Works matching IS 03051048 AND DT 2012 AND VI 40 AND IP 2

Results: 50

GenomeView: a next-generation genome browser.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 2, p. e12, doi. 10.1093/nar/gkr995

By:

Abeel, Thomas;
Van Parys, Thomas;
Saeys, Yvan;
Galagan, James;
Van de Peer, Yves

Publication type:

Article

Subscriptions.

Published in:: Nucleic Acids Research, 2012, v. 40, n. 2, p. iii, doi. 10.1093/nar/gks018
Publication type:: Article

Regulation of u-PAR gene expression by H2A.Z is modulated by the MEK–ERK/AP-1 pathway.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 2, p. 600, doi. 10.1093/nar/gkr725

By:

Chauhan, Santosh;
Boyd, Douglas D.

Publication type:

Article

A dual role of BRCA1 in two distinct homologous recombination mediated repair in response to replication arrest.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 2, p. 726, doi. 10.1093/nar/gkr748

By:

Feng, Zhihui;
Zhang, Junran

Publication type:

Article

MetaQC: objective quality control and inclusion/exclusion criteria for genomic meta-analysis.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 2, p. e15, doi. 10.1093/nar/gkr1071

By:

Kang, Dongwan D.;
Sibille, Etienne;
Kaminski, Naftali;
Tseng, George C.

Publication type:

Article

Single-nucleotide base excision repair DNA polymerase activity in C. elegans in the absence of DNA polymerase β.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 2, p. 670, doi. 10.1093/nar/gkr727

By:

Asagoshi, Kenjiro;
Lehmann, Wade;
Braithwaite, Elena K.;
Santana-Santos, Lucas;
Prasad, Rajendra;
Freedman, Jonathan H.;
Van Houten, Bennett;
Wilson, Samuel H.

Publication type:

Article

REV1 and polymerase ζ facilitate homologous recombination repair.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 2, p. 682, doi. 10.1093/nar/gkr769

By:

Sharma, Shilpy;
Hicks, J. Kevin;
Chute, Colleen L.;
Brennan, Julia R.;
Ahn, Joon-Young;
Glover, Thomas W.;
Canman, Christine E.

Publication type:

Article

Enhanced analysis of real-time PCR data by using a variable efficiency model: FPK-PCR.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 2, p. e10, doi. 10.1093/nar/gkr775

By:

Lievens, Antoon;
Van Aelst, S.;
Van den Bulcke, M.;
Goetghebeur, E.

Publication type:

Article

Retroviral GAG proteins recruit AGO2 on viral RNAs without affecting RNA accumulation and translation.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 2, p. 775, doi. 10.1093/nar/gkr762

By:

Bouttier, Manuella;
Saumet, Anne;
Peter, Marion;
Courgnaud, Valérie;
Schmidt, Ute;
Cazevieille, Chantal;
Bertrand, Edouard;
Lecellier, Charles-Henri

Publication type:

Article

The structural characterization of a prophage-encoded extracellular DNase from Streptococcus pyogenes.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 2, p. 928, doi. 10.1093/nar/gkr789

By:

Korczynska, Justyna E.;
Turkenburg, Johan P.;
Taylor, Edward J.

Publication type:

Article

Structural insights to the metal specificity of an archaeal member of the LigD 3′-phosphoesterase DNA repair enzyme family.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 2, p. 828, doi. 10.1093/nar/gkr767

By:

Das, Ushati;
Smith, Paul;
Shuman, Stewart

Publication type:

Article

Polymerization and nucleic acid-binding properties of human L1 ORF1 protein.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 2, p. 813, doi. 10.1093/nar/gkr728

By:

Callahan, Kathryn E.;
Hickman, Alison B.;
Jones, Charles E.;
Ghirlando, Rodolfo;
Furano, Anthony V.

Publication type:

Article

Safeguarding genome integrity: the checkpoint kinases ATR, CHK1 and WEE1 restrain CDK activity during normal DNA replication.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 2, p. 477, doi. 10.1093/nar/gkr697

By:

Sørensen, Claus Storgaard;
Syljuåsen, Randi G.

