Works matching IS 03051048 AND DT 2012 AND VI 40 AND IP 12

Results: 62

Unveiling combinatorial regulation through the combination of ChIP information and in silico cis-regulatory module detection.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 12, p. e90, doi. 10.1093/nar/gks237

By:

Sun, Hong;
Guns, Tias;
Fierro, Ana Carolina;
Thorrez, Lieven;
Nijssen, Siegfried;
Marchal, Kathleen

Publication type:

Article

Subscriptions.

Published in:: Nucleic Acids Research, 2012, v. 40, n. 12, p. iii, doi. 10.1093/nar/gks118
Publication type:: Article

HnRNP L and L-like cooperate in multiple-exon regulation of CD45 alternative splicing.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 12, p. 5666, doi. 10.1093/nar/gks221

By:

Preußner, Marco;
Schreiner, Silke;
Hung, Lee-Hsueh;
Porstner, Martina;
Jäck, Hans-Martin;
Benes, Vladimir;
Rätsch, Gunnar;
Bindereif, Albrecht

Publication type:

Article

Glycyl-tRNA synthetase specifically binds to the poliovirus IRES to activate translation initiation.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 12, p. 5602, doi. 10.1093/nar/gks182

By:

Andreev, Dmitri E.;
Hirnet, Juliane;
Terenin, Ilya M.;
Dmitriev, Sergey E.;
Niepmann, Michael;
Shatsky, Ivan N.

Publication type:

Article

Intracellular stability of 2′-OMe-4′-thioribonucleoside modified siRNA leads to long-term RNAi effect.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 12, p. 5787, doi. 10.1093/nar/gks204

By:

Takahashi, Mayumi;
Nagai, Chisato;
Hatakeyama, Hiroto;
Minakawa, Noriaki;
Harashima, Hideyoshi;
Matsuda, Akira

Publication type:

Article

Proteins and DNA elements essential for the CRISPR adaptation process in Escherichia coli.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 12, p. 5569, doi. 10.1093/nar/gks216

By:

Yosef, Ido;
Goren, Moran G.;
Qimron, Udi

Publication type:

Article

Methyl methanesulfonate (MMS) produces heat-labile DNA damage but no detectable in vivo DNA double-strand breaks.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 12, p. 5794, doi. 10.1093/nar/gks589

By:

Lundin, Cecilia;
North, Matthew;
Erixon, Klaus;
Walters, Kevin;
Jenssen, Dag;
Goldman, Alastair S. H.;
Helleday, Thomas

Publication type:

Article

Detection and imaging of the free radical DNA in cells—Site-specific radical formation induced by Fenton chemistry and its repair in cellular DNA as seen by electron spin resonance, immuno-spin trapping and confocal microscopy.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 12, p. 5477, doi. 10.1093/nar/gks180

By:

Bhattacharjee, Suchandra;
Chatterjee, Saurabh;
Jiang, JinJie;
Sinha, Birandra Kumar;
Mason, Ronald P.

Publication type:

Article

Co-evolution of segregation guide DNA motifs and the FtsK translocase in bacteria: identification of the atypical Lactococcus lactis KOPS motif.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 12, p. 5535, doi. 10.1093/nar/gks171

By:

Nolivos, Sophie;
Touzain, Fabrice;
Pages, Carine;
Coddeville, Michele;
Rousseau, Philippe;
El Karoui, Meriem;
Le Bourgeois, Pascal;
Cornet, François

Publication type:

Article

Regulation of AT1R expression through HuR by insulin.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 12, p. 5250, doi. 10.1093/nar/gks170

By:

Paukku, Kirsi;
Backlund, Michael;
De Boer, Rudolf A.;
Kalkkinen, Nisse;
Kontula, Kimmo K.;
Lehtonen, Jukka Y. A.

Publication type:

Article

Selectivity of stop codon recognition in translation termination is modulated by multiple conformations of GTS loop in eRF1.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 12, p. 5751, doi. 10.1093/nar/gks192

By:

Wong, Leo E.;
Li, Yan;
Pillay, Shubhadra;
Frolova, Ludmila;
Pervushin, Konstantin

Publication type:

Article

Selective disruption of the DNA polymerase III α–β complex by the umuD gene products.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 12, p. 5511, doi. 10.1093/nar/gks229

By:

Silva, Michelle C.;
Nevin, Philip;
Ronayne, Erin A.;
Beuning, Penny J.

