Works matching IS 03051048 AND DT 2014 AND VI 42 AND IP 1

Results: 57

To be or not to be: regulation of restriction– modification systems and other toxin–antitoxin systems.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 1, p. 70, doi. 10.1093/nar/gkt711

By:

Mruk, Iwona;
Ichizo Kobayashi

Publication type:

Article

Type III restriction-modification enzymes: a historical perspective.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 1, p. 45, doi. 10.1093/nar/gkt616

By:

Rao, Desirazu N.;
Dryden, David T. F.;
Bheemanaik, Shivakumara

Publication type:

Article

DNA polymerases ζ and Rev1 mediate error-prone bypass of non-B DNA structures.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 1, p. 290, doi. 10.1093/nar/gkt830

By:

Northam, Matthew R.;
Moore, Elizabeth A.;
Mertz, Tony M.;
Binz, Sara K.;
Stith, Carrie M.;
Stepchenkova, Elena I.;
Wendt, Kathern L.;
Burgers, Peter M. J.;
Shcherbakova, Polina V.

Publication type:

Article

The differential extension in dsDNA bound to Rad51 filaments may play important roles in homology recognition and strand exchange.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 1, p. 526, doi. 10.1093/nar/gkt867

By:

Danilowicz, Claudia;
Peacock-Villada, Alexandra;
Vlassakis, Julea;
Facon, Adrien;
Feinstein, Efraim;
Kleckner, Nancy;
Prentiss, Mara

Publication type:

Article

EDITORIAL: NAR SURVEYS THE PAST, PRESENT AND FUTURE OF RESTRICTION ENDONUCLEASES.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 1, p. 1, doi. 10.1093/nar/gkt1324

By:

Dynan, William;
Fox, Keith;
Stoddard, Barry

Publication type:

Article

Independent parallel functions of p19 plant viral suppressor of RNA silencing required for effective suppressor activity.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 1, p. 599, doi. 10.1093/nar/gkt846

By:

Várallyay, Éva;
Oláh, Enikő;
Havelda, Zoltán

Publication type:

Article

Differential involvement of E2A-corepressor interactions in distinct leukemogenic pathways.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 1, p. 137, doi. 10.1093/nar/gkt855

By:

Gow, Chien-Hung;
Chun Guo;
Wang, David;
Hu, Qiande;
Zhang, Jinsong

Publication type:

Article

Condensin aids sister chromatid decatenation by topoisomerase II.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 1, p. 340, doi. 10.1093/nar/gkt882

By:

Charbin, Adrian;
Bouchoux, Céline;
Uhlmann, Frank

Publication type:

Article

A DNA break inducer activates the anticodon nuclease RloC and the adaptive immunity in Acinetobacter baylyi ADP1.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 1, p. 328, doi. 10.1093/nar/gkt851

By:

Klaiman, Daniel;
Steinfels-Kohn, Emmanuelle;
Kaufmann, Gabriel

Publication type:

Article

MiR-138 downregulates miRNA processing in HeLa cells by targeting RMND5A and decreasing Exportin-5 stability.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 1, p. 458, doi. 10.1093/nar/gkt839

By:

Jie Li;
Ying Chen;
Xingliang Qin;
Junzhi Wen;
Hongmei Ding;
Wei Xia;
Shaohua Li;
Xueting Su;
Wei Wang;
Hui Li;
Qiang Zhao;
Tao Fang;
Lianghu Qu;
Ningsheng Shao

Publication type:

Article

A regulatory circuit comprising GATA1/2 switch and microRNA-27a/24 promotes erythropoiesis.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 1, p. 442, doi. 10.1093/nar/gkt848

By:

Fang Wang;
Yong Zhu;
Lihua Guo;
Lei Dong;
Huiwen Liu;
Haixin Yin;
Zhongzu Zhang;
Yuxia Li;
Changzheng Liu;
Yanni Ma;
Wei Song;
Aibin He;
Qiang Wang;
Linfang Wang;
Junwu Zhang;
Jianxiong Li;
Jia Yu

Publication type:

Article

siRNA enhances DNA-mediated interferon lambda-1 response through crosstalk between RIG-I and IFI16 signalling pathway.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 1, p. 583, doi. 10.1093/nar/gkt844

By:

Hongyan Sui;
Ming Zhou;
Qian Chen;
Lane, H. Clifford;
Imamichi, Tomozumi

Publication type:

Article

A novel route to product specificity in the Suv4-20 family of histone H4K20 methyltransferases.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 1, p. 661, doi. 10.1093/nar/gkt776

By:

Southall, Stacey M.;
Cronin, Nora B.;
Wilson, Jon R.

