Works matching IS 03051048 AND DT 2012 AND VI 40 AND IP 3

Results: 47

RNA-seq analysis of small RNPs in Trypanosoma brucei reveals a rich repertoire of non-coding RNAs.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 3, p. 1282, doi. 10.1093/nar/gkr786

By:

Michaeli, Shulamit;
Doniger, Tirza;
Gupta, Sachin Kumar;
Wurtzel, Omri;
Romano, Mali;
Visnovezky, Damian;
Sorek, Rotem;
Unger, Ron;
Ullu, Elisabetta

Publication type:

Article

Asymmetric nature of two subunits of RAD18, a RING-type ubiquitin ligase E3, in the human RAD6A–RAD18 ternary complex.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 3, p. 1065, doi. 10.1093/nar/gkr805

By:

Masuda, Yuji;
Suzuki, Miki;
Kawai, Hidehiko;
Suzuki, Fumio;
Kamiya, Kenji

Publication type:

Article

Nucleic Acids Research - Editorial Board.

Published in:: Nucleic Acids Research, 2012, v. 40, n. 3, p. ii, doi. 10.1093/nar/gks085
Publication type:: Article

Molecular architecture of a multifunctional MCM complex.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 3, p. 1366, doi. 10.1093/nar/gkr831

By:

Sanchez-Berrondo, June;
Mesa, Pablo;
Ibarra, Arkaitz;
Martínez-Jiménez, Maria I.;
Blanco, Luis;
Méndez, Juan;
Boskovic, Jasminka;
Montoya, Guillermo

Publication type:

Article

Topological constraints impair RNA polymerase II transcription and causes instability of plasmid-borne convergent genes.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 3, p. 1050, doi. 10.1093/nar/gkr840

By:

García-Rubio, María L.;
Aguilera, Andrés

Publication type:

Article

N- and C-terminal Upf1 phosphorylations create binding platforms for SMG-6 and SMG-5:SMG-7 during NMD.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 3, p. 1251, doi. 10.1093/nar/gkr791

By:

Okada-Katsuhata, Yukiko;
Yamashita, Akio;
Kutsuzawa, Kei;
Izumi, Natsuko;
Hirahara, Fumiki;
Ohno, Shigeo

Publication type:

Article

An essential role for Clp1 in assembly of polyadenylation complex CF IA and Pol II transcription termination.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 3, p. 1226, doi. 10.1093/nar/gkr800

By:

Haddad, Raphaël;
Maurice, Frédérique;
Viphakone, Nicolas;
Voisinet-Hakil, Florence;
Fribourg, Sébastien;
Minvielle-Sébastia, Lionel

Publication type:

Article

Opposing effects of DNA on proteolysis of a replication initiator.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 3, p. 1148, doi. 10.1093/nar/gkr813

By:

Kubik, Slawomir;
Wegrzyn, Katarzyna;
Pierechod, Marcin;
Konieczny, Igor

Publication type:

Article

Interaction of PABPC1 with the translation initiation complex is critical to the NMD resistance of AUG-proximal nonsense mutations.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 3, p. 1160, doi. 10.1093/nar/gkr820

By:

Peixeiro, Isabel;
Inácio, Ângela;
Barbosa, Cristina;
Silva, Ana Luísa;
Liebhaber, Stephen A.;
Romão, Luísa

Publication type:

Article

Illumina mate-paired DNA sequencing-library preparation using Cre-Lox recombination.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 3, p. e24, doi. 10.1093/nar/gkr1000

By:

Van Nieuwerburgh, Filip;
Thompson, Ryan C.;
Ledesma, Jessica;
Deforce, Dieter;
Gaasterland, Terry;
Ordoukhanian, Phillip;
Head, Steven R.

