Works matching IS 03051048 AND DT 2013 AND VI 41 AND IP 5

Results: 64

The nitrosated bile acid DNA lesion O6-carboxymethylguanine is a substrate for the human DNA repair protein O6-methylguanine-DNA methyltransferase.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 5, p. 3047, doi. 10.1093/nar/gks1476

By:

Senthong, Pattama;
Millington, Christopher L.;
Wilkinson, Oliver J.;
Marriott, Andrew S.;
Watson, Amanda J.;
Reamtong, Onrapak;
Eyers, Claire E.;
Williams, David M.;
Margison, Geoffrey P.;
Povey, Andrew C.

Publication type:

Article

Importance of adenosine-to-inosine editing adjacent to the anticodon in an Arabidopsis alanine tRNA under environmental stress.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 5, p. 3362, doi. 10.1093/nar/gkt013

By:

Zhou, Wenbin;
Karcher, Daniel;
Bock, Ralph

Publication type:

Article

Effects of DNA methylation on nucleosome stability.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 5, p. 2918, doi. 10.1093/nar/gks893

By:

Collings, Clayton K.;
Waddell, Peter J.;
Anderson, John N.

Publication type:

Article

TDP1 is an HMG chromatin protein facilitating RNA polymerase I transcription in African trypanosomes.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 5, p. 2981, doi. 10.1093/nar/gks1469

By:

Narayanan, Mani Shankar;
Rudenko, Gloria

Publication type:

Article

Turning gold into ‘junk’: transposable elements utilize central proteins of cellular networks.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 5, p. 3190

By:

Abrusán, György;
Szilágyi, András;
Zhang, Yang;
Papp, Balázs

Publication type:

Article

Epigenetic diversity of Kaposi’s sarcoma–associated herpesvirus.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 5, p. 2993, doi. 10.1093/nar/gkt033

By:

Darst, Russell P.;
Haecker, Irina;
Pardo, Carolina E.;
Renne, Rolf;
Kladde, Michael P.

Publication type:

Article

Insight into centromere-binding properties of ParB proteins: a secondary binding motif is essential for bacterial genome maintenance.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 5, p. 3094, doi. 10.1093/nar/gkt018

By:

Sanchez, Aurore;
Rech, Jérôme;
Gasc, Cyrielle;
Bouet, Jean-Yves

Publication type:

Article

Eukaryotic TPP riboswitch regulation of alternative splicing involving long-distance base pairing.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 5, p. 3022, doi. 10.1093/nar/gkt057

By:

Li, Sanshu;
Breaker, Ronald R.

Publication type:

Article

Transcription profiling during the cell cycle shows that a subset of Polycomb-targeted genes is upregulated during DNA replication.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 5, p. 2846, doi. 10.1093/nar/gks1336

By:

Peña-Diaz, Javier;
Hegre, Siv A.;
Anderssen, Endre;
Aas, Per A.;
Mjelle, Robin;
Gilfillan, Gregor D.;
Lyle, Robert;
Drabløs, Finn;
Krokan, Hans E.;
Sætrom, Pål

Publication type:

Article

Histone methyltransferase SETD2 coordinates FACT recruitment with nucleosome dynamics during transcription.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 5, p. 2881, doi. 10.1093/nar/gks1472

By:

Carvalho, Sílvia;
Raposo, Ana Cláudia;
Martins, Filipa Batalha;
Grosso, Ana Rita;
Sridhara, Sreerama Chaitanya;
Rino, José;
Carmo-Fonseca, Maria;
de Almeida, Sérgio Fernandes

Publication type:

Article

Improved methods for creating migratable Holliday junction substrates.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 5, p. e60, doi. 10.1093/nar/gks1343

By:

Chen, Stefanie Hartman;
Plank, Jody L.;
Willcox, Smaranda;
Griffith, Jack D.;
Hsieh, Tao-shih

Publication type:

Article

RNase H2 roles in genome integrity revealed by unlinking its activities.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 5, p. 3130, doi. 10.1093/nar/gkt027

By:

Chon, Hyongi;
Sparks, Justin L.;
Rychlik, Monika;
Nowotny, Marcin;
Burgers, Peter M.;
Crouch, Robert J.;
Cerritelli, Susana M.

