Hurt, Marlene E.;
Shanye Yin;
Eliasse, Yoan;
Adams, Edward;
Shaw, Christopher E.;
Reed, Robin

Publication type:

Article

An LRP16-containing preassembly complex contributes to NF-κB activation induced by DNA double-strand breaks.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 6, p. 3167, doi. 10.1093/nar/gkv161

By:

Zhiqiang Wu;
Chunmeng Wang;
Miaomiao Bai;
Xiaolei Li;
Qian Mei;
Xiang Li;
Yao Wang;
Xiaobing Fu;
Guangbin Luo;
Weidong Han

Publication type:

Article

Short antisense-locked nucleic acids (all-LNAs) correct alternative splicing abnormalities in myotonic dystrophy.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 6, p. 3318, doi. 10.1093/nar/gkv163

By:

Wojtkowiak-Szlachcic, Agnieszka;
Taylor, Katarzyna;
Stepniak-Konieczna, Ewa;
Sznajder, Lukasz J.;
Mykowska, Agnieszka;
Sroka, Joanna;
Thornton, Charles A.;
Sobczak, Krzysztof

Publication type:

Article

Structural insight into the mechanism of stabilization of the 7SK small nuclear RNA by LARP7.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 6, p. 3373, doi. 10.1093/nar/gkv173

By:

Emiko Uchikawa;
Natchiar, Kundhavai S.;
Xiao Han;
Proux, Florence;
Roblin, Pierre;
Zhang, Elodie;
Durand, Alexandre;
Klaholz, Bruno P.;
Dock-Bregeon, Anne-Catherine

Publication type:

Article

Silent mutations at codons 65 and 66 in reverse transcriptase alleviate indel formation and restore fitness in subtype B HIV-1 containing D67N and K70R drug resistance mutations.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 6, p. 3256, doi. 10.1093/nar/gkv128

By:

Telwatte, Sushama;
Hearps, Anna C.;
Johnson, Adam;
Latham, Catherine F.;
Moore, Katie;
Agius, Paul;
Tachedjian, Mary;
Sonza, Secondo;
Sluis-Cremer, Nicolas;
Harrigan, P. Richard;
Tachedjian, Gilda

Publication type:

Article

The ribonucleotidyl transferase USIP-1 acts with SART3 to promote U6 snRNA recycling.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 6, p. 3344, doi. 10.1093/nar/gkv196

By:

Rüegger, Stefan;
Miki, Takashi S.;
Hess, Daniel;
Großhans, Helge

Publication type:

Article

Hypoxia-induced gene expression results from selective mRNA partitioning to the endoplasmic reticulum.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 6, p. 3219, doi. 10.1093/nar/gkv167

By:

Staudacher, Jonas J.;
Naarmann-de Vries, Isabel S.;
Ujvari, Stefanie J.;
Klinger, Bertram;
Kasim, Mumtaz;
Benko, Edgar;
Ostareck-Lederer, Antje;
Ostareck, Dirk H.;
Persson, Anja Bondke;
Lorenzen, Stephan;
Meier, Jochen C.;
Blüthgen, Nils;
Persson, Pontus B.;
Henrion-Caude, Alexandra;
Mrowka, Ralf;
Fähling, Michael

Publication type:

Article

Insight into biases and sequencing errors for amplicon sequencing with the Illumina MiSeq platform.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 6, p. 1, doi. 10.1093/nar/gku1341

By:

Schirmer, Melanie;
Ijaz, Umer Z.;
D'Amore, Rosalinda;
Hall, Neil;
Sloan, William T.;
Quince, Christopher

Publication type:

Article

Genome-wide CIITA-binding profile identifies sequence preferences that dictate function versus recruitment.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 6, p. 3128, doi. 10.1093/nar/gkv182

By:

Scharer, Christopher D.;
Choi, Nancy M.;
Barwick, Benjamin G.;
Majumder, Parimal;
Lohsen, Sarah;
Boss, Jeremy M.

Publication type:

Article

CarD stabilizes mycobacterial open complexes via a two-tiered kinetic mechanism.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 6, p. 3272, doi. 10.1093/nar/gkv078

By:

Rammohan, Jayan;
Manzano, Ana Ruiz;
Garner, Ashley L.;
Stallings, Christina L.;
Galburt, Eric A.