Publication type:

Article

Phosphorylation of bamboo mosaic virus satellite RNA (satBaMV)-encoded protein P20 downregulates the formation of satBaMV-P20 ribonucleoprotein complex.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 2, p. 638, doi. 10.1093/nar/gkr705

By:

Vijayapalani, Paramasivan;
Chen, Jeff Chien-Fu;
Liou, Ming-Ru;
Chen, Hsin-Chuan;
Hsu, Yau-Heiu;
Lin, Na-Sheng

Publication type:

Article

RNA-binding protein HuR autoregulates its expression by promoting alternative polyadenylation site usage.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 2, p. 787, doi. 10.1093/nar/gkr783

By:

Dai, Weijun;
Zhang, Gen;
Makeyev, Eugene V.

Publication type:

Article

Hepato-specific microRNA-122 facilitates accumulation of newly synthesized miRNA through regulating PRKRA.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 2, p. 884, doi. 10.1093/nar/gkr715

By:

Li, Shuai;
Zhu, Juanjuan;
Fu, Hanjiang;
Wan, Jing;
Hu, Zheng;
Liu, Shanshan;
Li, Jie;
Tie, Yi;
Xing, Ruiyun;
Zhu, Jie;
Sun, Zhixian;
Zheng, Xiaofei

Publication type:

Article

Function and disruption of DNA Methyltransferase 3a cooperative DNA binding and nucleoprotein filament formation.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 2, p. 569, doi. 10.1093/nar/gkr753

By:

Rajavelu, Arumugam;
Jurkowska, Renata Z.;
Fritz, Jürgen;
Jeltsch, Albert

Publication type:

Article

Novel reporter systems for facile evaluation of I-SceI-mediated genome editing.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 2, p. e14, doi. 10.1093/nar/gkr897

By:

Muñoz, Nina M.;
Beard, Brian C.;
Ryu, Byoung Y.;
Luche, Ralf M.;
Trobridge, Grant D.;
Rawlings, David J.;
Scharenberg, Andrew M.;
Kiem, Hans-Peter

Publication type:

Article

The human translation initiation multi-factor complex promotes methionyl-tRNAi binding to the 40S ribosomal subunit.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 2, p. 905, doi. 10.1093/nar/gkr772

By:

Sokabe, Masaaki;
Fraser, Christopher S.;
Hershey, John W. B.

Publication type:

Article

RDR6-mediated synthesis of complementary RNA is terminated by miRNA stably bound to template RNA.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 2, p. 594, doi. 10.1093/nar/gkr760

By:

Rajeswaran, Rajendran;
Pooggin, Mikhail M.

Publication type:

Article

Predicting coaxial helical stacking in RNA junctions.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 2, p. 487, doi. 10.1093/nar/gkr629

By:

Laing, Christian;
Wen, Dongrong;
Wang, Jason T. L.;
Schlick, Tamar

Publication type:

Article

In vitro quantification of specific microRNA using molecular beacons.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 2, p. e13, doi. 10.1093/nar/gkr1016

By:

Baker, Meredith B.;
Bao, Gang;
Searles, Charles D.

Publication type:

Article

Avoiding cytotoxicity of transposases by dose-controlled mRNA delivery.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 2, p. 939, doi. 10.1093/nar/gkr1266

By:

Galla, Melanie;
Schambach, Axel;
Falk, Christine S.;
Maetzig, Tobias;
Kuehle, Johannes;
Lange, Kathrin;
Zychlinski, Daniela;
Heinz, Niels;
Brugman, Martijn H.;
Göhring, Gudrun;
Izsvák, Zsuzsanna;
Ivics, Zoltán;
Baum, Christopher

Publication type:

Article

The tail-module of yeast Mediator complex is required for telomere heterochromatin maintenance.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 2, p. 581, doi. 10.1093/nar/gkr757

By:

Peng, Jing;
Zhou, Jin-Qiu

Publication type:

Article

A single zinc finger optimizes the DNA interactions of the nucleocapsid protein of the yeast retrotransposon Ty3.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 2, p. 751, doi. 10.1093/nar/gkr726

By:

Chaurasiya, Kathy R.;
Geertsema, Hylkje;
Cristofari, Gaël;
Darlix, Jean-Luc;
Williams, Mark C.