Publication type:

Article

Cation-dependent folding of 3′ cap-independent translation elements facilitates interaction of a 17-nucleotide conserved sequence with eIF4G.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 5, p. 3398, doi. 10.1093/nar/gkt026

By:

Kraft, Jelena J.;
Treder, Krzysztof;
Peterson, Mariko S.;
Miller, W. Allen

Publication type:

Article

Nucleophosmin mutations alter its nucleolar localization by impairing G-quadruplex binding at ribosomal DNA.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 5, p. 3228, doi. 10.1093/nar/gkt001

By:

Chiarella, Sara;
De Cola, Antonella;
Scaglione, Giovanni Luca;
Carletti, Erminia;
Graziano, Vincenzo;
Barcaroli, Daniela;
Lo Sterzo, Carlo;
Di Matteo, Adele;
Di Ilio, Carmine;
Falini, Brunangelo;
Arcovito, Alessandro;
De Laurenzi, Vincenzo;
Federici, Luca

Publication type:

Article

Dual function of MIPS1 as a metabolic enzyme and transcriptional regulator.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 5, p. 2907, doi. 10.1093/nar/gks1458

By:

Latrasse, David;
Jégu, Teddy;
Meng, Pin-Hong;
Mazubert, Christelle;
Hudik, Elodie;
Delarue, Marianne;
Charon, Céline;
Crespi, Martin;
Hirt, Heribert;
Raynaud, Cécile;
Bergounioux, Catherine;
Benhamed, Moussa

Publication type:

Article

Helicobacter pylori DprA alleviates restriction barrier for incoming DNA.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 5, p. 3274, doi. 10.1093/nar/gkt024

By:

Dwivedi, Gajendradhar R.;
Sharma, Eshita;
Rao, Desirazu N.

Publication type:

Article

UV damage regulates alternative polyadenylation of the RPB2 gene in yeast.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 5, p. 3104, doi. 10.1093/nar/gkt020

By:

Yu, Lijian;
Volkert, Michael R.

Publication type:

Article

Nucleic Acids Research.

Published in:: Nucleic Acids Research, 2013, v. 41, n. 5, p. i, doi. 10.1093/nar/gks1366
Publication type:: Article

Histone H4 Lysine 20 methylation: key player in epigenetic regulation of genomic integrity.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 5, p. 2797, doi. 10.1093/nar/gkt012

By:

Jørgensen, Stine;
Schotta, Gunnar;
Sørensen, Claus Storgaard

Publication type:

Article

Mini-chromosome maintenance complexes form a filament to remodel DNA structure and topology.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 5, p. 3446, doi. 10.1093/nar/gkt022

By:

Slaymaker, Ian M.;
Fu, Yang;
Toso, Daniel B.;
Ranatunga, Nimna;
Brewster, Aaron;
Forsburg, Susan L.;
Zhou, Z. Hong;
Chen, Xiaojiang S.

Publication type:

Article

Molecular paleontology: a biochemical model of the ancestral ribosome.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 5, p. 3373, doi. 10.1093/nar/gkt023

By:

Hsiao, Chiaolong;
Lenz, Timothy K.;
Peters, Jessica K.;
Fang, Po-Yu;
Schneider, Dana M.;
Anderson, Eric J.;
Preeprem, Thanawadee;
Bowman, Jessica C.;
O'Neill, Eric B.;
Lie, Lively;
Athavale, Shreyas S.;
Gossett, J. Jared;
Trippe, Catherine;
Murray, Jason;
Petrov, Anton S.;
Wartell, Roger M.;
Harvey, Stephen C.;
Hud, Nicholas V.;
Dean Williams, Loren

Publication type:

Article

Differential roles for MBD2 and MBD3 at methylated CpG islands, active promoters and binding to exon sequences.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 5, p. 3010

By:

Günther, Katharina;
Rust, Mareike;
Leers, Joerg;
Boettger, Thomas;
Scharfe, Maren;
Jarek, Michael;
Bartkuhn, Marek;
Renkawitz, Rainer

Publication type:

Article

rDNA-directed integration by an HIV-1 integrase—I-PpoI fusion protein.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 5, p. e61, doi. 10.1093/nar/gks1438

By:

Schenkwein, Diana;
Turkki, Vesa;
Ahlroth, Mervi K.;
Timonen, Oskari;
Airenne, Kari J.;
Ylä-Herttuala, Seppo

Publication type:

Article

Evolutionary history of the TBP-domain superfamily.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 5, p. 2832, doi. 10.1093/nar/gkt045

By:

Brindefalk, Björn;
Dessailly, Benoit H.;
Yeats, Corin;
Orengo, Christine;
Werner, Finn;
Poole, Anthony M.

