Works matching IS 03051048 AND DT 2013 AND VI 41 AND IP 12

Results: 44

Synthesis of 18O-labeled RNA for application to kinetic studies and imaging.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 12, p. e126, doi. 10.1093/nar/gkt344

By:

Hamasaki, Tomohiro;
Matsumoto, Takahiro;
Sakamoto, Naoya;
Shimahara, Akiko;
Kato, Shiori;
Yoshitake, Ayumi;
Utsunomiya, Ayumi;
Yurimoto, Hisayoshi;
Gabazza, Esteban C.;
Ohgi, Tadaaki

Publication type:

Article

ValiDichro: a website for validating and quality control of protein circular dichroism spectra

Published in:

Nucleic Acids Research, 2013, v. 41, n. 12, p. W417, doi. 10.1093/nar/gkt287

By:

Woollett, Benjamin;
Whitmore, Lee;
Janes, Robert W.;
Wallace, B. A.

Publication type:

Article

Recognition of two distinct elements in the RNA substrate by the RNA-binding domain of the T. thermophilus DEAD box helicase Hera.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 12, p. 6259, doi. 10.1093/nar/gkt323

By:

Steimer, Lenz;
Wurm, Jan Philip;
Linden, Martin H.;
Rudolph, Markus G.;
Wöhnert, Jens;
Klostermeier, Dagmar

Publication type:

Article

Challenges in homology search: HMMER3 and convergent evolution of coiled-coil regions.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 12, p. e121, doi. 10.1093/nar/gkt263

By:

Mistry, Jaina;
Finn, Robert D.;
Eddy, Sean R.;
Bateman, Alex;
Punta, Marco

Publication type:

Article

Differential regulation by ppGpp versus pppGpp in Escherichia coli.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 12, p. 6175, doi. 10.1093/nar/gkt302

By:

Mechold, Undine;
Potrykus, Katarzyna;
Murphy, Helen;
Murakami, Katsuhiko S.;
Cashel, Michael

Publication type:

Article

Molecular basis for improved gene silencing by Dicer substrate interfering RNA compared with other siRNA variants.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 12, p. 6209, doi. 10.1093/nar/gkt200

By:

Snead, Nicholas M.;
Wu, Xiwei;
Li, Arthur;
Cui, Qi;
Sakurai, Kumi;
Burnett, John C.;
Rossi, John J.

Publication type:

Article

Quantitative assessment of Tet-induced oxidation products of 5-methylcytosine in cellular and tissue DNA.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 12, p. 6421, doi. 10.1093/nar/gkt360

By:

Shuo Liu;
Jin Wang;
Yijing Su;
Guerrero, Candace;
Yaxue Zeng;
Mitra, Devarati;
Brooks, Philip J.;
Fisher, David E.;
Hongjun Song;
Yinsheng Wang

Publication type:

Article

Single-cell paired-end genome sequencing reveals structural variation per cell cycle.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 12, p. 6119, doi. 10.1093/nar/gkt345

By:

Voet, Thierry;
Kumar, Parveen;
Van Loo, Peter;
Cooke, Susanna L.;
Marshall, John;
Lin, Meng-Lay;
Zamani Esteki, Masoud;
Van der Aa, Niels;
Mateiu, Ligia;
McBride, David J.;
Bignell, Graham R.;
McLaren, Stuart;
Teague, Jon;
Butler, Adam;
Raine, Keiran;
Stebbings, Lucy A.;
Quail, Michael A.;
D’Hooghe, Thomas;
Moreau, Yves;
Futreal, P. Andrew

Publication type:

Article

Transient RNA structure features are evolutionarily conserved and can be computationally predicted.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 12, p. 6273, doi. 10.1093/nar/gkt319

By:

Zhu, Jing Yun A.;
Steif, Adi;
Proctor, Jeff R.;
Meyer, Irmtraud M.

Publication type:

Article

Monitoring eukaryotic and bacterial UDG repair activity with DNA-multifluorophore sensors.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 12, p. e127, doi. 10.1093/nar/gkt309

By:

Ono, Toshikazu;
Edwards, Sarah K.;
Wang, Shenliang;
Jiang, Wei;
Kool, Eric T.