Publication type:

Article

Luminescent detection of DNA-binding proteins.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 3, p. 941, doi. 10.1093/nar/gkr763

By:

Leung, Chung-Hang;
Chan, Daniel Shiu-Hin;
He, Hong-Zhang;
Cheng, Zhen;
Yang, Hui;
Ma, Dik-Lung

Publication type:

Article

The RNA recognition motif protein RBM11 is a novel tissue-specific splicing regulator.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 3, p. 1021, doi. 10.1093/nar/gkr819

By:

Pedrotti, Simona;
Busà, Roberta;
Compagnucci, Claudia;
Sette, Claudio

Publication type:

Article

Three critical hydrogen bonds determine the catalytic activity of the Diels–Alderase ribozyme.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 3, p. 1318, doi. 10.1093/nar/gkr812

By:

Kraut, Stefanie;
Bebenroth, Dirk;
Nierth, Alexander;
Kobitski, Andrei Y.;
Nienhaus, G. Ulrich;
Jäschke, Andres

Publication type:

Article

Overcoming natural replication barriers: differential helicase requirements.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 3, p. 1091, doi. 10.1093/nar/gkr836

By:

Anand, Ranjith P.;
Shah, Kartik A.;
Niu, Hengyao;
Sung, Patrick;
Mirkin, Sergei M.;
Freudenreich, Catherine H.

Publication type:

Article

Construction of repeat-free fluorescence in situ hybridization probes.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 3, p. e20, doi. 10.1093/nar/gkr1123

By:

Swennenhuis, Joost F.;
Foulk, Brad;
Coumans, Frank A.W.;
Terstappen, Leon W. M. M.

Publication type:

Article

Experimental identification and analysis of macronuclear non-coding RNAs from the ciliate Tetrahymena thermophila.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 3, p. 1267, doi. 10.1093/nar/gkr792

By:

Andersen, Kasper L.;
Nielsen, Henrik

Publication type:

Article

Phosphorylation of SRSF1 is modulated by replicational stress.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 3, p. 1106, doi. 10.1093/nar/gkr837

By:

Leva, Valentina;
Giuliano, Serena;
Bardoni, Anna;
Camerini, Serena;
Crescenzi, Marco;
Lisa, Antonella;
Biamonti, Giuseppe;
Montecucco, Alessandra

Publication type:

Article

Sensitive RNA detection by combining three-way junction formation and primer generation-rolling circle amplification.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 3, p. e22, doi. 10.1093/nar/gkr909

By:

Murakami, Taku;
Sumaoka, Jun;
Komiyama, Makoto

Publication type:

Article

Clustering RNA structural motifs in ribosomal RNAs using secondary structural alignment.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 3, p. 1307, doi. 10.1093/nar/gkr804

By:

Zhong, Cuncong;
Zhang, Shaojie

Publication type:

Article

A TetR-like regulator broadly affects the expressions of diverse genes in Mycobacterium smegmatis.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 3, p. 1009, doi. 10.1093/nar/gkr830

By:

Yang, Min;
Gao, Chunhui;
Cui, Tao;
An, Jingning;
He, Zheng-Guo

Publication type:

Article

The acetylation of transcription factor HBP1 by p300/CBP enhances p16INK4A expression.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 3, p. 981, doi. 10.1093/nar/gkr818

By:

Wang, Weibin;
Pan, Kewu;
Chen, Yifan;
Huang, Chunyin;
Zhang, Xiaowei

Publication type:

Article

Recognition of prokaryotic promoters based on a novel variable-window Z-curve method.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 3, p. 963, doi. 10.1093/nar/gkr795

By:

Song, Kai

Publication type:

Article

Sequence–structure relationships in yeast mRNAs.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 3, p. 956, doi. 10.1093/nar/gkr790

By:

Chursov, Andrey;
Walter, Mathias C.;
Schmidt, Thorsten;
Mironov, Andrei;
Shneider, Alexander;
Frishman, Dmitrij

Publication type:

Article

Genome sequencing of the lizard parasite Leishmania tarentolae reveals loss of genes associated to the intracellular stage of human pathogenic species.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 3, p. 1131, doi. 10.1093/nar/gkr834

By:

