Works matching IS 03051048 AND DT 2013 AND VI 41 AND IP 7

Results: 49

Stability, delivery and functions of human sperm RNAs at fertilization.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 7, p. 4104, doi. 10.1093/nar/gkt132

By:

Sendler, Edward;
Johnson, Graham D.;
Mao, Shihong;
Goodrich, Robert J.;
Diamond, Michael P.;
Hauser, Russ;
Krawetz, Stephen A.

Publication type:

Article

An empirical Bayesian framework for somatic mutation detection from cancer genome sequencing data.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 7, p. e89, doi. 10.1093/nar/gkt126

By:

Shiraishi, Yuichi;
Sato, Yusuke;
Chiba, Kenichi;
Okuno, Yusuke;
Nagata, Yasunobu;
Yoshida, Kenichi;
Shiba, Norio;
Hayashi, Yasuhide;
Kume, Haruki;
Homma, Yukio;
Sanada, Masashi;
Ogawa, Seishi;
Miyano, Satoru

Publication type:

Article

Modulation of gene expression via overlapping binding sites exerted by ZNF143, Notch1 and THAP11.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 7, p. 4000, doi. 10.1093/nar/gkt088

By:

Ngondo-Mbongo, Richard Patryk;
Myslinski, Evelyne;
Aster, Jon C.;
Carbon, Philippe

Publication type:

Article

Probing the activity of diguanylate cyclases and c-di-GMP phosphodiesterases in real-time by CD spectroscopy.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 7, p. e79, doi. 10.1093/nar/gkt028

By:

Stelitano, Valentina;
Brandt, Annegret;
Fernicola, Silvia;
Franceschini, Stefano;
Giardina, Giorgio;
Pica, Andrea;
Rinaldo, Serena;
Sica, Filomena;
Cutruzzolà, Francesca

Publication type:

Article

A red/far-red light-responsive bi-stable toggle switch to control gene expression in mammalian cells.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 7, p. e77, doi. 10.1093/nar/gkt002

By:

Müller, Konrad;
Engesser, Raphael;
Metzger, Stéphanie;
Schulz, Simon;
Kämpf, Michael M.;
Busacker, Moritz;
Steinberg, Thorsten;
Tomakidi, Pascal;
Ehrbar, Martin;
Nagy, Ferenc;
Timmer, Jens;
Zubriggen, Matias D.;
Weber, Wilfried

Publication type:

Article

Specific recognition and stabilization of monomeric and multimeric G-quadruplexes by cationic porphyrin TMPipEOPP under molecular crowding conditions.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 7, p. 4324, doi. 10.1093/nar/gkt103

By:

Zhu, Li-Na;
Wu, Bin;
Kong, De-Ming

Publication type:

Article

Unconventional miR-122 binding stabilizes the HCV genome by forming a trimolecular RNA structure.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 7, p. 4230, doi. 10.1093/nar/gkt075

By:

Mortimer, Stefanie A.;
Doudna, Jennifer A.

Publication type:

Article

The crystal structure of the DNA-binding domain of vIRF-1 from the oncogenic KSHV reveals a conserved fold for DNA binding and reinforces its role as a transcription factor.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 7, p. 4295, doi. 10.1093/nar/gkt082

By:

Hew, Kelly;
Dahlroth, Sue-Li;
Venkatachalam, Rajakannan;
Nasertorabi, Fariborz;
Lim, Bee Ting;
Cornvik, Tobias;
Nordlund, Pär

Publication type:

Article

The structural basis of actinomycin D–binding induces nucleotide flipping out, a sharp bend and a left-handed twist in CGG triplet repeats.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 7, p. 4284, doi. 10.1093/nar/gkt084

By:

Lo, Yu-Sheng;
Tseng, Wen-Hsuan;
Chuang, Chien-Ying;
Hou, Ming-Hon

Publication type:

Article

Characterization of the 5-hydroxymethylcytosine-specific DNA restriction endonucleases.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 7, p. 4198, doi. 10.1093/nar/gkt102

By:

Borgaro, Janine G.;
Zhu, Zhenyu

Publication type:

Article

Subscriptions.

Published in:: Nucleic Acids Research, 2013, v. 41, n. 7, p. iii, doi. 10.1093/nar/gks1433
Publication type:: Article

Position-dependent and neuron-specific splicing regulation by the CELF family RNA-binding protein UNC-75 in Caenorhabditis elegans.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 7, p. 4015, doi. 10.1093/nar/gkt097

By:

Kuroyanagi, Hidehito;
Watanabe, Yohei;
Suzuki, Yutaka;
Hagiwara, Masatoshi

Publication type:

Article

Efficient identification of rare variants in large populations: deep re-sequencing the CRP locus in the CARDIA study.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 7, p. e85, doi. 10.1093/nar/gkt092

By:

Chen, Christina T. L.;
McDavid, Andrew N.;
Kahsai, Orsalem J.;
Zebari, Ahmad S.;
Carlson, Christopher S.