Publication type:

Article

Massive functional mapping of a 5′-UTR by saturation mutagenesis, phenotypic sorting and deep sequencing.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 12, p. e122, doi. 10.1093/nar/gkt267

By:

Holmqvist, Erik;
Reimegård, Johan;
Wagner, E. Gerhart H.

Publication type:

Article

Progesterone receptor induces bcl-x expression through intragenic binding sites favoring RNA polymerase II elongation.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 12, p. 6072, doi. 10.1093/nar/gkt327

By:

Bertucci, Paola Y.;
Nacht, A. Silvina;
Alló, Mariano;
Rocha-Viegas, Luciana;
Ballaré, Cecilia;
Soronellas, Daniel;
Castellano, Giancarlo;
Zaurin, Roser;
Kornblihtt, Alberto R.;
Beato, Miguel;
Vicent, Guillermo P.;
Pecci, Adali

Publication type:

Article

Efficient Flp-Int HK022 dual RMCE in mammalian cells.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 12, p. e125, doi. 10.1093/nar/gkt341

By:

Voziyanova, Eugenia;
Malchin, Natalia;
Anderson, Rachelle P.;
Yagil, Ezra;
Kolot, Mikhail;
Voziyanov, Yuri

Publication type:

Article

A bistable hysteretic switch in an activator–repressor regulated restriction–modification system.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 12, p. 6045, doi. 10.1093/nar/gkt324

By:

Williams, Kristen;
Savageau, Michael A.;
Blumenthal, Robert M.

Publication type:

Article

New synthetic substrates of mammalian nucleotide excision repair system.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 12, p. e123, doi. 10.1093/nar/gkt301

By:

Evdokimov, Alexey;
Petruseva, Irina;
Tsidulko, Aleksandra;
Koroleva, Ludmila;
Serpokrylova, Inna;
Silnikov, Vladimir;
Lavrik, Olga

Publication type:

Article

Arabidopsis thaliana LSM proteins function in mRNA splicing and degradation.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 12, p. 6232, doi. 10.1093/nar/gkt296

By:

Golisz, Anna;
Sikorski, Pawel J.;
Kruszka, Katarzyna;
Kufel, Joanna

Publication type:

Article

Small molecule induced reactivation of mutant p53 in cancer cells.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 12, p. 6034, doi. 10.1093/nar/gkt305

By:

Liu, Xiangrui;
Wilcken, Rainer;
Joerger, Andreas C.;
Chuckowree, Irina S.;
Amin, Jahangir;
Spencer, John;
Fersht, Alan R.

Publication type:

Article

The DEAD-box helicase DDX3 substitutes for the cap-binding protein eIF4E to promote compartmentalized translation initiation of the HIV-1 genomic RNA.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 12, p. 6286, doi. 10.1093/nar/gkt306

By:

Soto-Rifo, Ricardo;
Rubilar, Paulina S.;
Ohlmann, Théophile

Publication type:

Article

Double-strand DNA end-binding and sliding of the toroidal CRISPR-associated protein Csn2.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 12, p. 6347, doi. 10.1093/nar/gkt315

By:

Arslan, Zihni;
Wurm, Reinhild;
Brener, Oleksandr;
Ellinger, Philipp;
Nagel-Steger, Luitgard;
Oesterhelt, Filipp;
Schmitt, Lutz;
Willbold, Dieter;
Wagner, Rolf;
Gohlke, Holger;
Smits, Sander H. J.;
Pul, Ümit

Publication type:

Article

Nucleic Acids Research.

Published in:: Nucleic Acids Research, 2013, v. 41, n. 12, p. i, doi. 10.1093/nar/gks1369
Publication type:: Article

APOBEC3G cytosine deamination hotspots are defined by both sequence context and single-stranded DNA secondary structure.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 12, p. 6139, doi. 10.1093/nar/gkt246

By:

Holtz, Colleen M.;
Sadler, Holly A.;
Mansky, Louis M.

Publication type:

Article

An efficient method for genome-wide polyadenylation site mapping and RNA quantification.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 12, p. 6370, doi. 10.1093/nar/gkt364

By:

Wilkening, Stefan;
Pelechano, Vicent;
Järvelin, Aino I.;
Tekkedil, Manu M.;
Anders, Simon;
Benes, Vladimir;
Steinmetz, Lars M.

