Works matching IS 03051048 AND DT 2013 AND VI 41 AND IP 9

Results: 43

A novel bifunctional histone protein in Streptomyces: a candidate for structural coupling between DNA conformation and transcription during development and stress?

Published in:

Nucleic Acids Research, 2013, v. 41, n. 9, p. 4813, doi. 10.1093/nar/gkt180

By:

Aldridge, Matthew;
Facey, Paul;
Francis, Lewis;
Bayliss, Sion;
Del Sol, Ricardo;
Dyson, Paul

Publication type:

Article

Reconstitution of recombination-associated DNA synthesis with human proteins.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 9, p. 4913, doi. 10.1093/nar/gkt192

By:

Sneeden, Jessica L.;
Grossi, Sara M.;
Tappin, Inger;
Hurwitz, Jerard;
Heyer, Wolf-Dietrich

Publication type:

Article

Leucine-specific domain modulates the aminoacylation and proofreading functional cycle of bacterial leucyl-tRNA synthetase.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 9, p. 4988, doi. 10.1093/nar/gkt185

By:

Yan, Wei;
Tan, Min;
Eriani, Gilbert;
Wang, En-Duo

Publication type:

Article

High-throughput identification of long-range regulatory elements and their target promoters in the human genome.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 9, p. 4835, doi. 10.1093/nar/gkt188

By:

Hwang, Yih-Chii;
Zheng, Qi;
Gregory, Brian D.;
Wang, Li-San

Publication type:

Article

Structural complexity of Dengue virus untranslated regions: cis-acting RNA motifs and pseudoknot interactions modulating functionality of the viral genome.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 9, p. 5075, doi. 10.1093/nar/gkt203

By:

Sztuba-Solinska, Joanna;
Teramoto, Tadahisa;
Rausch, Jason W.;
Shapiro, Bruce A.;
Padmanabhan, Radhakrishnan;
Le Grice, Stuart F. J.

Publication type:

Article

Subpathway-GM: identification of metabolic subpathways via joint power of interesting genes and metabolites and their topologies within pathways.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 9, p. e101, doi. 10.1093/nar/gkt161

By:

Li, Chunquan;
Han, Junwei;
Yao, Qianlan;
Zou, Chendan;
Xu, Yanjun;
Zhang, Chunlong;
Shang, Desi;
Zhou, Lingyun;
Zou, Chaoxia;
Sun, Zeguo;
Li, Jing;
Zhang, Yunpeng;
Yang, Haixiu;
Gao, Xu;
Li, Xia

Publication type:

Article

Site-selective probing of cTAR destabilization highlights the necessary plasticity of the HIV-1 nucleocapsid protein to chaperone the first strand transfer.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 9, p. 5036, doi. 10.1093/nar/gkt164

By:

Godet, Julien;
Kenfack, Cyril;
Przybilla, Frédéric;
Richert, Ludovic;
Duportail, Guy;
Mély, Yves

Publication type:

Article

Subscriptions.

Published in:: Nucleic Acids Research, 2013, v. 41, n. 9, p. iii, doi. 10.1093/nar/gks1435
Publication type:: Article

Impaired in vivo binding of MeCP2 to chromatin in the absence of its DNA methyl-binding domain.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 9, p. 4888, doi. 10.1093/nar/gkt213

By:

Stuss, David P.;
Cheema, Manjinder;
Ng, Marlee K.;
Martinez de Paz, Alexia;
Williamson, Brad;
Missiaen, Kristal;
Cosman, Joel D.;
McPhee, David;
Esteller, Manel;
Hendzel, Michael;
Delaney, Kerry;
Ausió, Juan

Publication type:

Article

Effects of post-transcriptional regulation on phenotypic noise in Escherichia coli.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 9, p. 4825, doi. 10.1093/nar/gkt184

By:

Arbel-Goren, Rinat;
Tal, Asaf;
Friedlander, Tamar;
Meshner, Shiri;
Costantino, Nina;
Court, Donald L.;
Stavans, Joel

Publication type:

Article

Real-time single-molecule imaging reveals a direct interaction between UvrC and UvrB on DNA tightropes.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 9, p. 4901, doi. 10.1093/nar/gkt177

By:

Hughes, Craig D.;
Wang, Hong;
Ghodke, Harshad;
Simons, Michelle;
Towheed, Atif;
Peng, Ye;
Van Houten, Bennett;
Kad, Neil M.