Publication type:

Article

End-to-end crosstalk within the hepatitis C virus genome mediates the conformational switch of the 30X-tail region.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 1, p. 567, doi. 10.1093/nar/gkt841

By:

Romero-López, Cristina;
Barroso-delJesus, Alicia;
García-Sacristán, Ana;
Briones, Carlos;
Berzal-Herranz, Alfredo

Publication type:

Article

The other face of restriction: modification-dependent enzymes.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 1, p. 56, doi. 10.1093/nar/gkt747

By:

Loenen, Wil A. M.;
Raleigh, Elisabeth A.

Publication type:

Article

One-pot DNA construction for synthetic biology: the Modular Overlap-Directed Assembly with Linkers (MODAL) strategy.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 1, p. 1, doi. 10.1093/nar/gkt915

By:

Casini, Arturo;
MacDonald, James T.;
De Jonghe, Joachim;
Christodoulou, Georgia;
Freemont, Paul S.;
Baldwin, Geoff S.;
Ellis, Tom

Publication type:

Article

Highlights of the DNA cutters: a short history of the restriction enzymes.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 1, p. 3, doi. 10.1093/nar/gkt990

By:

Loenen, Wil A. M.;
Dryden, David T. F.;
Raleigh, Elisabeth A.;
Wilson, Geoffrey G.;
Murrayy, Noreen E.

Publication type:

Article

Systematic identification of transcriptional regulatory modules from protein–protein interaction networks.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 1, p. 1, doi. 10.1093/nar/gkt913

By:

Diez, Diego;
Hutchins, Andrew Paul;
Miranda-Saavedra, Diego

Publication type:

Article

Novel fluorescent genome editing reporters for monitoring DNA repair pathway utilization at endonuclease-induced breaks.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 1, p. 1, doi. 10.1093/nar/gkt872

By:

Kuhar, Ryan;
Gwiazda, Kamila S.;
Humbert, Olivier;
Mandt, Tyler;
Pangallo, Joey;
Brault, Michelle;
Khan, Iram;
Maizels, Nancy;
Rawlings, David J.;
Scharenberg, Andrew M.;
Certo, Michael T.

Publication type:

Article

Regions outside the DNA-binding domain are critical for proper in vivo specificity of an archetypal zinc finger transcription factor.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 1, p. 276, doi. 10.1093/nar/gkt895

By:

Burdach, Jon;
Funnell, Alister P. W.;
Mak, Ka Sin;
Artuz, Crisbel M.;
Wienert, Beeke;
Lim, Wooi F.;
Lit Yeen Tan;
Pearson, Richard C. M.;
Crossley, Merlin

Publication type:

Article

Compositional and structural analysis of selected chromosomal domains from Saccharomyces cerevisiae.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 1, p. 1, doi. 10.1093/nar/gkt891

By:

Hamperl, Stephan;
Brown, Christopher R.;
Garea, Ana Villar;
Perez-Fernandez, Jorge;
Bruckmann, Astrid;
Huber, Katharina;
Wittner, Manuel;
Babl, Virginia;
Stoeckl, Ulrike;
Deutzmann, Rainer;
Boeger, Hinrich;
Tschochner, Herbert;
Milkereit, Philipp;
Griesenbeck, Joachim

Publication type:

Article

Human LINE-1 restriction by APOBEC3C is deaminase independent and mediated by an ORF1p interaction that affects LINE reverse transcriptase activity.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 1, p. 396, doi. 10.1093/nar/gkt898

By:

Horn, Axel V.;
Klawitter, Sabine;
Held, Ulrike;
Berger, André;
Jaguva Vasudevan, Ananda Ayyappan;
Bock, Anja;
Hofmann, Henning;
Hanschmann, Kay-Martin O.;
Trösemeier, Jan-Hendrik;
Flory, Egbert;
Jabulowsky, Robert A.;
Han, Jeffrey S.;
Löwer, Johannes;
Löwer, Roswitha;
Münk, Carsten;
Schumann, Gerald G.

Publication type:

Article

Handling the 3-methylcytosine lesion by six human DNA polymerases members of the B-, X- and Y-families.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 1, p. 553, doi. 10.1093/nar/gkt889

By:

Furrer, Antonia;
van Loon, Barbara

Publication type:

Article

UV light-induced DNA lesions cause dissociation of yeast RNA polymerases-I and establishment of a specialized chromatin structure at rRNA genes.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 1, p. 380, doi. 10.1093/nar/gkt871

By:

Tremblay, Maxime;
Charton, Romain;
Wittner, Manuel;
Levasseur, Geneviève;
Griesenbeck, Joachim;
Conconi, Antonio

Publication type:

Article

A highly sensitive in vivo footprinting technique for condition-dependent identification of cis elements.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 1, p. 1, doi. 10.1093/nar/gkt883

By:

Gorsche, Rita;
Jovanovic, Birgit;
Gudynaite-Savitch, Loreta;
Mach, Robert L.;
Mach-Aigner, Astrid R.

