Works matching IS 03051048 AND DT 2015 AND VI 43 AND IP 1

Results: 62

An efficient and sensitive method for preparing cDNA libraries from scarce biological samples.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 1, p. e1, doi. 10.1093/nar/gku637

By:

Sterling, Catherine H.;
Veksler-Lublinsky, Isana;
Ambros, Victor

Publication type:

Article

Subgenomic promoter recognition by the norovirus RNA-dependent RNA polymerases.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 1, p. 446, doi. 10.1093/nar/gku1292

By:

Xiaoyan Lin;
Thorne, Lucy;
Zhinan Jin;
Hammad, Loubna A.;
Li, Serena;
Deval, Jerome;
Goodfellow, Ian G.;
Kao, C. Cheng

Publication type:

Article

Identifying causal regulatory SNPs in ChIP-seq enhancers.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 1, p. 225, doi. 10.1093/nar/gku1318

By:

Di Huang;
Ovcharenko, Ivan

Publication type:

Article

Active destabilization of base pairs by a DNA glycosylase wedge initiates damage recognition.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 1, p. 272, doi. 10.1093/nar/gku1300

By:

Kuznetsov, Nikita A.;
Bergonzo, Christina;
Campbell, Arthur J.;
Haoquan Li;
Mechetin, Grigory V.;
de los Santos, Carlos;
Grollman, Arthur P.;
Fedorova, Olga S.;
Zharkov, Dmitry O.;
Simmerling, Carlos

Publication type:

Article

Novel RNA chaperone domain of RNA-binding protein La is regulated by AKT phosphorylation.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 1, p. 581, doi. 10.1093/nar/gku1309

By:

Kuehnert, Julia;
Sommer, Gunhild;
Zierk, Avery W.;
Fedarovich, Alena;
Brock, Alexander;
Fedarovich, Dzmitry;
Heise, Tilman

Publication type:

Article

Rescue of splicing-mediated intron loss maximizes expression in lentiviral vectors containing the human ubiquitin C promoter.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 1, p. 682, doi. 10.1093/nar/gku1312

By:

Cooper, Aaron R.;
Lill, Georgia R.;
Gschweng, Eric H.;
Kohn, Donald B.

Publication type:

Article

Multilayer regulatory mechanisms control cleavage factor I proteins in filamentous fungi.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 1, p. 179, doi. 10.1093/nar/gku1297

By:

Rodríguez-Romero, J.;
Franceschetti, M.;
Bueno, E.;
Sesma, A.

Publication type:

Article

NERF encodes a RING E3 ligase important for drought resistance and enhances the expression of its antisense gene NFYA5 in Arabidopsis.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 1, p. 607, doi. 10.1093/nar/gku1325

By:

Wei Gao;
Wenwen Liu;
Meng Zhao;
Wen-Xue Li

Publication type:

Article

Adhesin competence repressor (AdcR) from Streptococcus pyogenes controls adaptive responses to zinc limitation and contributes to virulence.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 1, p. 418, doi. 10.1093/nar/gku1304

By:

Sanson, Misu;
Makthal, Nishanth;
Flores, Anthony R.;
Olsen, Randall J.;
Musser, James M.;
Kumaraswami, Muthiah

Publication type:

Article

Small antisense oligonucleotides against G-quadruplexes: specific mRNA translational switches.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 1, p. 595, doi. 10.1093/nar/gku1311

By:

Rouleau, Samuel G.;
Beaudoin, Jean-Denis;
Bisaillon, Martin;
Perreault, Jean-Pierre

Publication type:

Article

An optimized kit-free method for making strand-specific deep sequencing libraries from RNA fragments.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 1, p. 1, doi. 10.1093/nar/gku1235

By:

Heyer, Erin E.;
Ozadam, Hakan;
Ricci, Emiliano P.;
Cenik, Can;
Moore, Melissa J.

Publication type:

Article

Leveraging cross-link modification events in CLIP-seq for motif discovery.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 1, p. 95, doi. 10.1093/nar/gku1288

By:

Bahrami-Samani, Emad;
Penalva, Luiz O. F.;
Smith, Andrew D.;
Uren, Philip J.

Publication type:

Article

An archaeal CRISPR type III-B system exhibiting distinctive RNA targeting features and mediating dual RNA and DNA interference.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 1, p. 406, doi. 10.1093/nar/gku1302

By:

Wenfang Peng;
Mingxia Feng;
Xu Feng;
Yun Xiang Liang;
Qunxin She

Publication type:

Article

Mg<sup>2+</sup>-dependent conformational changes and product release during DNA-catalyzed RNA ligation monitored by Bimane fluorescence.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 1, p. 40, doi. 10.1093/nar/gku1268

By:

Turriani, Elisa;
Höbartner, Claudia;
Jovin, Thomas M.

