Works matching IS 03051048 AND DT 2013 AND VI 41 AND IP 10

Results: 43

Large-scale organization of ribosomal DNA chromatin is regulated by Tip5.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 10, p. 5251, doi. 10.1093/nar/gkt218

By:

Zillner, Karina;
Filarsky, Michael;
Rachow, Katrin;
Weinberger, Michael;
Längst, Gernot;
Németh, Attila

Publication type:

Article

Dissecting the roles of the histone chaperones reveals the evolutionary conserved mechanism of transcription-coupled deposition of H3.3.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 10, p. 5199, doi. 10.1093/nar/gkt220

By:

Song, Yunkyoung;
Seol, Ja-Hwan;
Yang, Jae-Hyun;
Kim, Hye-Jin;
Han, Jeung-Whan;
Youn, Hong-Duk;
Cho, Eun-Jung

Publication type:

Article

Zebrafish AID is capable of deaminating methylated deoxycytidines.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 10, p. 5457, doi. 10.1093/nar/gkt212

By:

Abdouni, Hala;
King, Justin J.;
Suliman, Mussa;
Quinlan, Matthew;
Fifield, Heather;
Larijani, Mani

Publication type:

Article

Reprogramming of microRNAs by adenosine-to-inosine editing and the selective elimination of edited microRNA precursors in mouse oocytes and preimplantation embryos.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 10, p. 5483

By:

García-López, Jesús;
Hourcade, Juan de Dios;
del Mazo, Jesús

Publication type:

Article

Non-erythroid alpha spectrin prevents telomere dysfunction after DNA interstrand cross-link damage.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 10, p. 5321, doi. 10.1093/nar/gkt235

By:

Zhang, Pan;
Herbig, Utz;
Coffman, Frederick;
Lambert, Muriel W.

Publication type:

Article

The role of DNA bending in type IIA topoisomerase function.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 10, p. 5444, doi. 10.1093/nar/gkt238

By:

Lee, Imsang;
Dong, Ken C.;
Berger, James M.

Publication type:

Article

A fully scalable online pre-processing algorithm for short oligonucleotide microarray atlases.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 10, p. e110, doi. 10.1093/nar/gkt229

By:

Lahti, Leo;
Torrente, Aurora;
Elo, Laura L.;
Brazma, Alvis;
Rung, Johan

Publication type:

Article

Lif1 SUMOylation and its role in non-homologous end-joining.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 10, p. 5341, doi. 10.1093/nar/gkt236

By:

Vigasova, Dana;
Sarangi, Prabha;
Kolesar, Peter;
Vlasáková, Danuša;
Slezakova, Zuzana;
Altmannova, Veronika;
Nikulenkov, Fedor;
Anrather, Dorothea;
Gith, Rainer;
Zhao, Xiaolan;
Chovanec, Miroslav;
Krejci, Lumir

Publication type:

Article

Co-transcriptional formation of DNA:RNA hybrid G-quadruplex and potential function as constitutional cis element for transcription control.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 10, p. 5533, doi. 10.1093/nar/gkt264

By:

Zheng, Ke-wei;
Xiao, Shan;
Liu, Jia-quan;
Zhang, Jia-yu;
Hao, Yu-hua;
Tan, Zheng

Publication type:

Article

The monomeric GIY-YIG homing endonuclease I-BmoI uses a molecular anchor and a flexible tether to sequentially nick DNA.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 10, p. 5413, doi. 10.1093/nar/gkt186

By:

Kleinstiver, Benjamin P.;
Wolfs, Jason M.;
Edgell, David R.