Publication type:

Article

ATP driven structural changes of the bacterial Mre11:Rad50 catalytic head complex.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 2, p. 914, doi. 10.1093/nar/gkr749

By:

Möckel, Carolin;
Lammens, Katja;
Schele, Alexandra;
Hopfner, Karl-Peter

Publication type:

Article

Quantitative model of R-loop forming structures reveals a novel level of RNA–DNA interactome complexity.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 2, p. e16, doi. 10.1093/nar/gkr1075

By:

Wongsurawat, Thidathip;
Jenjaroenpun, Piroon;
Kwoh, Chee Keong;
Kuznetsov, Vladimir

Publication type:

Article

Joint scaling laws in functional and evolutionary categories in prokaryotic genomes.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 2, p. 530, doi. 10.1093/nar/gkr711

By:

Grilli, J.;
Bassetti, B.;
Maslov, S.;
Cosentino Lagomarsino, M.

Publication type:

Article

Ubiquitin ligase UBR3 regulates cellular levels of the essential DNA repair protein APE1 and is required for genome stability.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 2, p. 701, doi. 10.1093/nar/gkr744

By:

Meisenberg, Cornelia;
Tait, Phillip S.;
Dianova, Irina I.;
Wright, Katherine;
Edelmann, Mariola J.;
Ternette, Nicola;
Tasaki, Takafumi;
Kessler, Benedikt M.;
Parsons, Jason L.;
Tae Kwon, Yong;
Dianov, Grigory L.

Publication type:

Article

Saccharomyces cerevisiae Ngl3p is an active 3′–5′ exonuclease with a specificity towards poly-A RNA reminiscent of cellular deadenylases.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 2, p. 837, doi. 10.1093/nar/gkr782

By:

Feddersen, Ane;
Dedic, Emil;
Poulsen, Esben G.;
Schmid, Manfred;
Van, Lan Bich;
Jensen, Torben Heick;
Brodersen, Ditlev E.

Publication type:

Article

MiR-145 directly targets p70S6K1 in cancer cells to inhibit tumor growth and angiogenesis.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 2, p. 761, doi. 10.1093/nar/gkr730

By:

Xu, Qing;
Liu, Ling-Zhi;
Qian, Xu;
Chen, Qi;
Jiang, Yue;
Li, Dan;
Lai, Lihui;
Jiang, Bing-Hua

Publication type:

Article

Regulation of conditional gene expression by coupled transcription repression and RNA degradation.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 2, p. 871, doi. 10.1093/nar/gkr759

By:

Lavoie, Mathieu;
Ge, Dongling;
Abou Elela, Sherif

Publication type:

Article

TFIIH is an elongation factor of RNA polymerase I.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 2, p. 650, doi. 10.1093/nar/gkr746

By:

Assfalg, Robin;
Lebedev, Anton;
Gonzalez, Omar Garcia;
Schelling, Adrian;
Koch, Sylvia;
Iben, Sebastian

Publication type:

Article

Genome-wide prediction and analysis of human chromatin boundary elements.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 2, p. 511, doi. 10.1093/nar/gkr750

By:

Wang, Jianrong;
Lunyak, Victoria V.;
Jordan, I. King

Publication type:

Article

Creating highly specific nucleases by fusion of active restriction endonucleases and catalytically inactive homing endonucleases.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 2, p. 847, doi. 10.1093/nar/gkr788

By:

Fonfara, Ines;
Curth, Ute;
Pingoud, Alfred;
Wende, Wolfgang

Publication type:

Article

Nucleic Acids Research - Editorial Board.

Published in:: Nucleic Acids Research, 2012, v. 40, n. 2, p. ii, doi. 10.1093/nar/gks015
Publication type:: Article

An integrative genomic approach identifies p73 and p63 as activators of miR-200 microRNA family transcription.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 2, p. 499, doi. 10.1093/nar/gkr731

By:

Knouf, Emily C.;
Garg, Kavita;
Arroyo, Jason D.;
Correa, Yesenia;
Sarkar, Deepayan;
Parkin, Rachael K.;
Wurz, Kaitlyn;
O’Briant, Kathy C.;
Godwin, Andrew K.;
Urban, Nicole D.;
Ruzzo, Walter L.;
Gentleman, Robert;
Drescher, Charles W.;
Swisher, Elizabeth M.;
Tewari, Muneesh

Publication type:

Article

Nucleic Acids Research.

