Works matching IS 03051048 AND DT 2013 AND VI 41 AND IP 6

Results: 49

A comprehensive approach to zinc-finger recombinase customization enables genomic targeting in human cells.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 6, p. 3937, doi. 10.1093/nar/gkt071

By:

Gaj, Thomas;
Mercer, Andrew C.;
Sirk, Shannon J.;
Smith, Heather L.;
Barbas, Carlos F.

Publication type:

Article

Pyrvinium pamoate changes alternative splicing of the serotonin receptor 2C by influencing its RNA structure.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 6, p. 3819, doi. 10.1093/nar/gkt063

By:

Shen, Manli;
Bellaousov, Stanislav;
Hiller, Michael;
de La Grange, Pierre;
Creamer, Trevor P.;
Malina, Orit;
Sperling, Ruth;
Mathews, David H.;
Stoilov, Peter;
Stamm, Stefan

Publication type:

Article

Isolation and identification of cell-specific microRNAs targeting a messenger RNA using a biotinylated anti-sense oligonucleotide capture affinity technique.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 6, p. e71, doi. 10.1093/nar/gks1466

By:

Hassan, Tidi;
Smith, Stephen G. J.;
Gaughan, Kevin;
Oglesby, Irene K.;
O’Neill, Shane;
McElvaney, Noel G.;
Greene, Catherine M.

Publication type:

Article

An in vitro-selected RNA receptor for the GAAC loop: modular receptor for non–GNRA-type tetraloop.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 6, p. 3748, doi. 10.1093/nar/gkt040

By:

Ishikawa, Junya;
Furuta, Hiroyuki;
Ikawa, Yoshiya

Publication type:

Article

Acetylated Histone H3K9 is associated with meiotic recombination hotspots, and plays a role in recombination redundantly with other factors including the H3K4 methylase Set1 in fission yeast.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 6, p. 3504, doi. 10.1093/nar/gkt049

By:

Yamada, Shintaro;
Ohta, Kunihiro;
Yamada, Takatomi

Publication type:

Article

U2AF65 adapts to diverse pre-mRNA splice sites through conformational selection of specific and promiscuous RNA recognition motifs.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 6, p. 3859, doi. 10.1093/nar/gkt046

By:

Jenkins, Jermaine L.;
Agrawal, Anant A.;
Gupta, Ankit;
Green, Michael R.;
Kielkopf, Clara L.

Publication type:

Article

MiR-10a* up-regulates coxsackievirus B3 biosynthesis by targeting the 3D-coding sequence.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 6, p. 3760, doi. 10.1093/nar/gkt058

By:

Tong, Lei;
Lin, Lexun;
Wu, Shuo;
Guo, Zhiwei;
Wang, Tianying;
Qin, Ying;
Wang, Ruixue;
Zhong, Xiaoyan;
Wu, Xia;
Wang, Yan;
Luan, Tian;
Wang, Qiang;
Li, Yunxia;
Chen, Xiaofeng;
Zhang, Fengmin;
Zhao, Wenran;
Zhong, Zhaohua

Publication type:

Article

mRNA secondary structure optimization using a correlated stem–loop prediction.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 6, p. e73, doi. 10.1093/nar/gks1473

By:

Gaspar, Paulo;
Moura, Gabriela;
Santos, Manuel A. S.;
Oliveira, José Luís

Publication type:

Article

The RNA exosome complex central channel controls both exonuclease and endonuclease Dis3 activities in vivo and in vitro.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 6, p. 3845

By:

Drążkowska, Karolina;
Tomecki, Rafał;
Stoduś, Krystian;
Kowalska, Katarzyna;
Czarnocki-Cieciura, Mariusz;
Dziembowski, Andrzej

Publication type:

Article

The anti-genomic (negative) strand of Hepatitis C Virus is not targetable by shRNA.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 6, p. 3688, doi. 10.1093/nar/gkt068

By:

Lisowski, Leszek;
Elazar, Menashe;
Chu, Kirk;
Glenn, Jeffrey S.;
Kay, Mark A.