Publication type:

Article

MYCN and HDAC2 cooperate to repress miR-183 signaling in neuroblastoma.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 12, p. 6018, doi. 10.1093/nar/gkt346

By:

Lodrini, Marco;
Oehme, Ina;
Schroeder, Christina;
Milde, Till;
Schier, Marie C.;
Kopp-Schneider, Annette;
Schulte, Johannes H.;
Fischer, Matthias;
De Preter, Katleen;
Pattyn, Filip;
Castoldi, Mirco;
Muckenthaler, Martina U.;
Kulozik, Andreas E.;
Westermann, Frank;
Witt, Olaf;
Deubzer, Hedwig E.

Publication type:

Article

Influence of genome-scale RNA structure disruption on the replication of murine norovirus—similar replication kinetics in cell culture but attenuation of viral fitness in vivo.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 12, p. 6316, doi. 10.1093/nar/gkt334

By:

McFadden, Nora;
Arias, Armando;
Dry, Inga;
Bailey, Dalan;
Witteveldt, Jeroen;
Evans, David J.;
Goodfellow, Ian;
Simmonds, Peter

Publication type:

Article

Megakaryocytic leukemia 1 (MKL1) ties the epigenetic machinery to hypoxia-induced transactivation of endothelin-1.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 12, p. 6005, doi. 10.1093/nar/gkt311

By:

Yang, Yuyu;
Chen, Dewei;
Yuan, Zhibin;
Fang, Fei;
Cheng, Xian;
Xia, Jun;
Fang, Mingming;
Xu, Yong;
Gao, Yuqi

Publication type:

Article

RNA-Seq analyses reveal the order of tRNA processing events and the maturation of C/D box and CRISPR RNAs in the hyperthermophile Methanopyrus kandleri.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 12, p. 6250, doi. 10.1093/nar/gkt317

By:

Su, Andreas A. H.;
Tripp, Vanessa;
Randau, Lennart

Publication type:

Article

Non-polyadenylated transcription in embryonic stem cells reveals novel non-coding RNA related to pluripotency and differentiation.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 12, p. 6300, doi. 10.1093/nar/gkt316

By:

Livyatan, Ilana;
Harikumar, Arigela;
Nissim-Rafinia, Malka;
Duttagupta, Radharani;
Gingeras, Thomas R.;
Meshorer, Eran

Publication type:

Article

Genome conformation capture reveals that the Escherichia coli chromosome is organized by replication and transcription.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 12, p. 6058, doi. 10.1093/nar/gkt325

By:

Cagliero, Cedric;
Grand, Ralph S.;
Jones, M. Beatrix;
Jin, Ding J.;
O’Sullivan, Justin M.

Publication type:

Article

Repression of class I transcription by cadmium is mediated by the protein phosphatase 2A.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 12, p. 6087, doi. 10.1093/nar/gkt335

By:

Zhou, Lei;
Le Roux, Gwenaëlle;
Ducrot, Cécile;
Chédin, Stéphane;
Labarre, Jean;
Riva, Michel;
Carles, Christophe

Publication type:

Article

Glucocorticoid-mediated Period2 induction delays the phase of circadian rhythm.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 12, p. 6161, doi. 10.1093/nar/gkt307

By:

Cheon, Solmi;
Park, Noheon;
Cho, Sehyung;
Kim, Kyungjin

Publication type:

Article

Clustered DNA damage induces pan-nuclear H2AX phosphorylation mediated by ATM and DNA–PK.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 12, p. 6109, doi. 10.1093/nar/gkt304

By:

Meyer, Barbara;
Voss, Kay-Obbe;
Tobias, Frank;
Jakob, Burkhard;
Durante, Marco;
Taucher-Scholz, Gisela

Publication type:

Article

Multi-chromatic control of mammalian gene expression and signaling.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 12, p. e124, doi. 10.1093/nar/gkt340

By:

Müller, Konrad;
Engesser, Raphael;
Schulz, Simon;
Steinberg, Thorsten;
Tomakidi, Pascal;
Weber, Cornelia C.;
Ulm, Roman;
Timmer, Jens;
Zurbriggen, Matias D.;
Weber, Wilfried