Published in:: Nucleic Acids Research, 2012, v. 40, n. 2, p. i, doi. 10.1093/nar/gks016
Publication type:: Article

Direct structural analysis of modified RNA by fluorescent in-line probing.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 2, p. 861, doi. 10.1093/nar/gkr733

By:

Strauss, Benjamin;
Nierth, Alexander;
Singer, Marco;
Jäschke, Andres

Publication type:

Article

i-ADHoRe 3.0—fast and sensitive detection of genomic homology in extremely large data sets.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 2, p. e11, doi. 10.1093/nar/gkr955

By:

Proost, Sebastian;
Fostier, Jan;
De Witte, Dieter;
Dhoedt, Bart;
Demeester, Piet;
Van de Peer, Yves;
Vandepoele, Klaas

Publication type:

Article

The human histone chaperone sNASP interacts with linker and core histones through distinct mechanisms.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 2, p. 660, doi. 10.1093/nar/gkr781

By:

Wang, Huanyu;
Ge, Zhongqi;
Walsh, Scott T. R.;
Parthun, Mark R.

Publication type:

Article

Nucleosome occupancy reveals regulatory elements of the CFTR promoter.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 2, p. 625, doi. 10.1093/nar/gkr754

By:

Ott, Christopher J.;
Bischof, Jared M.;
Unti, Kristen M.;
Gillen, Austin E.;
Leir, Shih-Hsing;
Harris, Ann

Publication type:

Article

Transcriptional activation by mitochondrial transcription factor A involves preferential distortion of promoter DNA.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 2, p. 614, doi. 10.1093/nar/gkr787

By:

Malarkey, Christopher S.;
Bestwick, Megan;
Kuhlwilm, Jane E.;
Shadel, Gerald S.;
Churchill, Mair E. A.

Publication type:

Article

Untwisting of the DNA helix stimulates the endonuclease activity of Bacillus subtilis Nth at AP sites.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 2, p. 739, doi. 10.1093/nar/gkr785

By:

Collier, Christopher;
Machón, Cristina;
Briggs, Geoff S.;
Smits, Wiep Klaas;
Soultanas, Panos

Publication type:

Article

IRES-mediated translation of cellular messenger RNA operates in eIF2α- independent manner during stress.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 2, p. 541, doi. 10.1093/nar/gkr701

By:

Thakor, Nehal;
Holcik, Martin

Publication type:

Article

Modeling the relative relationship of transcription factor binding and histone modifications to gene expression levels in mouse embryonic stem cells.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 2, p. 553, doi. 10.1093/nar/gkr752

By:

Cheng, Chao;
Gerstein, Mark

Publication type:

Article

ATP-regulated interactions between P1 ParA, ParB and non-specific DNA that are stabilized by the plasmid partition site, parS.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 2, p. 801, doi. 10.1093/nar/gkr747

By:

Havey, James C.;
Vecchiarelli, Anthony G.;
Funnell, Barbara E.

Publication type:

Article

New insights into the fundamental role of topological constraints as a determinant of two-way junction conformation.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 2, p. 892, doi. 10.1093/nar/gkr751

By:

Mustoe, Anthony M.;
Bailor, Maximillian H.;
Teixeira, Robert M.;
Brooks, Charles L.;
Al-Hashimi, Hashim M.

Publication type:

Article

Human telomerase acts as a hTR-independent reverse transcriptase in mitochondria.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 2, p. 712, doi. 10.1093/nar/gkr758

By:

Sharma, Nilesh K.;
Reyes, Aurelio;
Green, Paula;
Caron, Matthieu J.;
Bonini, Marcelo G.;
Gordon, Donna M.;
Holt, Ian J.;
Santos, Janine Hertzog

Publication type:

Article

Base excision repair of 8-oxoG in dinucleosomes.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 2, p. 692, doi. 10.1093/nar/gkr761

By:

Menoni, Hervé;
Shukla, Manu Shubhdarshan;
Gerson, Véronique;
Dimitrov, Stefan;
Angelov, Dimitar

Publication type:

Article