Publication type:

Article

Accurate detection of differential RNA processing.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 10, p. 5189, doi. 10.1093/nar/gkt211

By:

Drewe, Philipp;
Stegle, Oliver;
Hartmann, Lisa;
Kahles, André;
Bohnert, Regina;
Wachter, Andreas;
Borgwardt, Karsten;
Rätsch, Gunnar

Publication type:

Article

Re-engineering an alphoidtetO-HAC-based vector to enable high-throughput analyses of gene function.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 10, p. e107, doi. 10.1093/nar/gkt205

By:

Kononenko, Artem V.;
Lee, Nicholas C. O.;
Earnshaw, William C.;
Kouprina, Natalay;
Larionov, Vladimir

Publication type:

Article

The AfaR small RNA controls expression of the AfaD-VIII invasin in pathogenic Escherichia coli strains.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 10, p. 5469, doi. 10.1093/nar/gkt208

By:

Pichon, Christophe;
du Merle, Laurence;
Lequeutre, Isabelle;
Le Bouguénec, Chantal

Publication type:

Article

Handling realistic assumptions in hypothesis testing of 3D co-localization of genomic elements.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 10, p. 5164, doi. 10.1093/nar/gkt227

By:

Paulsen, Jonas;
Lien, Tonje G.;
Sandve, Geir Kjetil;
Holden, Lars;
Borgan, Ørnulf;
Glad, Ingrid K.;
Hovig, Eivind

Publication type:

Article

miR-23b regulates cytoskeletal remodeling, motility and metastasis by directly targeting multiple transcripts.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 10, p. 5400, doi. 10.1093/nar/gkt245

By:

Pellegrino, Loredana;
Stebbing, Justin;
Braga, Vania M.;
Frampton, Adam E.;
Jacob, Jimmy;
Buluwela, Lakjaya;
Jiao, Long R.;
Periyasamy, Manikandan;
Madsen, Chris D.;
Caley, Matthew P.;
Ottaviani, Silvia;
Roca-Alonso, Laura;
El-Bahrawy, Mona;
Coombes, R. Charles;
Krell, Jonathan;
Castellano, Leandro

Publication type:

Article

Heat shock factor 1 counteracts epigenetic silencing of nuclear transgenes in Chlamydomonas reinhardtii.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 10, p. 5273, doi. 10.1093/nar/gkt224

By:

Strenkert, Daniela;
Schmollinger, Stefan;
Schroda, Michael

Publication type:

Article

Ribosomal protein S7 regulates arsenite-induced GADD45α expression by attenuating MDM2-mediated GADD45α ubiquitination and degradation.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 10, p. 5210, doi. 10.1093/nar/gkt223

By:

Gao, Ming;
Li, Xiaoguang;
Dong, Wen;
Jin, Rui;
Ma, Hanghang;
Yang, Pingxun;
Hu, Meiru;
Li, Yi;
Hao, Yi;
Yuan, Shengtao;
Huang, Junjian;
Song, Lun

Publication type:

Article

Nucleic Acids Research - Editorial Board.

Published in:: Nucleic Acids Research, 2013, v. 41, n. 10, p. ii, doi. 10.1093/nar/gks1391
Publication type:: Article

A universal RNA structural motif docking the elbow of tRNA in the ribosome, RNAse P and T-box leaders.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 10, p. 5494, doi. 10.1093/nar/gkt219

By:

Lehmann, Jean;
Jossinet, Fabrice;
Gautheret, Daniel

Publication type:

Article

Reflex: intramolecular barcoding of long-range PCR products for sequencing multiple pooled DNAs.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 10, p. e112, doi. 10.1093/nar/gkt228

By:

Casbon, James A.;
Slatter, Andrew F.;
Musgrave-Brown, Esther;
Osborne, Robert J.;
Lichtenstein, Conrad P.;
Brenner, Sydney

Publication type:

Article

Crass: identification and reconstruction of CRISPR from unassembled metagenomic data.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 10, p. e105, doi. 10.1093/nar/gkt183

By:

Skennerton, Connor T.;
Imelfort, Michael;
Tyson, Gene W.