Publication type:

Article

Hyper conserved elements in vertebrate mRNA 3′-UTRs reveal a translational network of RNA-binding proteins controlled by HuR.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 5, p. 3201, doi. 10.1093/nar/gkt017

By:

Dassi, Erik;
Zuccotti, Paola;
Leo, Sara;
Provenzani, Alessandro;
Assfalg, Michael;
D’Onofrio, Mariapina;
Riva, Paola;
Quattrone, Alessandro

Publication type:

Article

CREB regulates the expression of neuronal glucose transporter 3: a possible mechanism related to impaired brain glucose uptake in Alzheimer’s disease.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 5, p. 3240, doi. 10.1093/nar/gks1227

By:

Jin, Nana;
Qian, Wei;
Yin, Xiaomin;
Zhang, Lan;
Iqbal, Khalid;
Grundke-Iqbal, Inge;
Gong, Cheng-Xin;
Liu, Fei

Publication type:

Article

Nap1 regulates proper CENP-B binding to nucleosomes.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 5, p. 2869, doi. 10.1093/nar/gks1464

By:

Tachiwana, Hiroaki;
Miya, Yuta;
Shono, Nobuaki;
Ohzeki, Jun-ichirou;
Osakabe, Akihisa;
Otake, Koichiro;
Larionov, Vladimir;
Earnshaw, William C.;
Kimura, Hiroshi;
Masumoto, Hiroshi;
Kurumizaka, Hitoshi

Publication type:

Article

Spontaneous telomere to telomere fusions occur in unperturbed fission yeast cells.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 5, p. 3056, doi. 10.1093/nar/gks1459

By:

Almeida, Hugo;
Godinho Ferreira, Miguel

Publication type:

Article

Development of bis-locked nucleic acid (bisLNA) oligonucleotides for efficient invasion of supercoiled duplex DNA.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 5, p. 3257, doi. 10.1093/nar/gkt007

By:

Moreno, Pedro M. D.;
Geny, Sylvain;
Pabon, Y. Vladimir;
Bergquist, Helen;
Zaghloul, Eman M.;
Rocha, Cristina S. J.;
Oprea, Iulian I.;
Bestas, Burcu;
Andaloussi, Samir EL;
Jørgensen, Per T.;
Pedersen, Erik B.;
Lundin, Karin E.;
Zain, Rula;
Wengel, Jesper;
Smith, C. I. Edvard

Publication type:

Article

A non-catalytic role of DNA polymerase η in recruiting Rad18 and promoting PCNA monoubiquitination at stalled replication forks.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 5, p. 3079, doi. 10.1093/nar/gkt016

By:

Durando, Michael;
Tateishi, Satoshi;
Vaziri, Cyrus

Publication type:

Article

Nucleosome mapping across the CFTR locus identifies novel regulatory factors.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 5, p. 2857, doi. 10.1093/nar/gks1462

By:

Yigit, Erbay;
Bischof, Jared M.;
Zhang, Zhaolin;
Ott, Christopher J.;
Kerschner, Jenny L.;
Leir, Shih-Hsing;
Buitrago-Delgado, Elsy;
Zhang, Quanwei;
Wang, Ji-Ping Z.;
Widom, Jonathan;
Harris, Ann

Publication type:

Article

Interplay of microRNAs, transcription factors and target genes: linking dynamic expression changes to function.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 5, p. 2817, doi. 10.1093/nar/gks1471

By:

Nazarov, Petr V.;
Reinsbach, Susanne E.;
Muller, Arnaud;
Nicot, Nathalie;
Philippidou, Demetra;
Vallar, Laurent;
Kreis, Stephanie

Publication type:

Article

Nucleic Acids Research - Editorial Board.

Published in:: Nucleic Acids Research, 2013, v. 41, n. 5, p. ii, doi. 10.1093/nar/gks1407
Publication type:: Article

Differential integrity of TALE nuclease genes following adenoviral and lentiviral vector gene transfer into human cells.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 5, p. e63, doi. 10.1093/nar/gks1446

By:

Holkers, Maarten;
Maggio, Ignazio;
Liu, Jin;
Janssen, Josephine M.;
Miselli, Francesca;
Mussolino, Claudio;
Recchia, Alessandra;
Cathomen, Toni;
Gonçalves, Manuel A. F. V.

Publication type:

Article

An autonomous chromatin/DNA-PK mechanism for localized DNA damage signaling in mammalian cells.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 5, p. 2894, doi. 10.1093/nar/gks1478

By:

Muñoz, Denise P.;
Kawahara, Misako;
Yannone, Steven M.

Publication type:

Article

MRX protects fork integrity at protein–DNA barriers, and its absence causes checkpoint activation dependent on chromatin context.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 5, p. 3173, doi. 10.1093/nar/gkt051

By:

Bentsen, Iben B.;
Nielsen, Ida;
Lisby, Michael;
Nielsen, Helena B.;
Gupta, Souvik Sen;
Mundbjerg, Kamilla;
Andersen, Anni H.;
Bjergbaek, Lotte

Publication type:

Article

Lewis acid catalysis of phosphoryl transfer from a copper(II)-NTP complex in a kinase ribozyme.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 5, p. 3327, doi. 10.1093/nar/gkt039

By:

Biondi, Elisa;
Poudyal, Raghav R.;
Forgy, Joshua C.;
Sawyer, Andrew W.;
Maxwell, Adam W. R.;
Burke, Donald H.