Publication type:

Article

CSB interacts with SNM1A and promotes DNA interstrand crosslink processing.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 1, p. 247, doi. 10.1093/nar/gku1279

By:

Iyama, Teruaki;
Lee, Sook Y.;
Berquist, Brian R.;
Gileadi, Opher;
Bohr, Vilhelm A.;
Seidman, Michael M.;
McHugh, Peter J.;
Wilson III, David M.

Publication type:

Article

The high mobility group A2 protein epigenetically silences the Cdh1 gene during epithelial-to-mesenchymal transition.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 1, p. 162, doi. 10.1093/nar/gku1293

By:

Tan, E-Jean;
Kaoru Kahata;
Idås, Oskar;
Thuault, Sylvie;
Heldin, Carl-Henrik;
Moustakas, Aristidis

Publication type:

Article

LKB1 preserves genome integrity by stimulating BRCA1 expression.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 1, p. 259, doi. 10.1093/nar/gku1294

By:

Gupta, Romi;
Liu, Alex. Y.;
Glazer, Peter M.;
Wajapeyee, Narendra

Publication type:

Article

A new heavy lanthanide-dependent DNAzyme displaying strong metal cooperativity and unrescuable phosphorothioate effect.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 1, p. 461, doi. 10.1093/nar/gku1296

By:

Jimmy Huang, Po-Jung;
Vazin, Mahsa;
Matuszek, Żaneta;
Juewen Liu

Publication type:

Article

CRISPR RNA binding and DNA target recognition by purified Cascade complexes from Escherichia coli.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 1, p. 530, doi. 10.1093/nar/gku1285

By:

Beloglazova, Natalia;
Kuznedelov, Konstantin;
Flick, Robert;
Datsenko, Kirill A.;
Brown, Greg;
Popovic, Ana;
Lemak, Sofia;
Semenova, Ekaterina;
Severinov, Konstantin;
Yakunin, Alexander F.

Publication type:

Article

The association of late-acting snoRNPs with human pre-ribosomal complexes requires the RNA helicase DDX21.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 1, p. 553, doi. 10.1093/nar/gku1291

By:

Sloan, Katherine E.;
Leisegang, Matthias S.;
Doebele, Carmen;
Ramírez, Ana S.;
Simm, Stefan;
Safferthal, Charlotta;
Kretschmer, Jens;
Schorge, Tobias;
Markoutsa, Stavroula;
Haag, Sara;
Karas, Michael;
Ebersberger, Ingo;
Schleiff, Enrico;
Watkins, Nicholas J.;
Bohnsack, Markus T.

Publication type:

Article

A novel RNA molecular signature for activation of 2′-5′ oligoadenylate synthetase-1.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 1, p. 544, doi. 10.1093/nar/gku1289

By:

Vachon, Virginia K.;
Calderon, Brenda M.;
Conn, Graeme L.

Publication type:

Article

High-resolution genetic analysis of the requirements for horizontal transmission of the ESBL plasmid from Escherichia coli O104:H4.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 1, p. 348, doi. 10.1093/nar/gku1262

By:

Yamaichi, Yoshiharu;
Chao, Michael C.;
Sasabe, Jumpei;
Clark, Lars;
Davis, Brigid M.;
Nozomi Yamamoto;
Hiroshi Mori;
Ken Kurokawa;
Waldor, Matthew K.

Publication type:

Article

Rho and RNase play a central role in FMN riboswitch regulation in Corynebacterium glutamicum.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 1, p. 520, doi. 10.1093/nar/gku1281

By:

Norihiko Takemoto;
Yuya Tanaka;
Masayuki Inui

Publication type:

Article

Depletion of REF/Aly alters gene expression and reduces RNA polymerase II occupancy.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 1, p. 504, doi. 10.1093/nar/gku1278

By:

Stubbs, Sarah H.;
Conrad, Nicholas K.

Publication type:

Article

Tracing the molecular basis of transcriptional dynamics in noisy data by using an experiment-based mathematical model.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 1, p. 153, doi. 10.1093/nar/gku1272

By:

Rybakova, Katja N.;
Tomaszewska, Aleksandra;
van Mourik, Simon;
Blom, Joke;
Westerhoff, Hans V.;
Carlberg, Carsten;
Bruggeman, Frank J.