Publication type:

Article

Drosophila melanogaster linker histone dH1 is required for transposon silencing and to preserve genome integrity.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 12, p. 5402, doi. 10.1093/nar/gks224

By:

Vujatovic, Olivera;
Zaragoza, Katrin;
Vaquero, Alejandro;
Reina, Oscar;
Bernués, Jordi;
Azorín, Fernando

Publication type:

Article

The role of N-terminus of Plasmodium falciparum ORC1 in telomeric localization and var gene silencing.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 12, p. 5313, doi. 10.1093/nar/gks202

By:

Deshmukh, Abhijit S.;
Srivastava, Sandeep;
Herrmann, Susann;
Gupta, Ashish;
Mitra, Pallabi;
Gilberger, Tim Wolf;
Dhar, Suman Kumar

Publication type:

Article

CBX4-mediated SUMO modification regulates BMI1 recruitment at sites of DNA damage.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 12, p. 5497, doi. 10.1093/nar/gks222

By:

Ismail, Ismail Hassan;
Gagné, Jean-Philippe;
Caron, Marie-Christine;
McDonald, Darin;
Xu, Zhizhong;
Masson, Jean-Yves;
Poirier, Guy G.;
Hendzel, Michael J.

Publication type:

Article

Related haloarchaeal pleomorphic viruses contain different genome types.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 12, p. 5523, doi. 10.1093/nar/gks215

By:

Senčilo, Ana;
Paulin, Lars;
Kellner, Stefanie;
Helm, Mark;
Roine, Elina

Publication type:

Article

Interaction of human telomeric DNA with N-methyl mesoporphyrin IX.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 12, p. 5432, doi. 10.1093/nar/gks152

By:

Nicoludis, John M.;
Barrett, Steven P.;
Mergny, Jean-Louis;
Yatsunyk, Liliya A.

Publication type:

Article

Engineered zinc finger nickases induce homology-directed repair with reduced mutagenic effects.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 12, p. 5560, doi. 10.1093/nar/gks179

By:

Ramirez, Cherie L.;
Certo, Michael T.;
Mussolino, Claudio;
Goodwin, Mathew J.;
Cradick, Thomas J.;
McCaffrey, Anton P.;
Cathomen, Toni;
Scharenberg, Andrew M.;
Joung, J. Keith

Publication type:

Article

The high-resolution crystal structure of a parallel intermolecular DNA G-4 quadruplex/drug complex employing syn glycosyl linkages.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 12, p. 5731, doi. 10.1093/nar/gks193

By:

Clark, George R.;
Pytel, Patrycja D.;
Squire, Christopher J.

Publication type:

Article

Global or local? Predicting secondary structure and accessibility in mRNAs.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 12, p. 5215, doi. 10.1093/nar/gks181

By:

Lange, Sita J.;
Maticzka, Daniel;
Möhl, Mathias;
Gagnon, Joshua N.;
Brown, Chris M.;
Backofen, Rolf

Publication type:

Article

Neural stem cells exposed to BrdU lose their global DNA methylation and undergo astrocytic differentiation.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 12, p. 5332, doi. 10.1093/nar/gks207

By:

Schneider, Leonid;
d’Adda di Fagagna, Fabrizio

Publication type:

Article

Engineering naturally occurring trans-acting non-coding RNAs to sense molecular signals.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 12, p. 5775, doi. 10.1093/nar/gks168

By:

Qi, Lei;
Lucks, Julius B.;
Liu, Chang C.;
Mutalik, Vivek K.;
Arkin, Adam P.

Publication type:

Article

High-throughput single-molecule analysis of DNA–protein interactions by tethered particle motion.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 12, p. e89, doi. 10.1093/nar/gks250

By:

Plénat, Thomas;
Tardin, Catherine;
Rousseau, Philippe;
Salomé, Laurence

Publication type:

Article

Single-molecule multiparameter fluorescence spectroscopy reveals directional MutS binding to mismatched bases in DNA.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 12, p. 5448

By:

Cristóvão, Michele;
Sisamakis, Evangelos;
Hingorani, Manju M.;
Marx, Andreas D.;
Jung, Caroline P.;
Rothwell, Paul J.;
Seidel, Claus A. M.;
Friedhoff, Peter

Publication type:

Article

Architecture of the trypanosome RNA editing accessory complex, MRB1.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 12, p. 5637, doi. 10.1093/nar/gks211

By:

Ammerman, Michelle L.;
Downey, Kurtis M.;
Hashimi, Hassan;
Fisk, John C.;
Tomasello, Danielle L.;
Faktorová, Drahomíra;
Kafková, Lucie;
King, Tony;
Lukeš, Julius;
Read, Laurie K.

Publication type:

Article

Grinder: a versatile amplicon and shotgun sequence simulator.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 12, p. e94, doi. 10.1093/nar/gks251

By:

Angly, Florent E.;
Willner, Dana;
Rohwer, Forest;
Hugenholtz, Philip;
Tyson, Gene W.