Publication type:

Article

MCPIP1 ribonuclease exhibits broad-spectrum antiviral effects through viral RNA binding and degradation.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 5, p. 3314, doi. 10.1093/nar/gkt019

By:

Lin, Ren-Jye;
Chien, Hsu-Ling;
Lin, Shyr-Yi;
Chang, Bi-Lan;
Yu, Han-Pang;
Tang, Wei-Chun;
Lin, Yi-Ling

Publication type:

Article

Evaluating the accuracy of SHAPE-directed RNA secondary structure predictions.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 5, p. 2807

By:

Sükösd, Zsuzsanna;
Swenson, M. Shel;
Kjems, Jørgen;
Heitsch, Christine E.

Publication type:

Article

Subscriptions.

Published in:: Nucleic Acids Research, 2013, v. 41, n. 5, p. iii, doi. 10.1093/nar/gks1431
Publication type:: Article

Mutational analysis of the ribosome assembly GTPase RbgA provides insight into ribosome interaction and ribosome-stimulated GTPase activation.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 5, p. 3217, doi. 10.1093/nar/gks1475

By:

Gulati, Megha;
Jain, Nikhil;
Anand, Baskaran;
Prakash, Balaji;
Britton, Robert A.

Publication type:

Article

Characterization of MicA interactions suggests a potential novel means of gene regulation by small non-coding RNAs.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 5, p. 3386, doi. 10.1093/nar/gkt008

By:

Henderson, Charlotte A.;
Vincent, Helen A.;
Stone, Carlanne M.;
Phillips, Jack O.;
Cary, Peter D.;
Gowers, Darren M.;
Callaghan, Anastasia J.

Publication type:

Article

ParseCNV integrative copy number variation association software with quality tracking.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 5, p. e64, doi. 10.1093/nar/gks1346

By:

Glessner, Joseph T.;
Li, Jin;
Hakonarson, Hakon

Publication type:

Article

An efficient method for genome-wide polyadenylation site mapping and RNA quantification.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 5, p. e65, doi. 10.1093/nar/gks1249

By:

Wilkening, Stefan;
Pelechano, Vicent;
Järvelin, Aino I.;
Tekkedil, Manu M.;
Anders, Simon;
Benes, Vladimir;
Steinmetz, Lars M.

Publication type:

Article

Conformational rearrangements of RIG-I receptor on formation of a multiprotein:dsRNA assembly.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 5, p. 3436, doi. 10.1093/nar/gks1477

By:

Beckham, Simone A.;
Brouwer, Jason;
Roth, Anna;
Wang, Die;
Sadler, Anthony J.;
John, Matthias;
Jahn-Hofmann, Kerstin;
Williams, Bryan R. G.;
Wilce, Jacqueline A.;
Wilce, Matthew C. J.

Publication type:

Article

Genome-wide localization of exosome components to active promoters and chromatin insulators in Drosophila.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 5, p. 2963, doi. 10.1093/nar/gkt037

By:

Lim, Su Jun;
Boyle, Patrick J.;
Chinen, Madoka;
Dale, Ryan K.;
Lei, Elissa P.

Publication type:

Article

Structural insights into RISC assembly facilitated by dsRNA-binding domains of human RNA helicase A (DHX9).

Published in:

Nucleic Acids Research, 2013, v. 41, n. 5, p. 3457, doi. 10.1093/nar/gkt042

By:

Fu, Qinqin;
Yuan, Y. Adam

Publication type:

Article

Expanded target and cofactor repertoire for the transcriptional activator LysM from Sulfolobus.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 5, p. 2932, doi. 10.1093/nar/gkt021

By:

Song, Ningning;
Nguyen Duc, Trong;
van Oeffelen, Liesbeth;
Muyldermans, Serge;
Peeters, Eveline;
Charlier, Daniel

Publication type:

Article

Structure, evolution and function of the bi-directionally transcribed iab-4/iab-8 microRNA locus in arthropods.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 5, p. 3352, doi. 10.1093/nar/gks1445

By:

Hui, Jerome H. L.;
Marco, Antonio;
Hunt, Suzanne;
Melling, Janet;
Griffiths-Jones, Sam;
Ronshaugen, Matthew

Publication type:

Article

In the absence of ATPase activity, pre-RC formation is blocked prior to MCM2–7 hexamer dimerization.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 5, p. 3162, doi. 10.1093/nar/gkt043

By:

Evrin, Cecile;
Fernández-Cid, Alejandra;
Zech, Juergen;
Herrera, M. Carmen;
Riera, Alberto;
Clarke, Pippa;
Brill, Shlomo;
Lurz, Rudi;
Speck, Christian

Publication type:

Article