Publication type:

Article

Functional interplay of DnaE polymerase, DnaG primase and DnaC helicase within a ternary complex, and primase to polymerase hand-off during lagging strand DNA replication in Bacillus subtilis.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 10, p. 5303, doi. 10.1093/nar/gkt207

By:

Rannou, Olivier;
Le Chatelier, Emmanuelle;
Larson, Marilynn A.;
Nouri, Hamid;
Dalmais, Bérengère;
Laughton, Charles;
Jannière, Laurent;
Soultanas, Panos

Publication type:

Article

Active transcriptomic and proteomic reprogramming in the C. elegans nucleotide excision repair mutant xpa-1.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 10, p. 5368, doi. 10.1093/nar/gkt225

By:

Arczewska, Katarzyna D.;
Tomazella, Gisele G.;
Lindvall, Jessica M.;
Kassahun, Henok;
Maglioni, Silvia;
Torgovnick, Alessandro;
Henriksson, Johan;
Matilainen, Olli;
Marquis, Bryce J.;
Nelson, Bryant C.;
Jaruga, Pawel;
Babaie, Eshrat;
Holmberg, Carina I.;
Bürglin, Thomas R.;
Ventura, Natascia;
Thiede, Bernd;
Nilsen, Hilde

Publication type:

Article

Proofreading exonuclease on a tether: the complex between the E. coli DNA polymerase III subunits α, ɛ, θ and β reveals a highly flexible arrangement of the proofreading domain.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 10, p. 5354, doi. 10.1093/nar/gkt162

By:

Ozawa, Kiyoshi;
Horan, Nicholas P.;
Robinson, Andrew;
Yagi, Hiromasa;
Hill, Flynn R.;
Jergic, Slobodan;
Xu, Zhi-Qiang;
Loscha, Karin V.;
Li, Nan;
Tehei, Moeava;
Oakley, Aaron J.;
Otting, Gottfried;
Huber, Thomas;
Dixon, Nicholas E.

Publication type:

Article

Mechanism of DNA organization by Mycobacterium tuberculosis protein Lsr2.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 10, p. 5263, doi. 10.1093/nar/gkt249

By:

Qu, Yuanyuan;
Lim, Ci Ji;
Whang, Yixun R.;
Liu, Jun;
Yan, Jie

Publication type:

Article

A capture approach for supercoiled plasmid DNA using a triplex-forming oligonucleotide.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 10, p. e111, doi. 10.1093/nar/gkt239

By:

Ruigrok, Vincent J. B.;
Westra, Edze R.;
Brouns, Stan J. J.;
Escudé, Christophe;
Smidt, Hauke;
van der Oost, John

Publication type:

Article

Structures of DNA duplexes containing O6-carboxymethylguanine, a lesion associated with gastrointestinal cancer, reveal a mechanism for inducing pyrimidine transition mutations.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 10, p. 5524, doi. 10.1093/nar/gkt198

By:

Zhang, Fang;
Tsunoda, Masaru;
Suzuki, Kaoru;
Kikuchi, Yuji;
Wilkinson, Oliver;
Millington, Christopher L.;
Margison, Geoffrey P.;
Williams, David M.;
Czarina Morishita, Ella;
Takénaka, Akio

Publication type:

Article

Identification of a novel methyltransferase, Bmt2, responsible for the N-1-methyl-adenosine base modification of 25S rRNA in Saccharomyces cerevisiae.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 10, p. 5428, doi. 10.1093/nar/gkt195

By:

Sharma, Sunny;
Watzinger, Peter;
Kötter, Peter;
Entian, Karl-Dieter

Publication type:

Article

Nucleic Acids Research.