Publication type:

Article

Reconstitution and characterization of eukaryotic N6-threonylcarbamoylation of tRNA using a minimal enzyme system.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 12, p. 6332, doi. 10.1093/nar/gkt322

By:

Wan, Leo C. K.;
Mao, Daniel Y. L.;
Neculai, Dante;
Strecker, Jonathan;
Chiovitti, David;
Kurinov, Igor;
Poda, Gennadiy;
Thevakumaran, Neroshan;
Yuan, Fang;
Szilard, Rachel K.;
Lissina, Elena;
Nislow, Corey;
Caudy, Amy A.;
Durocher, Daniel;
Sicheri, Frank

Publication type:

Article

Recombineering in Corynebacterium glutamicum combined with optical nanosensors: a general strategy for fast producer strain generation.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 12, p. 6360, doi. 10.1093/nar/gkt312

By:

Binder, Stephan;
Siedler, Solvej;
Marienhagen, Jan;
Bott, Michael;
Eggeling, Lothar

Publication type:

Article

Reprever: resolving low-copy duplicated sequences using template driven assembly.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 12, p. e128, doi. 10.1093/nar/gkt339

By:

Kim, Sangwoo;
Medvedev, Paul;
Paton, Tara A.;
Bafna, Vineet

Publication type:

Article

RNAlyzer—novel approach for quality analysis of RNA structural models.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 12, p. 5978, doi. 10.1093/nar/gkt318

By:

Lukasiak, Piotr;
Antczak, Maciej;
Ratajczak, Tomasz;
Bujnicki, Janusz M.;
Szachniuk, Marta;
Adamiak, Ryszard W.;
Popenda, Mariusz;
Blazewicz, Jacek

Publication type:

Article

The 26S proteasome drives trinucleotide repeat expansions.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 12, p. 6098, doi. 10.1093/nar/gkt295

By:

Concannon, Claire;
Lahue, Robert S.

Publication type:

Article

Stability of RNA quadruplex in open reading frame determines proteolysis of human estrogen receptor α.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 12, p. 6222, doi. 10.1093/nar/gkt286

By:

Endoh, Tamaki;
Kawasaki, Yu;
Sugimoto, Naoki

Publication type:

Article

Microfluidic affinity and ChIP-seq analyses converge on a conserved FOXP2-binding motif in chimp and human, which enables the detection of evolutionarily novel targets.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 12, p. 5991, doi. 10.1093/nar/gkt259

By:

Nelson, Christopher S.;
Fuller, Chris K.;
Fordyce, Polly M.;
Greninger, Alexander L.;
Li, Hao;
DeRisi, Joseph L.

Publication type:

Article

The SMC1-SMC3 cohesin heterodimer structures DNA through supercoiling-dependent loop formation.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 12, p. 6149, doi. 10.1093/nar/gkt303

By:

Sun, Mingxuan;
Nishino, Tatsuya;
Marko, John F.

Publication type:

Article

The tRNA-modifying function of MnmE is controlled by post-hydrolysis steps of its GTPase cycle.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 12, p. 6190, doi. 10.1093/nar/gkt320

By:

Prado, Silvia;
Villarroya, Magda;
Medina, Milagros;
Armengod, M.-Eugenia

Publication type:

Article

The genome-wide distribution of non-B DNA motifs is shaped by operon structure and suggests the transcriptional importance of non-B DNA structures in Escherichia coli.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 12, p. 5965, doi. 10.1093/nar/gkt308

By:

Du, Xiangjun;
Wojtowicz, Damian;
Bowers, Albert A.;
Levens, David;
Benham, Craig J.;
Przytycka, Teresa M.

Publication type:

Article

Subscriptions.

Published in:: Nucleic Acids Research, 2013, v. 41, n. 12, p. iii, doi. 10.1093/nar/gks1417
Publication type:: Article

Nucleic Acids Research - Editorial Board.

Published in:: Nucleic Acids Research, 2013, v. 41, n. 12, p. ii, doi. 10.1093/nar/gks1393
Publication type:: Article