Publication type:

Article

Mechanism of promoter repression by Lac repressor–DNA loops.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 6, p. 3962, doi. 10.1093/nar/gkt089

By:

Becker, Nicole A.;
Peters, Justin P.;
Maher, L. James

Publication type:

Article

miR-375 regulates rat alveolar epithelial cell trans-differentiation by inhibiting Wnt/β-catenin pathway.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 6, p. 3833, doi. 10.1093/nar/gks1460

By:

Wang, Yang;
Huang, Chaoqun;
Reddy Chintagari, Narendranath;
Bhaskaran, Manoj;
Weng, Tingting;
Guo, Yujie;
Xiao, Xiao;
Liu, Lin

Publication type:

Article

Discovery and characterization of artifactual mutations in deep coverage targeted capture sequencing data due to oxidative DNA damage during sample preparation.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 6, p. e67, doi. 10.1093/nar/gks1443

By:

Costello, Maura;
Pugh, Trevor J.;
Fennell, Timothy J.;
Stewart, Chip;
Lichtenstein, Lee;
Meldrim, James C.;
Fostel, Jennifer L.;
Friedrich, Dennis C.;
Perrin, Danielle;
Dionne, Danielle;
Kim, Sharon;
Gabriel, Stacey B.;
Lander, Eric S.;
Fisher, Sheila;
Getz, Gad

Publication type:

Article

Highly conserved elements discovered in vertebrates are present in non-syntenic loci of tunicates, act as enhancers and can be transcribed during development.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 6, p. 3600, doi. 10.1093/nar/gkt030

By:

Sanges, Remo;
Hadzhiev, Yavor;
Gueroult-Bellone, Marion;
Roure, Agnes;
Ferg, Marco;
Meola, Nicola;
Amore, Gabriele;
Basu, Swaraj;
Brown, Euan R.;
De Simone, Marco;
Petrera, Francesca;
Licastro, Danilo;
Strähle, Uwe;
Banfi, Sandro;
Lemaire, Patrick;
Birney, Ewan;
Müller, Ferenc;
Stupka, Elia

Publication type:

Article

A transcriptional regulator linking quorum sensing and chitin induction to render Vibrio cholerae naturally transformable.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 6, p. 3644, doi. 10.1093/nar/gkt041

By:

Lo Scrudato, Mirella;
Blokesch, Melanie

Publication type:

Article

CPAT: Coding-Potential Assessment Tool using an alignment-free logistic regression model.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 6, p. e74, doi. 10.1093/nar/gkt006

By:

Wang, Liguo;
Park, Hyun Jung;
Dasari, Surendra;
Wang, Shengqin;
Kocher, Jean-Pierre;
Li, Wei

Publication type:

Article

Human G-proteins, ObgH1 and Mtg1, associate with the large mitochondrial ribosome subunit and are involved in translation and assembly of respiratory complexes.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 6, p. 3713, doi. 10.1093/nar/gkt079

By:

Kotani, Tetsuya;
Akabane, Shiori;
Takeyasu, Kunio;
Ueda, Takuya;
Takeuchi, Nono

Publication type:

Article

Structure–function relationships of two paralogous single-stranded DNA-binding proteins from Streptomyces coelicolor: implication of SsbB in chromosome segregation during sporulation.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 6, p. 3659, doi. 10.1093/nar/gkt050

By:

Paradzik, Tina;
Ivic, Nives;
Filic, Zelimira;
Manjasetty, Babu A.;
Herron, Paul;
Luic, Marija;
Vujaklija, Dusica

Publication type:

Article

Genome-wide analysis of LXRα activation reveals new transcriptional networks in human atherosclerotic foam cells.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 6, p. 3518, doi. 10.1093/nar/gkt034

By:

Feldmann, Radmila;
Fischer, Cornelius;
Kodelja, Vitam;
Behrens, Sarah;
Haas, Stefan;
Vingron, Martin;
Timmermann, Bernd;
Geikowski, Anne;
Sauer, Sascha

Publication type:

Article

Disclosure of a structural milieu for the proximity ligation reveals the elusive nature of an active chromatin hub.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 6, p. 3563, doi. 10.1093/nar/gkt067

By:

Gavrilov, Alexey A.;
Gushchanskaya, Ekaterina S.;
Strelkova, Olga;
Zhironkina, Oksana;
Kireev, Igor I.;
Iarovaia, Olga V.;
Razin, Sergey V.