Raymond, Frédéric;
Boisvert, Sébastien;
Roy, Gaétan;
Ritt, Jean-François;
Légaré, Danielle;
Isnard, Amandine;
Stanke, Mario;
Olivier, Martin;
Tremblay, Michel J.;
Papadopoulou, Barbara;
Ouellette, Marc;
Corbeil, Jacques

Publication type:

Article

Tight cooperation between Mot1p and NC2β in regulating genome-wide transcription, repression of transcription following heat shock induction and genetic interaction with SAGA.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 3, p. 996, doi. 10.1093/nar/gkr784

By:

Spedale, Gianpiero;
Meddens, Claartje A.;
Koster, Maria J. E.;
Ko, Cheuk W.;
van Hooff, Sander R.;
Holstege, Frank C. P.;
Timmers, H. Th. Marc;
Pijnappel, W. W. M. Pim

Publication type:

Article

The interaction of Pcf11 and Clp1 is needed for mRNA 3′-end formation and is modulated by amino acids in the ATP-binding site.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 3, p. 1214, doi. 10.1093/nar/gkr801

By:

Ghazy, Mohamed A.;
Gordon, James M. B.;
Lee, Susan D.;
Singh, Badri Nath;
Bohm, Andrew;
Hampsey, Michael;
Moore, Claire

Publication type:

Article

NTRFinder: a software tool to find nested tandem repeats.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 3, p. e17, doi. 10.1093/nar/gkr1070

By:

Matroud, Atheer A.;
Hendy, M. D.;
Tuffley, C. P.

Publication type:

Article

Subscriptions.

Published in:: Nucleic Acids Research, 2012, v. 40, n. 3, p. iii, doi. 10.1093/nar/gks129
Publication type:: Article

Unraveling the structural complexity in a single-stranded RNA tail: implications for efficient ligand binding in the prequeuosine riboswitch.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 3, p. 1345, doi. 10.1093/nar/gkr833

By:

Eichhorn, Catherine D.;
Feng, Jun;
Suddala, Krishna C.;
Walter, Nils G.;
Brooks, Charles L.;
Al-Hashimi, Hashim M.

Publication type:

Article

Identification of essential and non-essential single-stranded DNA-binding proteins in a model archaeal organism.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 3, p. 1077, doi. 10.1093/nar/gkr838

By:

Skowyra, Agnieszka;
MacNeill, Stuart A.

Publication type:

Article

An iterative network partition algorithm for accurate identification of dense network modules.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 3, p. e18, doi. 10.1093/nar/gkr1103

By:

Sun, Siqi;
Dong, Xinran;
Fu, Yao;
Tian, Weidong

Publication type:

Article

Dual targeting of isoleucyl-tRNA synthetase in Trypanosoma brucei is mediated through alternative trans-splicing.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 3, p. 1299, doi. 10.1093/nar/gkr794

By:

Rettig, Jochen;
Wang, Yimu;
Schneider, André;
Ochsenreiter, Torsten

Publication type:

Article

Yin Yang 1 contains G-quadruplex structures in its promoter and 5′-UTR and its expression is modulated by G4 resolvase 1.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 3, p. 1033, doi. 10.1093/nar/gkr849

By:

Huang, Weiwei;
Smaldino, Philip J.;
Zhang, Qiang;
Miller, Lance D.;
Cao, Paul;
Stadelman, Kristin;
Wan, Meimei;
Giri, Banabihari;
Lei, Ming;
Nagamine, Yoshikuni;
Vaughn, James P.;
Akman, Steven A.;
Sui, Guangchao

Publication type:

Article

A versatile element for gene addition in bacterial chromosomes.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 3, p. e19, doi. 10.1093/nar/gkr1085

By:

Sibley, Marion H.;
Raleigh, Elisabeth A.

Publication type:

Article

Characterization of the 6-methyl isoxanthopterin (6-MI) base analog dimer, a spectroscopic probe for monitoring guanine base conformations at specific sites in nucleic acids.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 3, p. 1191, doi. 10.1093/nar/gkr858

By:

Datta, Kausiki;
Johnson, Neil P.;
Villani, Giuseppe;
Marcus, Andrew H.;
von Hippel, Peter H.