Publication type:

Article

Fast and accurate read mapping with approximate seeds and multiple backtracking.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 7, p. e78, doi. 10.1093/nar/gkt005

By:

Siragusa, Enrico;
Weese, David;
Reinert, Knut

Publication type:

Article

Novel inhibition of archaeal family-D DNA polymerase by uracil.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 7, p. 4207, doi. 10.1093/nar/gkt083

By:

Richardson, Tomas T.;
Gilroy, Louise;
Ishino, Yoshizumi;
Connolly, Bernard A.;
Henneke, Ghislaine

Publication type:

Article

Co-phylog: an assembly-free phylogenomic approach for closely related organisms.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 7, p. e75, doi. 10.1093/nar/gkt003

By:

Yi, Huiguang;
Jin, Li

Publication type:

Article

The PARP3- and ATM-dependent phosphorylation of APLF facilitates DNA double-strand break repair.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 7, p. 4080, doi. 10.1093/nar/gkt134

By:

Fenton, Amanda L.;
Shirodkar, Purnata;
Macrae, Chloe J.;
Meng, Li;
Koch, C. Anne

Publication type:

Article

Co-segregation of yeast plasmid sisters under monopolin-directed mitosis suggests association of plasmid sisters with sister chromatids.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 7, p. 4144, doi. 10.1093/nar/gkt096

By:

Liu, Yen-Ting;
Ma, Chien-Hui;
Jayaram, Makkuni

Publication type:

Article

Linker histone H1.0 interacts with an extensive network of proteins found in the nucleolus.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 7, p. 4026, doi. 10.1093/nar/gkt104

By:

Kalashnikova, Anna A.;
Winkler, Duane D.;
McBryant, Steven J.;
Henderson, Ryan K.;
Herman, Jacob A.;
DeLuca, Jennifer G.;
Luger, Karolin;
Prenni, Jessica E.;
Hansen, Jeffrey C.

Publication type:

Article

CDX2 regulation by the RNA-binding protein MEX3A: impact on intestinal differentiation and stemness.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 7, p. 3986, doi. 10.1093/nar/gkt087

By:

Pereira, Bruno;
Sousa, Sofia;
Barros, Rita;
Carreto, Laura;
Oliveira, Patrícia;
Oliveira, Carla;
Chartier, Nicolas T.;
Plateroti, Michelina;
Rouault, Jean-Pierre;
Freund, Jean-Noël;
Billaud, Marc;
Almeida, Raquel

Publication type:

Article

High-resolution nucleosome mapping of targeted regions using BAC-based enrichment.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 7, p. e87, doi. 10.1093/nar/gkt081

By:

Yigit, Erbay;
Zhang, Quanwei;
Xi, Liqun;
Grilley, Dan;
Widom, Jonathan;
Wang, Ji-Ping;
Rao, Anjana;
Pipkin, Matthew E.

Publication type:

Article

CompaRNA: a server for continuous benchmarking of automated methods for RNA secondary structure prediction.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 7, p. 4307, doi. 10.1093/nar/gkt101

By:

Puton, Tomasz;
Kozlowski, Lukasz P.;
Rother, Kristian M.;
Bujnicki, Janusz M.

Publication type:

Article

Switching from single-stranded to double-stranded DNA limits the unwinding processivity of ring-shaped T7 DNA helicase.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 7, p. 4219, doi. 10.1093/nar/gkt133

By:

Jeong, Yong-Joo;
Rajagopal, Vaishnavi;
Patel, Smita S.

Publication type:

Article

Ensuring the statistical soundness of competitive gene set approaches: gene filtering and genome-scale coverage are essential.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 7, p. e82, doi. 10.1093/nar/gkt054

By:

Tripathi, Shailesh;
Glazko, Galina V.;
Emmert-Streib, Frank

Publication type:

Article

Active regulator of SIRT1 is required for ribosome biogenesis and function.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 7, p. 4185, doi. 10.1093/nar/gkt129

By:

Knight, John R. P.;
Willis, Anne E.;
Milner, Jo

Publication type:

Article

Expanding probe repertoire and improving reproducibility in human genomic hybridization.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 7, p. e81, doi. 10.1093/nar/gkt048

By:

Dorman, Stephanie N.;
Shirley, Ben C.;
Knoll, Joan H. M.;
Rogan, Peter K.