Publication type:

Article

Comprehensive in vivo RNA-binding site analyses reveal a role of Prp8 in spliceosomal assembly.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 6, p. 3805, doi. 10.1093/nar/gkt062

By:

Li, Xueni;
Zhang, Wenzheng;
Xu, Tao;
Ramsey, Jolene;
Zhang, Lingdi;
Hill, Ryan;
Hansen, Kirk C.;
Hesselberth, Jay R.;
Zhao, Rui

Publication type:

Article

Global profiling of miRNAs and the hairpin precursors: insights into miRNA processing and novel miRNA discovery.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 6, p. 3619, doi. 10.1093/nar/gkt072

By:

Li, Na;
You, Xintian;
Chen, Tao;
Mackowiak, Sebastian D.;
Friedländer, Marc R.;
Weigt, Martina;
Du, Hang;
Gogol-Döring, Andreas;
Chang, Zisong;
Dieterich, Christoph;
Hu, Yuhui;
Chen, Wei

Publication type:

Article

The small molecule Retro-1 enhances the pharmacological actions of antisense and splice switching oligonucleotides.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 6, p. 3673, doi. 10.1093/nar/gkt066

By:

Ming, Xin;
Carver, Kyle;
Fisher, Michael;
Noel, Romain;
Cintrat, Jean-Christophe;
Gillet, Daniel;
Barbier, Julien;
Cao, Canhong;
Bauman, John;
Juliano, Rudolph L.

Publication type:

Article

A systemic transcriptome analysis reveals the regulation of neural stem cell maintenance by an E2F1–miRNA feedback loop.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 6, p. 3699, doi. 10.1093/nar/gkt070

By:

Palm, Thomas;
Hemmer, Kathrin;
Winter, Julia;
Fricke, Inga B.;
Tarbashevich, Katsiaryna;
Sadeghi Shakib, Fereshteh;
Rudolph, Ina-Maria;
Hillje, Anna-Lena;
De Luca, Paola;
Bahnassawy, Lamia'a;
Madel, Rabea;
Viel, Thomas;
De Siervi, Adriana;
Jacobs, Andreas H.;
Diederichs, Sven;
Schwamborn, Jens C.

Publication type:

Article

In-solution hybrid capture of bisulfite-converted DNA for targeted bisulfite sequencing of 174 ADME genes.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 6, p. e72, doi. 10.1093/nar/gks1467

By:

Ivanov, Maxim;
Kals, Mart;
Kacevska, Marina;
Metspalu, Andres;
Ingelman-Sundberg, Magnus;
Milani, Lili

Publication type:

Article

Use of microarray hybrid capture and next-generation sequencing to identify the anatomy of a transgene.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 6, p. e70, doi. 10.1093/nar/gks1463

By:

DuBose, Amanda J.;
Lichtenstein, Stephen T.;
Narisu, Narisu;
Bonnycastle, Lori L.;
Swift, Amy J.;
Chines, Peter S.;
Collins, Francis S.

Publication type:

Article

Study of PcaV from Streptomyces coelicolor yields new insights into ligand-responsive MarR family transcription factors.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 6, p. 3888, doi. 10.1093/nar/gkt009

By:

Davis, Jennifer R.;
Brown, Breann L.;
Page, Rebecca;
Sello, Jason K.