Publication type:

Article

Cotranscriptional recruitment of yeast TRAMP complex to intronic sequences promotes optimal pre-mRNA splicing.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 1, p. 643, doi. 10.1093/nar/gkt888

By:

Ka-Yiu Edwin Kong;
Hei-Man Vincent Tang;
Kewu Pan;
Zhe Huang;
Tsz-Hang Jimmy Lee;
Alan G. Hinnebusch;
Dong-Yan Jin;
Chi-Ming Wong

Publication type:

Article

PRMT5-mediated histone H4 arginine-3 symmetrical dimethylation marks chromatin at G+C-rich regions of the mouse genome.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 1, p. 235, doi. 10.1093/nar/gkt884

By:

Girardot, Michael;
Hirasawa, Ryutaro;
Kacem, Salim;
Fritsch, Lauriane;
Pontis, Julien;
Kota, Satya K.;
Filipponi, Doria;
Fabbrizio, Eric;
Sardet, Claude;
Lohmann, Felix;
Kadam, Shilpa;
Ait-Si-Ali, Slimane;
Feil, Robert

Publication type:

Article

Transition-state stabilization in Escherichia coli ribonuclease P RNA-mediated cleavage of model substrates.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 1, p. 631, doi. 10.1093/nar/gkt853

By:

Shiying Wu;
Yu Chen;
Guanzhong Mao;
Trobro, Stefan;
Kwiatkowski, Marek;
Kirsebom, Leif A.

Publication type:

Article

De novo prediction of DNA-binding specificities for Cys2His2 zinc finger proteins.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 1, p. 97, doi. 10.1093/nar/gkt890

By:

Persikov, Anton V.;
Singh, Mona

Publication type:

Article

Interplay between the trigger loop and the F loop during RNA polymerase catalysis.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 1, p. 544, doi. 10.1093/nar/gkt877

By:

Miropolskaya, Nataliya;
Esyunina, Daria;
Klimašauskas, Saulius;
Nikiforov, Vadim;
Artsimovitch, Irina;
Kulbachinskiy, Andrey

Publication type:

Article

Higher-order chromatin domains link eQTLs with the expression of far-away genes.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 1, p. 87, doi. 10.1093/nar/gkt857

By:

Duggal, Geet;
Hao Wang;
Kingsford, Carl

Publication type:

Article

Malaria parasites utilize both homologous recombination and alternative end joining pathways to maintain genome integrity.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 1, p. 370, doi. 10.1093/nar/gkt881

By:

Kirkman, Laura A.;
Lawrence, Elizabeth A.;
Deitsch, Kirk W.

Publication type:

Article

The immediate upstream region of the 50-UTR from the AUG start codon has a pronounced effect on the translational efficiency in Arabidopsis thaliana.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 1, p. 485, doi. 10.1093/nar/gkt864

By:

Younghyun Kim;
Goeun Lee;
Eunhyun Jeon;
Eun ju Sohn;
Yongjik Lee;
Hyangju Kang;
Dong wook Lee;
Dae Heon Kim;
Inhwan Hwang

Publication type:

Article

The active site of TthPolX is adapted to prevent 8-oxo-dGTP misincorporation.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 1, p. 534, doi. 10.1093/nar/gkt870

By:

Garrido, Patricia;
Mejia, Edison;
Garcia-Diaz, Miguel;
Blanco, Luis;
Picher, Angel J.

Publication type:

Article

Crystal structure of tRNA m1 G9 methyltransferase Trm10: insight into the catalytic mechanism and recognition of tRNA substrate.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 1, p. 509, doi. 10.1093/nar/gkt869

By:

Zhenhua Shao;
Wei Yan;
Junhui Peng;
Xiaobing Zuo;
Yang Zou;
Fudong Li;
Deshun Gong;
Rongsheng Ma;
Jihui Wu;
Yunyu Shi;
Zhiyong Zhang;
Maikun Teng;
Xu Li;
Qingguo Gong

Publication type:

Article

Genome-wide profiling reveals stimulus-specific functions of p53 during differentiation and DNA damage of human embryonic stem cells.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 1, p. 205, doi. 10.1093/nar/gkt866

By:

Akdemir, Kadir C.;
Jain, Abhinav K.;
Allton, Kendra;
Aronow, Bruce;
Xueping Xu;
Cooney, Austin J.;
Li, Wei;
Barton, Michelle Craig

Publication type:

Article

Modulation of lysine methylation in myocyte enhancer factor 2 during skeletal muscle cell differentiation.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 1, p. 224, doi. 10.1093/nar/gkt873