Publication type:

Article

Genome-wide studies of the multi-zinc finger Drosophila Suppressor of Hairy-wing protein in the ovary.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 12, p. 5415, doi. 10.1093/nar/gks225

By:

Soshnev, Alexey A.;
He, Bing;
Baxley, Ryan M.;
Jiang, Nan;
Hart, Craig M.;
Tan, Kai;
Geyer, Pamela K.

Publication type:

Article

MicroRNA and transcription factor co-regulatory network analysis reveals miR-19 inhibits CYLD in T-cell acute lymphoblastic leukemia.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 12, p. 5201, doi. 10.1093/nar/gks175

By:

Ye, Huashan;
Liu, Xiaowen;
Lv, Meng;
Wu, Yuliang;
Kuang, Shuzhen;
Gong, Jing;
Yuan, Ping;
Zhong, Zhaodong;
Li, Qiubai;
Jia, Haibo;
Sun, Jun;
Chen, Zhichao;
Guo, An-Yuan

Publication type:

Article

A robust PCR primer design platform applied to the detection of Acidobacteria Group 1 in soil.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 12, p. e96, doi. 10.1093/nar/gks238

By:

Gans, Jason D.;
Dunbar, John;
Eichorst, Stephanie A.;
Gallegos-Graves, La Verne;
Wolinsky, Murray;
Kuske, Cheryl R.

Publication type:

Article

Structural, functional and evolutionary relationships between homing endonucleases and proteins from their host organisms.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 12, p. 5189, doi. 10.1093/nar/gks226

By:

Taylor, Gregory K.;
Stoddard, Barry L.

Publication type:

Article

Replication fork movement and methylation govern SeqA binding to the Escherichia coli chromosome.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 12, p. 5465, doi. 10.1093/nar/gks187

By:

Waldminghaus, Torsten;
Weigel, Christoph;
Skarstad, Kirsten

Publication type:

Article

Budding yeast telomerase RNA transcription termination is dictated by the Nrd1/Nab3 non-coding RNA termination pathway.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 12, p. 5625, doi. 10.1093/nar/gks200

By:

Noël, Jean-François;
Larose, Stéphanie;
Abou Elela, Sherif;
Wellinger, Raymund J.

Publication type:

Article

Analysis of lysine recognition and specificity of the Bacillus subtilis L box riboswitch.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 12, p. 5706, doi. 10.1093/nar/gks212

By:

Wilson-Mitchell, Sharnise N.;
Grundy, Frank J.;
Henkin, Tina M.

Publication type:

Article

R-chie: a web server and R package for visualizing RNA secondary structures.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 12, p. e95, doi. 10.1093/nar/gks241

By:

Lai, Daniel;
Proctor, Jeff R.;
Zhu, Jing Yun A.;
Meyer, Irmtraud M.

Publication type:

Article

Inhibition of the function of class IIa HDACs by blocking their interaction with MEF2.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 12, p. 5378, doi. 10.1093/nar/gks189

By:

Jayathilaka, Nimanthi;
Han, Aidong;
Gaffney, Kevin J.;
Dey, Raja;
Jarusiewicz, Jamie A.;
Noridomi, Kaori;
Philips, Michael A.;
Lei, Xiao;
He, Ju;
Ye, Jun;
Gao, Tao;
Petasis, Nicos A.;
Chen, Lin

Publication type:

Article

Bayesian estimation of bacterial community composition from 454 sequencing data.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 12, p. 5240, doi. 10.1093/nar/gks227

By:

Cheng, Lu;
Walker, Alan W.;
Corander, Jukka

Publication type:

Article

Transcriptional provirus silencing as a crosstalk of de novo DNA methylation and epigenomic features at the integration site.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 12, p. 5298, doi. 10.1093/nar/gks197

By:

Šenigl, Filip;
Auxt, Miroslav;
Hejnar, Jiří

Publication type:

Article

Bacillus subtilis genome editing using ssDNA with short homology regions.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 12, p. e91, doi. 10.1093/nar/gks248

By:

Wang, Yang;
Weng, Jun;
Waseem, Raza;
Yin, Xihou;
Zhang, Ruifu;
Shen, Qirong

Publication type:

Article

Air2p is critical for the assembly and RNA-binding of the TRAMP complex and the KOW domain of Mtr4p is crucial for exosome activation.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 12, p. 5679, doi. 10.1093/nar/gks223

By:

Holub, Peter;
Lalakova, Jana;
Cerna, Hana;
Pasulka, Josef;
Sarazova, Marie;
Hrazdilova, Kristyna;
Arce, Maria Sanudo;
Hobor, Fruzsina;
Stefl, Richard;
Vanacova, Stepanka