Publication type:

Article

Epigenetic control of type 2 and 3 deiodinases in myogenesis: role of Lysine-specific Demethylase enzyme and FoxO3.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 6, p. 3551, doi. 10.1093/nar/gkt065

By:

Ambrosio, Raffaele;
Damiano, Valentina;
Sibilio, Annarita;
De Stefano, Maria Angela;
Avvedimento, Vittorio Enrico;
Salvatore, Domenico;
Dentice, Monica

Publication type:

Article

Co-regulated expression of alpha and beta mRNAs encoding HLA-DR surface heterodimers is mediated by the MHCII RNA operon.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 6, p. 3772, doi. 10.1093/nar/gkt059

By:

Pisapia, Laura;
Cicatiello, Valeria;
Barba, Pasquale;
Malanga, Donatella;
Maffei, Antonella;
Hamilton, Russell S.;
Del Pozzo, Giovanna

Publication type:

Article

Single-molecule sorting reveals how ubiquitylation affects substrate recognition and activities of FBH1 helicase.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 6, p. 3576, doi. 10.1093/nar/gkt056

By:

Masuda-Ozawa, Tokiha;
Hoang, Trish;
Seo, Yeon-Soo;
Chen, Lin-Feng;
Spies, Maria

Publication type:

Article

Mammalian Base Excision Repair: the Forgotten Archangel.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 6, p. 3483, doi. 10.1093/nar/gkt076

By:

Dianov, Grigory L.;
Hübscher, Ulrich

Publication type:

Article

Dicer-independent processing of short hairpin RNAs.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 6, p. 3723, doi. 10.1093/nar/gkt036

By:

Liu, Ying Poi;
Schopman, Nick C. T.;
Berkhout, Ben

Publication type:

Article

DNA damage signaling induced by the G-quadruplex ligand 12459 is modulated by PPM1D/WIP1 phosphatase.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 6, p. 3588, doi. 10.1093/nar/gkt073

By:

Douarre, Céline;
Mergui, Xénia;
Sidibe, Assitan;
Gomez, Dennis;
Alberti, Patrizia;
Mailliet, Patrick;
Trentesaux, Chantal;
Riou, Jean-François

Publication type:

Article

Molecular dissection of the silkworm ribosomal stalk complex: the role of multiple copies of the stalk proteins.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 6, p. 3635, doi. 10.1093/nar/gkt044

By:

Baba, Kentaro;
Tumuraya, Kazuhiro;
Tanaka, Isao;
Yao, Min;
Uchiumi, Toshio

Publication type:

Article

Transcribed pseudogene ψPPM1K generates endogenous siRNA to suppress oncogenic cell growth in hepatocellular carcinoma.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 6, p. 3734, doi. 10.1093/nar/gkt047

By:

Chan, Wen-Ling;
Yuo, Chung-Yee;
Yang, Wen-Kuang;
Hung, Shih-Ya;
Chang, Ya-Sian;
Chiu, Chien-Chih;
Yeh, Kun-Tu;
Huang, Hsien-Da;
Chang, Jan-Gowth

Publication type:

Article

Control of human adenovirus type 5 gene expression by cellular Daxx/ATRX chromatin-associated complexes.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 6, p. 3532, doi. 10.1093/nar/gkt064

By:

Schreiner, Sabrina;
Bürck, Carolin;
Glass, Mandy;
Groitl, Peter;
Wimmer, Peter;
Kinkley, Sarah;
Mund, Andreas;
Everett, Roger D.;
Dobner, Thomas

Publication type:

Article

Design, synthesis and biological evaluation of novel antagonist compounds of Toll-like receptors 7, 8 and 9.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 6, p. 3947, doi. 10.1093/nar/gkt078

By:

Kandimalla, Ekambar R.;
Bhagat, Lakshmi;
Wang, Daqing;
Yu, Dong;
Sullivan, Tim;
La Monica, Nicola;
Agrawal, Sudhir

Publication type:

Article

Sequence-specific inhibition of Dicer measured with a force-based microarray for RNA ligands.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 6, p. e69, doi. 10.1093/nar/gks1455

By:

Limmer, Katja;
Aschenbrenner, Daniela;
Gaub, Hermann E.

Publication type:

Article

Nucleic Acids Research - Editorial Board.