Published in:: Nucleic Acids Research, 2013, v. 41, n. 10, p. i, doi. 10.1093/nar/gks1366
Publication type:: Article

OLego: fast and sensitive mapping of spliced mRNA-Seq reads using small seeds.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 10, p. 5149, doi. 10.1093/nar/gkt216

By:

Wu, Jie;
Anczuków, Olga;
Krainer, Adrian R.;
Zhang, Michael Q.;
Zhang, Chaolin

Publication type:

Article

Characterization of genome-reduced fission yeast strains.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 10, p. 5382, doi. 10.1093/nar/gkt233

By:

Sasaki, Mayumi;
Kumagai, Hiromichi;
Takegawa, Kaoru;
Tohda, Hideki

Publication type:

Article

Fluorescence monitoring of riboswitch transcription regulation using a dual molecular beacon assay.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 10, p. e106, doi. 10.1093/nar/gkt190

By:

Chinnappan, Raja;
Dubé, Audrey;
Lemay, Jean-François;
Lafontaine, Daniel A.

Publication type:

Article

Surprisingly extensive mixed phylogenetic and ecological signals among bacterial Operational Taxonomic Units.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 10, p. 5175, doi. 10.1093/nar/gkt241

By:

Koeppel, Alexander F.;
Wu, Martin

Publication type:

Article

The Yin and Yang of tRNA: proper binding of acceptor end determines the catalytic balance of editing and aminoacylation.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 10, p. 5513, doi. 10.1093/nar/gkt252

By:

Tan, Min;
Wang, Meng;
Zhou, Xiao-Long;
Yan, Wei;
Eriani, Gilbert;
Wang, En-Duo

Publication type:

Article

Loop-miRs: active microRNAs generated from single-stranded loop regions.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 10, p. 5503, doi. 10.1093/nar/gkt251

By:

Winter, Julia;
Link, Steffen;
Witzigmann, Dominik;
Hildenbrand, Catherina;
Previti, Christopher;
Diederichs, Sven

Publication type:

Article

The Subread aligner: fast, accurate and scalable read mapping by seed-and-vote.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 10, p. e108, doi. 10.1093/nar/gkt214

By:

Liao, Yang;
Smyth, Gordon K.;
Shi, Wei

Publication type:

Article

Widespread inference of weighted microRNA-mediated gene regulation in cancer transcriptome analysis.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 10, p. 5553, doi. 10.1093/nar/gkt248

By:

Suzuki, Hiroshi I.;
Mihira, Hajime;
Watabe, Tetsuro;
Sugimoto, Koichi;
Miyazono, Kohei

Publication type:

Article

Subscriptions.

Published in:: Nucleic Acids Research, 2013, v. 41, n. 10, p. iii, doi. 10.1093/nar/gks1415
Publication type:: Article

Quantitative in vivo analysis of chromatin binding of Polycomb and Trithorax group proteins reveals retention of ASH1 on mitotic chromatin.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 10, p. 5235, doi. 10.1093/nar/gkt217

By:

Steffen, Philipp A.;
Fonseca, João Pedro;
Gänger, Cornelia;
Dworschak, Eva;
Kockmann, Tobias;
Beisel, Christian;
Ringrose, Leonie

Publication type:

Article

Nrf2 activation is associated with Z-DNA formation in the human HO-1 promoter.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 10, p. 5223, doi. 10.1093/nar/gkt243

By:

Maruyama, Atsushi;
Mimura, Junsei;
Harada, Nobuhiko;
Itoh, Ken

Publication type:

Article

An engineered small RNA-mediated genetic switch based on a ribozyme expression platform.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 10, p. 5542, doi. 10.1093/nar/gkt253

By:

Klauser, Benedikt;
Hartig, Jörg S.

Publication type:

Article

Probabilistic error correction for RNA sequencing.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 10, p. e109, doi. 10.1093/nar/gkt215

By:

Le, Hai-Son;
Schulz, Marcel H.;
McCauley, Brenna M.;
Hinman, Veronica F.;
Bar-Joseph, Ziv

Publication type:

Article

Induced DNA demethylation can reshape chromatin topology at the IGF2-H19 locus.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 10, p. 5290, doi. 10.1093/nar/gkt240

By:

Ito, Yoko;
Nativio, Raffaella;
Murrell, Adele

Publication type:

Article