Publication type:

Article

Stabilization of eukaryotic ribosomal termination complexes by deacylated tRNA.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 6, p. 3332, doi. 10.1093/nar/gkv171

By:

Susorov, Denis;
Mikhailova, Tatiana;
Ivanov, Alexander;
Sokolova, Elizaveta;
Alkalaeva, Elena

Publication type:

Article

Identification of metabolically stable 5'-phosphate analogs that support single-stranded siRNA activity.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 6, p. 2993, doi. 10.1093/nar/gkv162

By:

Prakash, Thazha P.;
Lima, Walt F.;
Murray, Heather M.;
Wenyu Li;
Kinberger, Garth A.;
Chappell, Alfred E.;
Gaus, Hans;
Seth, Punit P.;
Bhat, Balkrishen;
Crooke, Stanley T.;
Swayze, Eric E.

Publication type:

Article

CODEX: a normalization and copy number variation detection method for whole exome sequencing.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 6, p. 1, doi. 10.1093/nar/gku1363

By:

Yuchao Jiang;
Oldridge, Derek A.;
Diskin, Sharon J.;
Zhang, Nancy R.

Publication type:

Article

A novel role for the mono-ADP-ribosyltransferase PARP14/ARTD8 in promoting homologous recombination and protecting against replication stress.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 6, p. 3143, doi. 10.1093/nar/gkv147

By:

Nicolae, Claudia M.;
Aho, Erin R.;
Choe, Katherine N.;
Constantin, Daniel;
He-Juan Hu;
Deokjae Lee;
Kyungjae Myung;
Moldovan, George-Lucian

Publication type:

Article

RAD54 family translocases counter genotoxic effects of RAD51 in human tumor cells.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 6, p. 3180, doi. 10.1093/nar/gkv175

By:

Mason, Jennifer M.;
Dusad, Kritika;
Wright, William Douglass;
Grubb, Jennifer;
Budke, Brian;
Heyer, Wolf-Dietrich;
Connell, Philip P.;
Weichselbaum, Ralph R.;
Bishop, Douglas K.

Publication type:

Article

Multimerization of Drosophila sperm protein Mst77F causes a unique condensed chromatin structure.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 6, p. 3033, doi. 10.1093/nar/gkv015

By:

Kost, Nils;
Kaiser, Sophie;
Ostwal, Yogesh;
Riedel, Dietmar;
Stützer, Alexandra;
Nikolov, Miroslav;
Rathke, Christina;
Renkawitz-Pohl, Renate;
Fischle, Wolfgang

Publication type:

Article

A positioned +1 nucleosome enhances promoter-proximal pausing.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 6, p. 3068, doi. 10.1093/nar/gkv149

By:

Jimeno-González, Silvia;
Ceballos-Chávez, María;
Reyes, José C.

Publication type:

Article

A genome-wide analysis of Cas9 binding specificity using ChIP-seq and targeted sequence capture.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 6, p. 3389, doi. 10.1093/nar/gkv137

By:

O'Geen, Henriette;
Henry, Isabelle M.;
Bhakta, Mital S.;
Meckler, Joshua F.;
Segal, David J.

Publication type:

Article

Genome engineering using a synthetic gene circuit in Bacillus subtilis.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 6, p. 1, doi. 10.1093/nar/gku1380

By:

Da-Eun Jeong;
Seung-Hwan Park;
Jae-Gu Pan;
Eui-Joong Kim;
Soo-Keun Choi

Publication type:

Article

Insulin-response epigenetic activation of Egr-1 and JunB genes at the nuclear periphery by A-type lamin-associated pY19-Caveolin-2 in the inner nuclear membrane.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 6, p. 3114, doi. 10.1093/nar/gkv181

By:

Kyuho Jeong;
Hayeong Kwon;
Jaewoong Lee;
Donghwan Jang;
Yunbae Pak

Publication type:

Article

Malleable nature of mRNA-protein compositional complementarity and its functional significance.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 6, p. 3012, doi. 10.1093/nar/gkv166

By:

Hlevnjak, Mario;
Zagrovic, Bojan

Publication type:

Article

Immediate chromatin immunoprecipitation and on-bead quantitative PCR analysis: a versatile and rapid ChIP procedure.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 6, p. 1, doi. 10.1093/nar/gku1347

By:

Harmeyer, Kayla M.;
South, Paul F.;
Bishop, Brett;
Ogas, Joe;
Briggs, Scott D.