Publication type:

Article

Expanding the action of duplex RNAs into the nucleus: redirecting alternative splicing.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 3, p. 1240, doi. 10.1093/nar/gkr780

By:

Liu, Jing;
Hu, Jiaxin;
Corey, David R.

Publication type:

Article

GeoPCA: a new tool for multivariate analysis of dihedral angles based on principal component geodesics.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 3, p. e25, doi. 10.1093/nar/gkr1069

By:

Sargsyan, Karen;
Wright, Jon;
Lim, Carmay

Publication type:

Article

A model for Escherichia coli chromosome packaging supports transcription factor-induced DNA domain formation.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 3, p. 972, doi. 10.1093/nar/gkr779

By:

Fritsche, Miriam;
Li, Songling;
Heermann, Dieter W.;
Wiggins, Paul A.

Publication type:

Article

Illuminating the reaction pathway of the FokI restriction endonuclease by fluorescence resonance energy transfer.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 3, p. 1203, doi. 10.1093/nar/gkr809

By:

Pernstich, Christian;
Halford, Stephen E.

Publication type:

Article

Molecular basis of differential target regulation by miR-96 and miR-182: the Glypican-3 as a model.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 3, p. 1356, doi. 10.1093/nar/gkr843

By:

Jalvy-Delvaille, Sandra;
Maurel, Marion;
Majo, Vanessa;
Pierre, Nathalie;
Chabas, Sandrine;
Combe, Chantal;
Rosenbaum, Jean;
Sagliocco, Francis;
Grosset, Christophe F.

Publication type:

Article

Translesion-synthesis DNA polymerases participate in replication of the telomeres in Streptomyces.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 3, p. 1118, doi. 10.1093/nar/gkr856

By:

Tsai, Hsiu-Hui;
Shu, Hung-Wei;
Yang, Chien-Chin;
Chen, Carton W.

Publication type:

Article

Analysis of the interaction with the hepatitis C virus mRNA reveals an alternative mode of RNA recognition by the human La protein.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 3, p. 1381, doi. 10.1093/nar/gkr890

By:

Martino, Luigi;
Pennell, Simon;
Kelly, Geoff;
Bui, Tam T. T.;
Kotik-Kogan, Olga;
Smerdon, Stephen J.;
Drake, Alex F.;
Curry, Stephen;
Conte, Maria R.

Publication type:

Article

Nucleic Acids Research.

Published in:: Nucleic Acids Research, 2012, v. 40, n. 3, p. i, doi. 10.1093/nar/gks107
Publication type:: Article

Isolation of homozygous mutant mouse embryonic stem cells using a dual selection system.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 3, p. e21, doi. 10.1093/nar/gkr908

By:

Huang, Yue;
Pettitt, Stephen J.;
Guo, Ge;
Liu, Guang;
Li, Meng Amy;
Yang, Fengtang;
Bradley, Allan

Publication type:

Article

Error correction of microchip synthesized genes using Surveyor nuclease.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 3, p. e23, doi. 10.1093/nar/gkr887

By:

Saaem, Ishtiaq;
Ma, Siying;
Quan, Jiayuan;
Tian, Jingdong

Publication type:

Article

The RNA helicase Dhh1p cooperates with Rbp1p to promote porin mRNA decay via its non-conserved C-terminal domain.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 3, p. 1331, doi. 10.1093/nar/gkr803

By:

Chang, Lin-Chun;
Lee, Fang-Jen S.

Publication type:

Article

Identification and molecular characterization of an Alba-family protein from human malaria parasite Plasmodium falciparum.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 3, p. 1174, doi. 10.1093/nar/gkr821

By:

Goyal, Manish;
Alam, Athar;
Iqbal, Mohd Shameel;
Dey, Sumanta;
Bindu, Samik;
Pal, Chinmay;
Banerjee, Anindyajit;
Chakrabarti, Saikat;
Bandyopadhyay, Uday

Publication type:

Article