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Prospects and limitations of full-text index structures in genome analysis.
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- Nucleic Acids Research, 2012, v. 40, n. 15, p. 6993, doi. 10.1093/nar/gks408
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RNA-dependent regulation of the cell wall stress response.
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- Nucleic Acids Research, 2012, v. 40, n. 15, p. 7507, doi. 10.1093/nar/gks411
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Detection of transcriptional triggers in the dynamics of microbial growth: application to the respiratorily versatile bacterium Shewanella oneidensis.
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- Nucleic Acids Research, 2012, v. 40, n. 15, p. 7132, doi. 10.1093/nar/gks467
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Cryptic transcripts from a ubiquitous plasmid origin of replication confound tests for cis-regulatory function.
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- Nucleic Acids Research, 2012, v. 40, n. 15, p. 7280, doi. 10.1093/nar/gks451
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Repetitive elements and enforced transcriptional repression co-operate to enhance DNA methylation spreading into a promoter CpG-island.
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- Nucleic Acids Research, 2012, v. 40, n. 15, p. 7257, doi. 10.1093/nar/gks429
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Topological characterization of the DnaA–oriC complex using single-molecule nanomanipuation.
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- Nucleic Acids Research, 2012, v. 40, n. 15, p. 7375, doi. 10.1093/nar/gks371
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Genome-wide analysis of p63 binding sites identifies AP-2 factors as co-regulators of epidermal differentiation.
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- Nucleic Acids Research, 2012, v. 40, n. 15, p. 7190, doi. 10.1093/nar/gks389
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The magnitude and colour of noise in genetic negative feedback systems.
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- Nucleic Acids Research, 2012, v. 40, n. 15, p. 7084, doi. 10.1093/nar/gks385
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Mycobacterium smegmatis SftH exemplifies a distinctive clade of superfamily II DNA-dependent ATPases with 3′ to 5′ translocase and helicase activities.
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- Nucleic Acids Research, 2012, v. 40, n. 15, p. 7465, doi. 10.1093/nar/gks417
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Engineering synthetic TAL effectors with orthogonal target sites.
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- Nucleic Acids Research, 2012, v. 40, n. 15, p. 7584, doi. 10.1093/nar/gks404
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The FleQ protein from Pseudomonas aeruginosa functions as both a repressor and an activator to control gene expression from the pel operon promoter in response to c-di-GMP.
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- Nucleic Acids Research, 2012, v. 40, n. 15, p. 7207, doi. 10.1093/nar/gks384
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Subscriptions.
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- Nucleic Acids Research, 2012, v. 40, n. 15, p. iii, doi. 10.1093/nar/gks121
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Nucleic Acids Research.
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- Nucleic Acids Research, 2012, v. 40, n. 15, p. i, doi. 10.1093/nar/gks099
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- Article
Primer3—new capabilities and interfaces.
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- Nucleic Acids Research, 2012, v. 40, n. 15, p. e115, doi. 10.1093/nar/gks596
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Tracing the path of DNA substrates in active Tetrahymena telomerase holoenzyme complexes: mapping of DNA contact sites in the RNA subunit.
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- Nucleic Acids Research, 2012, v. 40, n. 15, p. 7430, doi. 10.1093/nar/gks416
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Myh7b/miR-499 gene expression is transcriptionally regulated by MRFs and Eos.
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- Nucleic Acids Research, 2012, v. 40, n. 15, p. 7303, doi. 10.1093/nar/gks466
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Identification of novel NRF2-regulated genes by ChIP-Seq: influence on retinoid X receptor alpha.
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- Nucleic Acids Research, 2012, v. 40, n. 15, p. 7416, doi. 10.1093/nar/gks409
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SAYP and Brahma are important for ‘repressive’ and ‘transient’ Pol II pausing.
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- Nucleic Acids Research, 2012, v. 40, n. 15, p. 7319, doi. 10.1093/nar/gks472
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Codon usage bias in prokaryotic pyrimidine-ending codons is associated with the degeneracy of the encoded amino acids.
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- Nucleic Acids Research, 2012, v. 40, n. 15, p. 7074, doi. 10.1093/nar/gks348
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RI-1: a chemical inhibitor of RAD51 that disrupts homologous recombination in human cells.
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- Nucleic Acids Research, 2012, v. 40, n. 15, p. 7347, doi. 10.1093/nar/gks353
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A genetic screen for terminator function in yeast identifies a role for a new functional domain in termination factor Nab3.
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- Nucleic Acids Research, 2012, v. 40, n. 15, p. 7476, doi. 10.1093/nar/gks377
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Dynamic acetylation of lysine-4-trimethylated histone H3 and H3 variant biology in a simple multicellular eukaryote.
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- Nucleic Acids Research, 2012, v. 40, n. 15, p. 7247, doi. 10.1093/nar/gks367
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Active site opening and closure control translocation of multisubunit RNA polymerase.
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- Nucleic Acids Research, 2012, v. 40, n. 15, p. 7442, doi. 10.1093/nar/gks383
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Iterative capped assembly: rapid and scalable synthesis of repeat-module DNA such as TAL effectors from individual monomers.
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- Nucleic Acids Research, 2012, v. 40, n. 15, p. e117, doi. 10.1093/nar/gks624
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A new way of measuring apoptosis by absolute quantitation of inter-nucleosomally fragmented genomic DNA.
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- Nucleic Acids Research, 2012, v. 40, n. 15, p. e113, doi. 10.1093/nar/gks334
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A benchmark for chromatin binding measurements in live cells.