Publication type:

Article

Trade-offs between tRNA abundance and mRNA secondary structure support smoothing of translation elongation rate.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 6, p. 3022, doi. 10.1093/nar/gkv199

By:

Gorochowski, Thomas E.;
Ignatova, Zoya;
Bovenberg, Roel A. L.;
Roubos, Johannes A.

Publication type:

Article

Cwc21p promotes the second step conformation of the spliceosome and modulates 3' splice site selection.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 6, p. 3309, doi. 10.1093/nar/gkv159

By:

Gautam, Amit;
Grainger, Richard J.;
Vilardell, J.;
Barrass, J. David;
Beggs, Jean D.

Publication type:

Article

qDNAmod: a statistical model-based tool to reveal intercellular heterogeneity of DNA modification from SMRT sequencing data.

Published in:: Nucleic Acids Research, 2015, v. 43, n. 6, p. 3406, doi. 10.1093/nar/gkv067
Publication type:: Article

Single molecule TPM analysis of the catalytic pentad mutants of Cre and Flp site-specific recombinases: contributions of the pentad residues to the pre-chemical steps of recombination.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 6, p. 3237, doi. 10.1093/nar/gkv114

By:

Hsiu-Fang Fan;
Yong-Song Cheng;
Chien-Hui Ma;
Jayaram, Makkuni

Publication type:

Article

An intrinsically disordered region of methyl-CpG binding domain protein 2 (MBD2) recruits the histone deacetylase core of the NuRD complex.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 6, p. 3100, doi. 10.1093/nar/gkv168

By:

Desai, Megha A.;
Webb, Heather D.;
Sinanan, Leander M.;
Scarsdale, J. Neel;
Walavalkar, Ninad M.;
Ginder, Gordon D.;
Williams, Jr, David C.

Publication type:

Article

How 'arm-twisting' by the inducer triggers activation of the MalT transcription factor, a typical signal transduction ATPase with numerous domains (STAND).

Published in:

Nucleic Acids Research, 2015, v. 43, n. 6, p. 3089, doi. 10.1093/nar/gkv158

By:

Danot, Olivier

Publication type:

Article

Dissecting the behavior and function of MBD3 in DNA methylation homeostasis by single-molecule spectroscopy and microscopy.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 6, p. 3046, doi. 10.1093/nar/gkv098

By:

Irudayaraj, Joseph;
Yi Cui

Publication type:

Article

The contribution of cohesin-SA1 to gene expression and chromatin architecture in two murine tissues.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 6, p. 3056, doi. 10.1093/nar/gkv144

By:

Cuadrado, Ana;
Remeseiro, Silvia;
Graña, Osvaldo;
Pisano, David G.;
Losada, Ana

Publication type:

Article

The architecture of ArgR-DNA complexes at the genome-scale in Escherichia coli.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 6, p. 3079, doi. 10.1093/nar/gkv150

By:

Suhyung Cho;
Yoo-Bok Cho;
Taek Jin Kang;
Sun Chang Kim;
Palsson, Bernhard;
Byung-Kwan Cho

Publication type:

Article

Effects of DNA<sub>3'</sub>pp<sub>5'</sub>G capping on 3' end repair reactions and of an embedded pyrophosphate-linked guanylate on ribonucleotide surveillance.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 6, p. 3197, doi. 10.1093/nar/gkv179

By:

Chauleau, Mathieu;
Das, Ushati;
Shuman, Stewart

Publication type:

Article

New insights into stop codon recognition by eRF1.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 6, p. 3298, doi. 10.1093/nar/gkv154

By:

Blanchet, Sandra;
Rowe, Michelle;
Von der Haar, Tobias;
Fabret, Céline;
Demais, Stéphane;
Howard, Mark J.;
Namy, Olivier

Publication type:

Article

Involvement of ATM in homologous recombination after end resection and RAD51 nucleofilament formation.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 6, p. 3154, doi. 10.1093/nar/gkv160

By:

Bakr, A.;
Oing, C.;
Köcher, S.;
Borgmann, K.;
Dornreiter, I.;
Petersen, C.;
Dikomey, E.;
Mansour, W. Y.

Publication type:

Article

TELP, a sensitive and versatile library construction method for next-generation sequencing.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 6, p. 1, doi. 10.1093/nar/gku818

By:

Xu Peng;
Jingyi Wu;
Brunmeir, Reinhard;
Sun-Yee Kim;
Qiongyi Zhang;
Chunming Ding;
Weiping Han;
Wei Xie;
Feng Xu

Publication type:

Article