Publication type:

Article

Phosphorylation of the alternative mRNA splicing factor 45 (SPF45) by Clk1 regulates its splice site utilization, cell migration and invasion.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 9, p. 4949, doi. 10.1093/nar/gkt170

By:

Liu, Yuying;
Conaway, LaShardai;
Rutherford Bethard, Jennifer;
Al-Ayoubi, Adnan M.;
Thompson Bradley, Amber;
Zheng, Hui;
Weed, Scott A.;
Eblen, Scott T.

Publication type:

Article

Nucleic Acids Research.

Published in:: Nucleic Acids Research, 2013, v. 41, n. 9, p. i, doi. 10.1093/nar/gks1366
Publication type:: Article

Differentiation of developing olfactory neurons analysed in terms of coupled epigenetic landscapes.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 9, p. 4755, doi. 10.1093/nar/gkt181

By:

Alsing, Anne Katrine;
Sneppen, Kim

Publication type:

Article

Restriction endonuclease TseI cleaves A:A and T:T mismatches in CAG and CTG repeats.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 9, p. 4999, doi. 10.1093/nar/gkt176

By:

Ma, Long;
Chen, Kai;
Clarke, David J.;
Nortcliffe, Christopher P.;
Wilson, Geoffrey G.;
Edwardson, J. Michael;
Morton, A. Jennifer;
Jones, Anita C.;
Dryden, David T. F.

Publication type:

Article

Dissection of cell cycle–dependent dynamics of Dnmt1 by FRAP and diffusion-coupled modeling.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 9, p. 4860, doi. 10.1093/nar/gkt191

By:

Schneider, Katrin;
Fuchs, Christiane;
Dobay, Akos;
Rottach, Andrea;
Qin, Weihua;
Wolf, Patricia;
Álvarez-Castro, José M.;
Nalaskowski, Marcus M.;
Kremmer, Elisabeth;
Schmid, Volker;
Leonhardt, Heinrich;
Schermelleh, Lothar

Publication type:

Article

Measurement and modeling of intrinsic transcription terminators.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 9, p. 5139, doi. 10.1093/nar/gkt163

By:

Cambray, Guillaume;
Guimaraes, Joao C.;
Mutalik, Vivek K.;
Lam, Colin;
Mai, Quynh-Anh;
Thimmaiah, Tim;
Carothers, James M.;
Arkin, Adam P.;
Endy, Drew

Publication type:

Article

A rapid and sensitive assay for DNA–protein covalent complexes in living cells.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 9, p. e104, doi. 10.1093/nar/gkt171

By:

Kiianitsa, Kostantin;
Maizels, Nancy

Publication type:

Article

Nucleic Acids Research - Editorial Board.

Published in:: Nucleic Acids Research, 2013, v. 41, n. 9, p. ii, doi. 10.1093/nar/gks1411
Publication type:: Article

A scale-space method for detecting recurrent DNA copy number changes with analytical false discovery rate control.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 9, p. e100, doi. 10.1093/nar/gkt155

By:

van Dyk, Ewald;
Reinders, Marcel J.T.;
Wessels, Lodewyk F.A.

Publication type:

Article

MBNL1 and PTB cooperate to repress splicing of Tpm1 exon 3.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 9, p. 4765, doi. 10.1093/nar/gkt168

By:

Gooding, Clare;
Edge, Christopher;
Lorenz, Mike;
Coelho, Miguel B.;
Winters, Mikael;
Kaminski, Clemens F.;
Cherny, Dmitry;
Eperon, Ian C.;
Smith, Christopher W.J.

Publication type:

Article

Neisseria conserved hypothetical protein DMP12 is a DNA mimic that binds to histone-like HU protein.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 9, p. 5127, doi. 10.1093/nar/gkt201

By:

Wang, Hao-Ching;
Wu, Mao-Lun;
Ko, Tzu-Ping;
Wang, Andrew H.-J.