Publication type:

Article

Nucleic Acids Research - Editorial Board.

Published in:: Nucleic Acids Research, 2013, v. 41, n. 7, p. ii, doi. 10.1093/nar/gks1409
Publication type:: Article

Genome engineering in Saccharomyces cerevisiae using CRISPR-Cas systems.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 7, p. 4336, doi. 10.1093/nar/gkt135

By:

DiCarlo, James E.;
Norville, Julie E.;
Mali, Prashant;
Rios, Xavier;
Aach, John;
Church, George M.

Publication type:

Article

Low-level processing of Illumina Infinium DNA Methylation BeadArrays.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 7, p. e90, doi. 10.1093/nar/gkt090

By:

Triche, Timothy J.;
Weisenberger, Daniel J.;
Van Den Berg, David;
Laird, Peter W.;
Siegmund, Kimberly D.

Publication type:

Article

A novel nucleoid-associated protein specific to the actinobacteria.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 7, p. 4171, doi. 10.1093/nar/gkt095

By:

Swiercz, Julia P.;
Nanji, Tamiza;
Gloyd, Melanie;
Guarné, Alba;
Elliot, Marie A.

Publication type:

Article

Genome-wide comparison of DNA hydroxymethylation in mouse embryonic stem cells and neural progenitor cells by a new comparative hMeDIP-seq method.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 7, p. e84, doi. 10.1093/nar/gkt091

By:

Tan, Li;
Xiong, Lijun;
Xu, Wenqi;
Wu, Feizhen;
Huang, Ning;
Xu, Yufei;
Kong, Lingchun;
Zheng, Lijuan;
Schwartz, Lisa;
Shi, Yang;
Shi, Yujiang Geno

Publication type:

Article

Nucleic Acids Research.

Published in:: Nucleic Acids Research, 2013, v. 41, n. 7, p. i, doi. 10.1093/nar/gks1366
Publication type:: Article

Coactivators enable glucocorticoid receptor recruitment to fine-tune estrogen receptor transcriptional responses.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 7, p. 4036, doi. 10.1093/nar/gkt100

By:

Bolt, Michael J.;
Stossi, Fabio;
Newberg, Justin Y.;
Orjalo, Arturo;
Johansson, Hans E.;
Mancini, Michael A.

Publication type:

Article

Resolving the polymorphism-in-probe problem is critical for correct interpretation of expression QTL studies.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 7, p. e88, doi. 10.1093/nar/gkt069

By:

Ramasamy, Adaikalavan;
Trabzuni, Daniah;
Gibbs, J. Raphael;
Dillman, Allissa;
Hernandez, Dena G.;
Arepalli, Sampath;
Walker, Robert;
Smith, Colin;
Ilori, Gigaloluwa Peter;
Shabalin, Andrey A.;
Li, Yun;
Singleton, Andrew B.;
Cookson, Mark R.;
Hardy, John;
Ryten, Mina;
Weale, Michael E.

Publication type:

Article

Combination of fluorescence color and melting temperature as a two-dimensional label for homogeneous multiplex PCR detection.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 7, p. e76, doi. 10.1093/nar/gkt004

By:

Liao, Yiqun;
Wang, Xiaobo;
Sha, Chao;
Xia, Zhongmin;
Huang, Qiuying;
Li, Qingge

Publication type:

Article

Dual functional BAFF receptor aptamers inhibit ligand-induced proliferation and deliver siRNAs to NHL cells.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 7, p. 4266, doi. 10.1093/nar/gkt125

By:

Zhou, Jiehua;
Tiemann, Katrin;
Chomchan, Pritsana;
Alluin, Jessica;
Swiderski, Piotr;
Burnett, John;
Zhang, Xizhe;
Forman, Stephen;
Chen, Robert;
Rossi, John

Publication type:

Article

TriageTools: tools for partitioning and prioritizing analysis of high-throughput sequencing data.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 7, p. e86, doi. 10.1093/nar/gkt094

By:

Fimereli, Danai;
Detours, Vincent;
Konopka, Tomasz

Publication type:

Article

The RNA-binding region of human TRBP interacts with microRNA precursors through two independent domains.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 7, p. 4241, doi. 10.1093/nar/gkt086

By:

Benoit, Matthieu P. M. H.;
Imbert, Lionel;
Palencia, Andrés;
Pérard, Julien;
Ebel, Christine;
Boisbouvier, Jérôme;
Plevin, Michael J.