Publication type:

Article

Bacterial initiators form dynamic filaments on single-stranded DNA monomer by monomer.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 1, p. 396, doi. 10.1093/nar/gku1284

By:

Hsin-Mei Cheng;
Gröger, Philip;
Hartmann, Andreas;
Schlierf, Michael

Publication type:

Article

Site-specific fluorescence dynamics in an RNA 'thermometer' reveals the role of ribosome binding in its temperature-sensitive switch function.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 1, p. 493, doi. 10.1093/nar/gku1264

By:

Narayan, Satya;
Kombrabail, Mamta H.;
Das, Sudipta;
Singh, Himanshu;
Chary, Kandala V. R.;
Rao, Basuthkar J.;
Krishnamoorthy, Guruswamy

Publication type:

Article

The conserved histone deacetylase Rpd3 and its DNA binding subunit Ume6 control dynamic transcript architecture during mitotic growth and meiotic development.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 1, p. 115, doi. 10.1093/nar/gku1185

By:

Lardenois, Aurélie;
Stuparevic, Igor;
Yuchen Liu;
Law, Michael J.;
Becker, Emmanuelle;
Smagulova, Fatima;
Waern, Karl;
Guilleux, Marie-Hélène;
Horecka, Joe;
Angela Chu;
Kervarrec, Christine;
Strich, Randy;
Snyder, Mike;
Davis, Ronald W.;
Steinmetz, Lars M.;
Primig, Michael

Publication type:

Article

Human cells lacking coilin and Cajal bodies are proficient in telomerase assembly, trafficking and telomere maintenance.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 1, p. 385, doi. 10.1093/nar/gku1277

By:

Yanlian Chen;
Zhiqiang Deng;
Shuai Jiang;
Qian Hu;
Haiying Liu;
Zhou Songyang;
Wenbin Ma;
Shi Chen;
Yong Zhao

Publication type:

Article

Bi-specific splice-switching PMO oligonucleotides conjugated via a single peptide active in a mouse model of Duchenne muscular dystrophy.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 1, p. 29, doi. 10.1093/nar/gku1256

By:

Shabanpoor, Fazel;
McClorey, Graham;
Saleh, Amer F.;
Järver, Peter;
Wood, Matthew J. A.;
Gait, Michael J.

Publication type:

Article

Flexibility and structural conservation in a c-KIT G-quadruplex.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 1, p. 629, doi. 10.1093/nar/gku1282

By:

Wei, Dengguo;
Husby, Jarmila;
Neidle, Stephen

Publication type:

Article

Comparative genomic analysis of Helicobacter pylori from Malaysia identifies three distinct lineages suggestive of differential evolution.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 1, p. 324, doi. 10.1093/nar/gku1271

By:

Kumar, Narender;
Mariappan, Vanitha;
Baddam, Ramani;
Lankapalli, Aditya K.;
Shaik, Sabiha;
Khean-Lee Goh;
Mun Fai Loke;
Perkins, Tim;
Benghezal, Mohammed;
Hasnain, Seyed E.;
Vadivelu, Jamuna;
Marshall, Barry J.;
Ahmed, Niyaz

Publication type:

Article

Assessing the gene regulatory properties of Argonaute-bound small RNAs of diverse genomic origin.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 1, p. 470, doi. 10.1093/nar/gku1242

By:

Thomson, Daniel W.;
Pillman, Katherine A.;
Anderson, Matthew L.;
Lawrence, David M.;
Toubia, John;
Goodall, Gregory J.;
Bracken, Cameron P.

Publication type:

Article

Efficient programmable gene silencing by Cascade.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 1, p. 237, doi. 10.1093/nar/gku1257

By:

Rath, Devashish;
Amlinger, Lina;
Hoekzema, Mirthe;
Devulapally, Praneeth Reddy;
Lundgren, Magnus

Publication type:

Article

Topological constraints strongly affect chromatin reconstitution in silico.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 1, p. 63, doi. 10.1093/nar/gku1085

By:

Brackley, C. A.;
Allan, J.;
Keszenman-Pereyra, D.;
Marenduzzo, D.

Publication type:

Article

Estimating binding properties of transcription factors from genome-wide binding profiles.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 1, p. 84, doi. 10.1093/nar/gku1269

By:

Zabet, Nicolae Radu;
Adryan, Boris

Publication type:

Article

Elimination of cap structures generated by mRNA decay involves the new scavenger mRNA decapping enzyme Aph1/FHIT together with DcpS.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 1, p. 482, doi. 10.1093/nar/gku1251

By:

Taverniti, Valerio;
Séraphin, Bertrand

Publication type:

Article

Identification of SMG6 cleavage sites and a preferred RNA cleavage motif by global analysis of endogenous NMD targets in human cells.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 1, p. 309, doi. 10.1093/nar/gku1258

By:

Schmidt, Skye A.;
Foley, Patricia L.;
Dong-Hoon Jeong;
Rymarquis, Linda A.;
Doyle, Francis;
Tenenbaum, Scott A.;
Belasco, Joel G.;
Green, Pamela J.