Publication type:

Article

Translating mRNAs strongly correlate to proteins in a multivariate manner and their translation ratios are phenotype specific.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 9, p. 4743, doi. 10.1093/nar/gkt178

By:

Wang, Tong;
Cui, Yizhi;
Jin, Jingjie;
Guo, Jiahui;
Wang, Guibin;
Yin, Xingfeng;
He, Qing-Yu;
Zhang, Gong

Publication type:

Article

Comparative analysis using K-mer and K-flank patterns provides evidence for CpG island sequence evolution in mammalian genomes.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 9, p. 4783, doi. 10.1093/nar/gkt144

By:

Chae, Heejoon;
Park, Jinwoo;
Lee, Seong-Whan;
Nephew, Kenneth P.;
Kim, Sun

Publication type:

Article

CoFold: an RNA secondary structure prediction method that takes co-transcriptional folding into account.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 9, p. e102, doi. 10.1093/nar/gkt174

By:

Proctor, Jeff R.;
Meyer, Irmtraud M.

Publication type:

Article

Human polymerase kappa uses a template-slippage deletion mechanism, but can realign the slipped strands to favour base substitution mutations over deletions.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 9, p. 5024, doi. 10.1093/nar/gkt179

By:

Mukherjee, Purba;
Lahiri, Indrajit;
Pata, Janice D.

Publication type:

Article

Spanning high-dimensional expression space using ribosome-binding site combinatorics.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 9, p. e98, doi. 10.1093/nar/gkt151

By:

Zelcbuch, Lior;
Antonovsky, Niv;
Bar-Even, Arren;
Levin-Karp, Ayelet;
Barenholz, Uri;
Dayagi, Michal;
Liebermeister, Wolfram;
Flamholz, Avi;
Noor, Elad;
Amram, Shira;
Brandis, Alexander;
Bareia, Tasneem;
Yofe, Ido;
Jubran, Halim;
Milo, Ron

Publication type:

Article

The adenovirus VA RNA-derived miRNAs are not essential for lytic virus growth in tissue culture cells.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 9, p. 4802, doi. 10.1093/nar/gkt172

By:

Kamel, Wael;
Segerman, Bo;
Öberg, Daniel;
Punga, Tanel;
Akusjärvi, Göran

Publication type:

Article

GATA-1 genome-wide occupancy associates with distinct epigenetic profiles in mouse fetal liver erythropoiesis.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 9, p. 4938, doi. 10.1093/nar/gkt167

By:

Papadopoulos, Giorgio L.;
Karkoulia, Elena;
Tsamardinos, Ioannis;
Porcher, Catherine;
Ragoussis, Jiannis;
Bungert, Jörg;
Strouboulis, John

Publication type:

Article

The heterochromatic chromosome caps in great apes impact telomere metabolism.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 9, p. 4792, doi. 10.1093/nar/gkt169

By:

Novo, Clara;
Arnoult, Nausica;
Bordes, Win-Yan;
Castro-Vega, Luis;
Gibaud, Anne;
Dutrillaux, Bernard;
Bacchetti, Silvia;
Londoño-Vallejo, Arturo

Publication type:

Article

Distinctive contributions of the ribosomal P-site elements m2G966, m5C967 and the C-terminal tail of the S9 protein in the fidelity of initiation of translation in Escherichia coli.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 9, p. 4963, doi. 10.1093/nar/gkt175

By:

Arora, Smriti;
Bhamidimarri, Satya Prathyusha;
Bhattacharyya, Moitrayee;
Govindan, Ashwin;
Weber, Michael H. W.;
Vishveshwara, Saraswathi;
Varshney, Umesh

Publication type:

Article

A strategically located serine residue is critical for the mutator activity of DNA polymerase IV from Escherichia coli.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 9, p. 5104, doi. 10.1093/nar/gkt146

By:

Sharma, Amit;
Kottur, Jithesh;
Narayanan, Naveen;
Nair, Deepak T.