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- Nucleic Acids Research, 2012, v. 40, n. 15, p. e119, doi. 10.1093/nar/gks701
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Characterization and prediction of the binding site in DNA-binding proteins: improvement of accuracy by combining residue composition, evolutionary conservation and structural parameters.
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- Nucleic Acids Research, 2012, v. 40, n. 15, p. 7150, doi. 10.1093/nar/gks405
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Thermodynamics of the multi-stage DNA lesion recognition and repair by formamidopyrimidine-DNA glycosylase using pyrrolocytosine fluorescence—stopped-flow pre-steady-state kinetics.
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- Nucleic Acids Research, 2012, v. 40, n. 15, p. 7384, doi. 10.1093/nar/gks423
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A role for chromatin remodellers in replication of damaged DNA.
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- Nucleic Acids Research, 2012, v. 40, n. 15, p. 7393, doi. 10.1093/nar/gks453
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Rapid incorporation kinetics and improved fidelity of a novel class of 3′-OH unblocked reversible terminators.
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- Nucleic Acids Research, 2012, v. 40, n. 15, p. 7404, doi. 10.1093/nar/gks330
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i-cisTarget: an integrative genomics method for the prediction of regulatory features and cis-regulatory modules.
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- Nucleic Acids Research, 2012, v. 40, n. 15, p. e114, doi. 10.1093/nar/gks543
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The evolutionary dynamics of functional modules and the extraordinary plasticity of regulons: the Escherichia coli perspective.
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- Nucleic Acids Research, 2012, v. 40, n. 15, p. 7104, doi. 10.1093/nar/gks443
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Sequence, structure and functional diversity of PD-(D/E)XK phosphodiesterase superfamily.
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- Nucleic Acids Research, 2012, v. 40, n. 15, p. 7016, doi. 10.1093/nar/gks382
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A high-throughput next-generation sequencing-based method for detecting the mutational fingerprint of carcinogens.
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- Nucleic Acids Research, 2012, v. 40, n. 15, p. e116, doi. 10.1093/nar/gks610
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The Lin28 cold-shock domain remodels pre-let-7 microRNA.
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- Nucleic Acids Research, 2012, v. 40, n. 15, p. 7492, doi. 10.1093/nar/gks355
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Structural bioinformatics of the human spliceosomal proteome.
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- Nucleic Acids Research, 2012, v. 40, n. 15, p. 7046, doi. 10.1093/nar/gks347
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Quencher-free multiplexed monitoring of DNA reaction circuits.
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- Nucleic Acids Research, 2012, v. 40, n. 15, p. e118, doi. 10.1093/nar/gks621
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The testis-specific double bromodomain-containing protein BRDT forms a complex with multiple spliceosome components and is required for mRNA splicing and 3′-UTR truncation in round spermatids.
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- Nucleic Acids Research, 2012, v. 40, n. 15, p. 7162, doi. 10.1093/nar/gks342
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Cap-dependent translation without base-by-base scanning of an messenger ribonucleic acid.
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- Nucleic Acids Research, 2012, v. 40, n. 15, p. 7541, doi. 10.1093/nar/gks471
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Stochastic simulation for the inference of transcriptional control network of yeast cyclins genes.
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- Nucleic Acids Research, 2012, v. 40, n. 15, p. 7096, doi. 10.1093/nar/gks440
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BIM promoter directly targeted by EBNA3C in polycomb-mediated repression by EBV.
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- Nucleic Acids Research, 2012, v. 40, n. 15, p. 7233, doi. 10.1093/nar/gks391
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The recognition domain of the methyl-specific endonuclease McrBC flips out 5-methylcytosine.
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- Nucleic Acids Research, 2012, v. 40, n. 15, p. 7552, doi. 10.1093/nar/gks332
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Comparative genomic and proteomic analyses of PE/PPE multigene family of Mycobacterium tuberculosis H37Rv and H37Ra reveal novel and interesting differences with implications in virulence.
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- Nucleic Acids Research, 2012, v. 40, n. 15, p. 7113, doi. 10.1093/nar/gks465
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Linear motifs confer functional diversity onto splice variants.
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- Nucleic Acids Research, 2012, v. 40, n. 15, p. 7123, doi. 10.1093/nar/gks442
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CRL4–DDB1–VPRBP ubiquitin ligase mediates the stress triggered proteolysis of Mcm10.
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- Nucleic Acids Research, 2012, v. 40, n. 15, p. 7332, doi. 10.1093/nar/gks366
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Measurements of DNA-loop formation via Cre-mediated recombination.
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- Nucleic Acids Research, 2012, v. 40, n. 15, p. 7452, doi. 10.1093/nar/gks430
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Crystal structure and mechanism of action of the N6-methyladenine-dependent type IIM restriction endonuclease R.DpnI.
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- Nucleic Acids Research, 2012, v. 40, n. 15, p. 7563, doi. 10.1093/nar/gks428
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A small ribozyme with dual-site kinase activity.
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- Nucleic Acids Research, 2012, v. 40, n. 15, p. 7528, doi. 10.1093/nar/gks356
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The catalytic cycle for ribonucleotide incorporation by human DNA Pol λ.
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- Nucleic Acids Research, 2012, v. 40, n. 15, p. 7518, doi. 10.1093/nar/gks413
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Chromatin architectures at fission yeast transcriptional promoters and replication origins.
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- Nucleic Acids Research, 2012, v. 40, n. 15, p. 7176, doi. 10.1093/nar/gks351
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