By:

Choi, Jinmi;
Jang, Hyonchol;
Kim, Hyunsoo;
Lee, Jong-Hyuk;
Kim, Seong-Tae;
Cho, Eun-Jung;
Youn, Hong-Duk

Publication type:

Article

Enhancement of ADP release from the RAD51 presynaptic filament by the SWI5-SFR1 complex.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 1, p. 349, doi. 10.1093/nar/gkt879

By:

Guan-Chin Su;
Chan-I Chung;
Chia-Yu Liao;
Sheng-Wei Lin;
Cheng-Ting Tsai;
Tao Huang;
Hung-Wen Li;
Peter Chi

Publication type:

Article

Changes in transcriptional pausing modify the folding dynamics of the pH-responsive RNA element.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 1, p. 622, doi. 10.1093/nar/gkt868

By:

Nechooshtan, Gal;
Elgrably-Weiss, Maya;
Altuvia, Shoshy

Publication type:

Article

Human snRNA genes use polyadenylation factors to promote efficient transcription termination.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 1, p. 264, doi. 10.1093/nar/gkt892

By:

O’Reilly, Dawn;
Kuznetsova, Olga V.;
Laitem, Clelia;
Zaborowska, Justyna;
Dienstbier, Martin;
Murphy, Shona

Publication type:

Article

The tenacious recognition of yeast telomere sequence by Cdc13 is fully exerted by a single OB-fold domain.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 1, p. 475, doi. 10.1093/nar/gkt843

By:

Lewis, Karen A.;
Pfaff, Danielle A.;
Earley, Jennifer N.;
Altschuler, Sarah E.;
Wuttke, Deborah S.

Publication type:

Article

Scanning fluorescence correlation spectroscopy techniques to quantify the kinetics of DNA double strand break repair proteins after γ-irradiation and bleomycin treatment.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 1, p. 1, doi. 10.1093/nar/gkt908

By:

Abdisalaam, Salim;
Davis, Anthony J.;
Chen, David J.;
Alexandrakis, George

Publication type:

Article

Epstein--Barr virus-mediated transformation of B cells induces global chromatin changes independent to the acquisition of proliferation.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 1, p. 249, doi. 10.1093/nar/gkt886

By:

Hernando, Henar;
Islam, Abul B. M. M. K.;
Rodríguez-Ubreva, Javier;
Forne, Ignasi;
Ciudad, Laura;
Imhof, Axel;
Shannon-Lowe, Claire;
Ballestar, Esteban

Publication type:

Article

Computational prediction and experimental validation of microRNAs in the brown alga Ectocarpus siliculosus.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 1, p. 417, doi. 10.1093/nar/gkt856

By:

Billoud, Bernard;
Nehr, Zofia;
Bail, Aude Le;
Charrier, Bénédicte

Publication type:

Article

Epigenetic regulatory elements associate with specific histone modifications to prevent silencing of telomeric genes.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 1, p. 193, doi. 10.1093/nar/gkt880

By:

Majocchi, Stefano;
Aritonovska, Elena;
Mermod, Nicolas

Publication type:

Article

macroH2A1 histone variant represses rDNA transcription.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 1, p. 181, doi. 10.1093/nar/gkt863

By:

Rong Cong;
Sadhan Das;
Julien Douet;
Jiemin Wong;
Marcus Buschbeck;
Fabien Mongelard;
Philippe Bouvet

Publication type:

Article

Polo-like kinase 4 transcription is activated via CRE and NRF1 elements, repressed by DREAM through CDE/CHR sites and deregulated by HPV E7 protein.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 1, p. 163, doi. 10.1093/nar/gkt849

By:

Fischer, Martin;
Quaas, Marianne;
Wintsche, Axel;
Müller, Gerd A.;
Engeland, Kurt

Publication type:

Article

Nucleosome positioning and kinetics near transcription-start-site barriers are controlled by interplay between active remodeling and DNA sequence.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 1, p. 128, doi. 10.1093/nar/gkt854

By:

Parmar, Jyotsana J.;
Marko, John F.;
Padinhateeri, Ranjith

Publication type:

Article

Miravirsen (SPC3649) can inhibit the biogenesis of miR-122.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 1, p. 609, doi. 10.1093/nar/gkt852

By:

Gebert, Luca F. R.;
Rebhan, Mario A. E.;
Crivelli, Silvia E. M.;
Denzler, Rémy;
Stoffel, Markus;
Hall, Jonathan

Publication type:

Article

Type I restriction enzymes and their relatives.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 1, p. 20, doi. 10.1093/nar/gkt847

By:

Loenen, Wil A. M.;
Dryden, David T. F.;
Raleigh, Elisabeth A.;
Wilson, Geoffrey G.

Publication type:

Article