Publication type:

Article

CTCF binds to sites in the major histocompatibility complex that are rapidly reconfigured in response to interferon-gamma.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 12, p. 5262, doi. 10.1093/nar/gks158

By:

Ottaviani, Diego;
Lever, Elliott;
Mao, Shihong;
Christova, Rossitza;
Ogunkolade, Babatunji W.;
Jones, Tania A.;
Szary, Jaroslaw;
Aarum, Johan;
Mumin, Muhammad A.;
Pieri, Christopher A.;
Krawetz, Stephen A.;
Sheer, Denise

Publication type:

Article

Aberrant growth and lethality of Arabidopsis deficient in nonsense-mediated RNA decay factors is caused by autoimmune-like response.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 12, p. 5615, doi. 10.1093/nar/gks195

By:

Riehs-Kearnan, Nina;
Gloggnitzer, Jiradet;
Dekrout, Bettina;
Jonak, Claudia;
Riha, Karel

Publication type:

Article

CORECLUST: identification of the conserved CRM grammar together with prediction of gene regulation.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 12, p. e93, doi. 10.1093/nar/gks235

By:

Nikulova, Anna A.;
Favorov, Alexander V.;
Sutormin, Roman A.;
Makeev, Vsevolod J.;
Mironov, Andrey A.

Publication type:

Article

Structural and functional characterization of interactions involving the Tfb1 subunit of TFIIH and the NER factor Rad2.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 12, p. 5739, doi. 10.1093/nar/gks194

By:

Lafrance-Vanasse, Julien;
Arseneault, Geneviève;
Cappadocia, Laurent;
Chen, Hung-Ta;
Legault, Pascale;
Omichinski, James G.

Publication type:

Article

Genetic recombination in Bacillus subtilis: a division of labor between two single-strand DNA-binding proteins.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 12, p. 5546, doi. 10.1093/nar/gks173

By:

Yadav, Tribhuwan;
Carrasco, Begoña;
Myers, Angela R.;
George, Nicholas P.;
Keck, James L.;
Alonso, Juan C.

Publication type:

Article

The Caenorhabditis elegans GW182 protein AIN-1 interacts with PAB-1 and subunits of the PAN2-PAN3 and CCR4-NOT deadenylase complexes.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 12, p. 5651

By:

Kuzuoğlu-Öztürk, Duygu;
Huntzinger, Eric;
Schmidt, Steffen;
Izaurralde, Elisa

Publication type:

Article

The cellular abundance of the essential transcription termination factor TTF-I regulates ribosome biogenesis and is determined by MDM2 ubiquitinylation.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 12, p. 5357, doi. 10.1093/nar/gks198

By:

Lessard, Frédéric;
Stefanovsky, Victor;
Tremblay, Michel G.;
Moss, Tom

Publication type:

Article

How much can we learn about the function of bacterial rRNA modification by mining large-scale experimental datasets?

Published in:

Nucleic Acids Research, 2012, v. 40, n. 12, p. 5694, doi. 10.1093/nar/gks219

By:

Sergiev, Petr V.;
Golovina, Anna Y.;
Sergeeva, Olga V.;
Osterman, Ilya A.;
Nesterchuk, Mikhail V.;
Bogdanov, Alexey A.;
Dontsova, Olga A.

Publication type:

Article

Identification of a binding motif specific to HNF4 by comparative analysis of multiple nuclear receptors.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 12, p. 5343, doi. 10.1093/nar/gks190

By:

Fang, Bin;
Mane-Padros, Daniel;
Bolotin, Eugene;
Jiang, Tao;
Sladek, Frances M.

Publication type:

Article

Tye7 regulates yeast Ty1 retrotransposon sense and antisense transcription in response to adenylic nucleotides stress.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 12, p. 5271, doi. 10.1093/nar/gks166

By:

Servant, Géraldine;
Pinson, Benoit;
Tchalikian-Cosson, Aurélie;
Coulpier, Fanny;
Lemoine, Sophie;
Pennetier, Carole;
Bridier-Nahmias, Antoine;
Todeschini, Anne Laure;
Fayol, Hélène;
Daignan-Fornier, Bertrand;
Lesage, Pascale

Publication type:

Article

Microhomology-mediated DNA strand annealing and elongation by human DNA polymerases λ and β on normal and repetitive DNA sequences.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 12, p. 5577, doi. 10.1093/nar/gks186

By:

Crespan, Emmanuele;
Czabany, Tibor;
Maga, Giovanni;
Hübscher, Ulrich

Publication type:

Article