Publication type:

Article

Understanding the role of the Q338H MUTYH variant in oxidative damage repair.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 7, p. 4093, doi. 10.1093/nar/gkt130

By:

Turco, Eleonora;
Ventura, Ilenia;
Minoprio, Anna;
Russo, Maria Teresa;
Torreri, Paola;
Degan, Paolo;
Molatore, Sara;
Ranzani, Guglielmina Nadia;
Bignami, Margherita;
Mazzei, Filomena

Publication type:

Article

Efficient self-assembly of DNA-functionalized fluorophores and gold nanoparticles with DNA functionalized silicon surfaces: the effect of oligomer spacers.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 7, p. e80, doi. 10.1093/nar/gkt031

By:

Milton, James A.;
Patole, Samson;
Yin, Huabing;
Xiao, Qiang;
Brown, Tom;
Melvin, Tracy

Publication type:

Article

DNA-recognition process described by MD simulations of the lactose repressor protein on a specific and a non-specific DNA sequence.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 7, p. 3963, doi. 10.1093/nar/gkt099

By:

Furini, Simone;
Barbini, Paolo;
Domene, Carmen

Publication type:

Article

Translational repression of thymidylate synthase by targeting its mRNA.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 7, p. 4159, doi. 10.1093/nar/gkt098

By:

Garg, Divita;
Beribisky, Alexander V.;
Ponterini, Glauco;
Ligabue, Alessio;
Marverti, Gaetano;
Martello, Andrea;
Costi, M. Paola;
Sattler, Michael;
Wade, Rebecca C.

Publication type:

Article

Single-molecule chemical denaturation of riboswitches.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 7, p. 4253, doi. 10.1093/nar/gkt128

By:

Dalgarno, Paul A.;
Bordello, Jorge;
Morris, Rhodri;
St-Pierre, Patrick;
Dubé, Audrey;
Samuel, Ifor D. W.;
Lafontaine, Daniel A.;
Penedo, J. Carlos

Publication type:

Article

Human SIRT1 regulates DNA binding and stability of the Mcm10 DNA replication factor via deacetylation.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 7, p. 4065, doi. 10.1093/nar/gkt131

By:

Fatoba, Samuel T.;
Tognetti, Silvia;
Berto, Melissa;
Leo, Elisabetta;
Mulvey, Claire M.;
Godovac-Zimmermann, Jasminka;
Pommier, Yves;
Okorokov, Andrei L.

Publication type:

Article

A comprehensive analysis of GATA-1-regulated miRNAs reveals miR-23a to be a positive modulator of erythropoiesis.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 7, p. 4129, doi. 10.1093/nar/gkt093

By:

Zhu, Yong;
Wang, Dongsheng;
Wang, Fang;
Li, Tingting;
Dong, Lei;
Liu, Huiwen;
Ma, Yanni;
Jiang, Fengbing;
Yin, Haixin;
Yan, Wenting;
Luo, Min;
Tang, Zhong;
Zhang, Guoyuan;
Wang, Qiang;
Zhang, Junwu;
Zhou, Jingguo;
Yu, Jia

Publication type:

Article

Site- and strand-specific nicking of DNA by fusion proteins derived from MutH and I-SceI or TALE repeats.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 7, p. e83, doi. 10.1093/nar/gkt080

By:

Gabsalilow, Lilia;
Schierling, Benno;
Friedhoff, Peter;
Pingoud, Alfred;
Wende, Wolfgang

Publication type:

Article

Functional DNA demethylation is accompanied by chromatin accessibility.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 7, p. 3973, doi. 10.1093/nar/gkt077

By:

Pandiyan, Kurinji;
You, Jueng Soo;
Yang, Xiaojing;
Dai, Chao;
Zhou, Xianghong J.;
Baylin, Stephen B.;
Jones, Peter A.;
Liang, Gangning

Publication type:

Article

Quantitative analysis of TALE–DNA interactions suggests polarity effects.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 7, p. 4118, doi. 10.1093/nar/gkt085

By:

Meckler, Joshua F.;
Bhakta, Mital S.;
Kim, Moon-Soo;
Ovadia, Robert;
Habrian, Chris H.;
Zykovich, Artem;
Yu, Abigail;
Lockwood, Sarah H.;
Morbitzer, Robert;
Elsäesser, Janett;
Lahaye, Thomas;
Segal, David J.;
Baldwin, Enoch P.

Publication type:

Article

MAZ-binding G4-decoy with locked nucleic acid and twisted intercalating nucleic acid modifications suppresses KRAS in pancreatic cancer cells and delays tumor growth in mice.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 7, p. 4049, doi. 10.1093/nar/gkt127

By:

Cogoi, Susanna;
Zorzet, Sonia;
Rapozzi, Valentina;
Géci, Imrich;
Pedersen, Erik B.;
Xodo, Luigi E.

Publication type:

Article