Published in:: Nucleic Acids Research, 2013, v. 41, n. 6, p. ii, doi. 10.1093/nar/gks1408
Publication type:: Article

iRSpot-PseDNC: identify recombination spots with pseudo dinucleotide composition.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 6, p. e68, doi. 10.1093/nar/gks1450

By:

Chen, Wei;
Feng, Peng-Mian;
Lin, Hao;
Chou, Kuo-Chen

Publication type:

Article

Structural basis for high-affinity binding of LEDGF PWWP to mononucleosomes.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 6, p. 3924, doi. 10.1093/nar/gkt074

By:

Eidahl, Jocelyn O.;
Crowe, Brandon L.;
North, Justin A.;
McKee, Christopher J.;
Shkriabai, Nikoloz;
Feng, Lei;
Plumb, Matthew;
Graham, Robert L.;
Gorelick, Robert J.;
Hess, Sonja;
Poirier, Michael G.;
Foster, Mark P.;
Kvaratskhelia, Mamuka

Publication type:

Article

Genome-wide copy number profiling of single cells in S-phase reveals DNA-replication domains.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 6, p. e66, doi. 10.1093/nar/gks1352

By:

Van der Aa, Niels;
Cheng, Jiqiu;
Mateiu, Ligia;
Esteki, Masoud Zamani;
Kumar, Parveen;
Dimitriadou, Eftychia;
Vanneste, Evelyne;
Moreau, Yves;
Vermeesch, Joris Robert;
Voet, Thierry

Publication type:

Article

Structural analysis of monomeric retroviral reverse transcriptase in complex with an RNA/DNA hybrid.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 6, p. 3874, doi. 10.1093/nar/gkt053

By:

Nowak, Elżbieta;
Potrzebowski, Wojciech;
Konarev, Petr V.;
Rausch, Jason W.;
Bona, Marion K.;
Svergun, Dmitri I.;
Bujnicki, Janusz M.;
Le Grice, Stuart F. J.;
Nowotny, Marcin

Publication type:

Article

Crystal structure of Cex1p reveals the mechanism of tRNA trafficking between nucleus and cytoplasm.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 6, p. 3901, doi. 10.1093/nar/gkt010

By:

Nozawa, Kayo;
Ishitani, Ryuichiro;
Yoshihisa, Tohru;
Sato, Mamoru;
Arisaka, Fumio;
Kanamaru, Shuji;
Dohmae, Naoshi;
Mangroo, Dev;
Senger, Bruno;
Becker, Hubert D.;
Nureki, Osamu

Publication type:

Article

Subscriptions.

Published in:: Nucleic Acids Research, 2013, v. 41, n. 6, p. iii, doi. 10.1093/nar/gks1432
Publication type:: Article

Structural and mechanical properties of individual human telomeric G-quadruplexes in molecularly crowded solutions.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 6, p. 3915, doi. 10.1093/nar/gkt038

By:

Dhakal, Soma;
Cui, Yunxi;
Koirala, Deepak;
Ghimire, Chiran;
Kushwaha, Saurabh;
Yu, Zhongbo;
Yangyuoru, Philip M.;
Mao, Hanbin

Publication type:

Article

Most RNAs regulating ribosomal protein biosynthesis in Escherichia coli are narrowly distributed to Gammaproteobacteria.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 6, p. 3491, doi. 10.1093/nar/gkt055

By:

Fu, Yang;
Deiorio-Haggar, Kaila;
Anthony, Jon;
Meyer, Michelle M.

Publication type:

Article

Exploring sRNA-mediated gene silencing mechanisms using artificial small RNAs derived from a natural RNA scaffold in Escherichia coli.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 6, p. 3787, doi. 10.1093/nar/gkt061

By:

Park, Hongmarn;
Bak, Geunu;
Kim, Sun Chang;
Lee, Younghoon

Publication type:

Article

Nucleic Acids Research.

Published in:: Nucleic Acids Research, 2013, v. 41, n. 6, p. i, doi. 10.1093/nar/gks1366
Publication type:: Article