Publication type:

Article

The genome-scale interplay amongst xenogene silencing, stress response and chromosome architecture in Escherichia coli.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 1, p. 295, doi. 10.1093/nar/gku1229

By:

Srinivasan, Rajalakshmi;
Scolari, Vittore Ferdinando;
Lagomarsino, Marco Cosentino;
Narain Seshasayee, Aswin Sai

Publication type:

Article

SnoVectors for nuclear expression of RNA.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 1, p. 1, doi. 10.1093/nar/gku1050

By:

Qing-Fei Yin;
Shi-Bin Hu;
Ye-Fen Xu;
Li Yang;
Carmichael, Gordon G.;
Ling-Ling Chen

Publication type:

Article

Extendable blocking probe in reverse transcription for analysis of RNA variants with superior selectivity.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 1, p. 1, doi. 10.1093/nar/gku1048

By:

Ho, Tho H.;
Dang, Kien X.;
Lintula, Susanna;
Hotakainen, Kristina;
Lin Feng;
Olkkonen, Vesa M.;
Verschuren, Emmy W.;
Tenkanen, Tuomas;
Haglund, Caj;
Kolho, Kaija-Leena;
Stenman, Ulf-Hakan;
Stenman, Jakob

Publication type:

Article

DEEP: a general computational framework for predicting enhancers.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 1, p. 1, doi. 10.1093/nar/gku1058

By:

Kleftogiannis, Dimitrios;
Kalnis, Panos;
Bajic, Vladimir B.

Publication type:

Article

Specific recognition of guanines in non-duplex regions of nucleic acids with potassium tungstate and hydrogen peroxide.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 1, p. 1, doi. 10.1093/nar/gku1025

By:

Wuxiang Mao;
Xiaowei Xu;
Huan He;
Rong Huang;
Xi Chen;
Heng Xiao;
Zhenduo Yu;
Yi Liu;
Xiang Zhou

Publication type:

Article

Repurposing endogenous type I CRISPR-Cas systems for programmable gene repression.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 1, p. 674, doi. 10.1093/nar/gku971

By:

Luo, Michelle L.;
Mullis, Adam S.;
Leenay, Ryan T.;
Beisel, Chase L.

Publication type:

Article

Comprehensive discovery of DNA motifs in 349 human cells and tissues reveals new features of motifs.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 1, p. 74, doi. 10.1093/nar/gku1261

By:

Zheng, Yiyu;
Li, Xiaoman;
Hu, Haiyan

Publication type:

Article

Meclofenamic acid selectively inhibits FTO demethylation of m6A over ALKBH5.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 1, p. 373, doi. 10.1093/nar/gku1276

By:

Huang, Yue;
Yan, Jingli;
Li, Qi;
Li, Jiafei;
Gong, Shouzhe;
Zhou, Hu;
Gan, Jianhua;
Jiang, Hualiang;
Jia, Gui-Fang;
Luo, Cheng;
Yang, Cai-Guang

Publication type:

Article

Structural basis for the interaction of protein S1 with the Escherichia coli ribosome.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 1, p. 661, doi. 10.1093/nar/gku1314

By:

Byrgazov, Konstantin;
Grishkovskaya, Irina;
Arenz, Stefan;
Coudevylle, Nicolas;
Temmel, Hannes;
Wilson, Daniel N.;
Djinovic-Carugo, Kristina;
Moll, Isabella

Publication type:

Article

Operator recognition by the ROK transcription factor family members, NagC and Mlc.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 1, p. 361

By:

Bréchemier-Baey, Dominique;
Domínguez-Ramírez, Lenin;
Oberto, Jacques;
Plumbridge, Jacqueline

Publication type:

Article

Mycobacterial RNA polymerase forms unstable open promoter complexes that are stabilized by CarD.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 1, p. 433, doi. 10.1093/nar/gku1231

By:

Davis, Elizabeth;
Chen, James;
Leon, Katherine;
Darst, Seth A.;
Campbell, Elizabeth A.

Publication type:

Article

A common set of distinct features that characterize noncoding RNAs across multiple species.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 1, p. 104, doi. 10.1093/nar/gku1316

By:

Hu, Long;
Di, Chao;
Kai, Mingxuan;
Yang, Yu-Cheng T.;
Li, Yang;
Qiu, Yunjiang;
Hu, Xihao;
Yip, Kevin Y.;
Zhang, Michael Q.;
Lu, Zhi John

Publication type:

Article