Publication type:

Article

Kinesin KIFC1 actively transports bare double-stranded DNA.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 9, p. 4926, doi. 10.1093/nar/gkt204

By:

Farina, Francesca;
Pierobon, Paolo;
Delevoye, Cédric;
Monnet, Jordan;
Dingli, Florent;
Loew, Damarys;
Quanz, Maria;
Dutreix, Marie;
Cappello, Giovanni

Publication type:

Article

The effect of hybridization-induced secondary structure alterations on RNA detection using backscattering interferometry.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 9, p. e103, doi. 10.1093/nar/gkt165

By:

Adams, Nicholas M.;
Olmsted, Ian R.;
Haselton, Frederick R.;
Bornhop, Darryl J.;
Wright, David W.

Publication type:

Article

Insights into the structure and assembly of the Bacillus subtilis clamp-loader complex and its interaction with the replicative helicase.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 9, p. 5115, doi. 10.1093/nar/gkt173

By:

Afonso, José P.;
Chintakayala, Kiran;
Suwannachart, Chatrudee;
Sedelnikova, Svetlana;
Giles, Kevin;
Hoyes, John B.;
Soultanas, Panos;
Rafferty, John B.;
Oldham, Neil J.

Publication type:

Article

Monomeric PcrA helicase processively unwinds plasmid lengths of DNA in the presence of the initiator protein RepD.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 9, p. 5010, doi. 10.1093/nar/gkt194

By:

Chisty, Liisa T.;
Toseland, Christopher P.;
Fili, Natalia;
Mashanov, Gregory I.;
Dillingham, Mark S.;
Molloy, Justin E.;
Webb, Martin R.

Publication type:

Article

Characterizing TDP-43 interaction with its RNA targets.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 9, p. 5062, doi. 10.1093/nar/gkt189

By:

Bhardwaj, Amit;
Myers, Michael P.;
Buratti, Emanuele;
Baralle, Francisco E.

Publication type:

Article

Harnessing mutagenic homologous recombination for targeted mutagenesis in vivo by TaGTEAM.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 9, p. e99, doi. 10.1093/nar/gkt150

By:

Finney-Manchester, Shawn P.;
Maheshri, Narendra

Publication type:

Article

All three RNA recognition motifs and the hinge region of HuC play distinct roles in the regulation of alternative splicing.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 9, p. 5049, doi. 10.1093/nar/gkt166

By:

Hinman, Melissa N.;
Zhou, Hua-Lin;
Sharma, Alok;
Lou, Hua

Publication type:

Article

The Mediator complex subunit MED25 is targeted by the N-terminal transactivation domain of the PEA3 group members.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 9, p. 4847, doi. 10.1093/nar/gkt199

By:

Verger, Alexis;
Baert, Jean-Luc;
Verreman, Kathye;
Dewitte, Frédérique;
Ferreira, Elisabeth;
Lens, Zoé;
de Launoit, Yvan;
Villeret, Vincent;
Monté, Didier

Publication type:

Article

AGO/RISC-mediated antiviral RNA silencing in a plant in vitro system.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 9, p. 5090, doi. 10.1093/nar/gkt193

By:

Schuck, Jana;
Gursinsky, Torsten;
Pantaleo, Vitantonio;
Burgyán, Jozsef;
Behrens, Sven-Erik

Publication type:

Article

Differential binding of the related transcription factors Pho4 and Cbf1 can tune the sensitivity of promoters to different levels of an induction signal.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 9, p. 4877, doi. 10.1093/nar/gkt210

By:

Aow, Jonathan S. Z.;
Xue, Xiaowei;
Run, Jin-Quan;
Lim, Geoffrey F. S.;
Goh, Wee Siong;
Clarke, Neil D.

Publication type:

Article

LncRNA loc285194 is a p53-regulated tumor suppressor.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 9, p. 4976, doi. 10.1093/nar/gkt182

By:

Liu, Qian;
Huang, Jianguo;
Zhou, Nanjiang;
Zhang, Ziqiang;
Zhang, Ali;
Lu, Zhaohui;
Wu, Fangting;
Mo, Yin-Yuan

Publication type:

Article