Works matching IS 03051048 AND DT 2012 AND VI 40 AND IP 4

Results: 49

The MOF-containing NSL complex associates globally with housekeeping genes, but activates only a defined subset.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 4, p. 1509, doi. 10.1093/nar/gkr869

By:

Feller, Christian;
Prestel, Matthias;
Hartmann, Holger;
Straub, Tobias;
Söding, Johannes;
Becker, Peter B.

Publication type:

Article

Statistical evaluation of improvement in RNA secondary structure prediction.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 4, p. e26, doi. 10.1093/nar/gkr1081

By:

Xu, Zhenjiang;
Almudevar, Anthony;
Mathews, David H.

Publication type:

Article

DNA and nucleosomes direct distinct folding of a linker histone H1 C-terminal domain.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 4, p. 1475, doi. 10.1093/nar/gkr866

By:

Fang, He;
Clark, David J.;
Hayes, Jeffrey J.

Publication type:

Article

Direct evidence of nuclear Argonaute distribution during transcriptional silencing links the actin cytoskeleton to nuclear RNAi machinery in human cells.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 4, p. 1579, doi. 10.1093/nar/gkr891

By:

Ahlenstiel, Chantelle L.;
Lim, Heidi G. W.;
Cooper, David A.;
Ishida, Takaomi;
Kelleher, Anthony D.;
Suzuki, Kazuo

Publication type:

Article

Strong epigenetic similarity between maize centromeric and pericentromeric regions at the level of small RNAs, DNA methylation and H3 chromatin modifications.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 4, p. 1550, doi. 10.1093/nar/gkr862

By:

Gent, Jonathan I.;
Dong, Yuzhu;
Jiang, Jiming;
Dawe, R. Kelly

Publication type:

Article

Strand antagonism in RNAi: an explanation of differences in potency between intracellularly expressed siRNA and shRNA.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 4, p. 1797, doi. 10.1093/nar/gkr927

By:

Jin, Xin;
Sun, Tingting;
Zhao, Chuanke;
Zheng, Yongxiang;
Zhang, Yufan;
Cai, Weijing;
He, Qiuchen;
Taira, Kaz;
Zhang, Lihe;
Zhou, Demin

Publication type:

Article

XNP/dATRX interacts with DREF in the chromatin to regulate gene expression.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 4, p. 1460, doi. 10.1093/nar/gkr865

By:

Valadez-Graham, Viviana;
Yoshioka, Yasuhide;
Velazquez, Oscar;
Kawamori, Akihito;
Vázquez, Martha;
Neumann, Adina;
Yamaguchi, Masamitsu;
Zurita, Mario

Publication type:

Article

Beyond translesion synthesis: polymerase κ fidelity as a potential determinant of microsatellite stability.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 4, p. 1636, doi. 10.1093/nar/gkr889

By:

Hile, Suzanne E.;
Wang, Xiaoxiao;
Lee, Marietta Y. W. T.;
Eckert, Kristin A.

Publication type:

Article

Upregulation of Cyclin B1 by miRNA and its implications in cancer.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 4, p. 1695, doi. 10.1093/nar/gkr934

By:

Huang, Vera;
Place, Robert F.;
Portnoy, Victoria;
Wang, Ji;
Qi, Zhongxia;
Jia, Zhejun;
Yu, Angela;
Shuman, Marc;
Yu, Jingwei;
Li, Long-Cheng

Publication type:

Article

GReEn: a tool for efficient compression of genome resequencing data.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 4, p. e27, doi. 10.1093/nar/gkr1124

By:

Pinho, Armando J.;
Pratas, Diogo;
Garcia, Sara P.

Publication type:

Article

RNA self-cleavage activated by ultraviolet light-induced oxidation.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 4, p. 1748, doi. 10.1093/nar/gkr822

By:

Ariza-Mateos, Ascensión;
Prieto-Vega, Samuel;
Díaz-Toledano, Rosa;
Birk, Alex;
Szeto, Hazel;
Mena, Ignacio;
Berzal-Herranz, Alfredo;
Gómez, Jordi

Publication type:

Article

A non-canonical DNA structure is a binding motif for the transcription factor SP1 in vitro.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 4, p. 1499, doi. 10.1093/nar/gkr882

By:

Raiber, Eun-Ang;
Kranaster, Ramon;
Lam, Enid;
Nikan, Mehran;
Balasubramanian, Shankar

Publication type:

Article

Validation of kinetics similarity in qPCR.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 4, p. 1395, doi. 10.1093/nar/gkr778

By:

Bar, Tzachi;
Kubista, Mikael;
Tichopad, Ales

Publication type:

Article

Epigenetic regulation of human cis-natural antisense transcripts.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 4, p. 1438, doi. 10.1093/nar/gkr1010

By:

Conley, Andrew B.;
King Jordan, I.

Publication type:

Article

Interferon gamma (IFN-γ) disrupts energy expenditure and metabolic homeostasis by suppressing SIRT1 transcription.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 4, p. 1609, doi. 10.1093/nar/gkr984

By:

Li, Ping;
Zhao, Yuhao;
Wu, Xiaoyan;
Xia, Minjie;
Fang, Mingming;
Iwasaki, Yasumasa;
Sha, Jiahao;
Chen, Qi;
Xu, Yong;
Shen, Aiguo

Publication type:

Article

Nucleic Acids Research - Editorial Board.

Published in:: Nucleic Acids Research, 2012, v. 40, n. 4, p. ii, doi. 10.1093/nar/gks086
Publication type:: Article

The SARS-coronavirus nsp7+nsp8 complex is a unique multimeric RNA polymerase capable of both de novo initiation and primer extension.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 4, p. 1737, doi. 10.1093/nar/gkr893

By:

te Velthuis, Aartjan J.W.;
van den Worm, Sjoerd H. E.;
Snijder, Eric J.

Publication type:

Article

Subscriptions.

Published in:: Nucleic Acids Research, 2012, v. 40, n. 4, p. iii, doi. 10.1093/nar/gks130
Publication type:: Article

Bio-CAP: a versatile and highly sensitive technique to purify and characterise regions of non-methylated DNA.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 4, p. e32, doi. 10.1093/nar/gkr1207

By:

Blackledge, Neil P.;
Long, Hannah K.;
Zhou, Jin C.;
Kriaucionis, Skirmantas;
Patient, Roger;
Klose, Robert J.

Publication type:

Article

Crystal structure of a heterodimer of editosome interaction proteins in complex with two copies of a cross-reacting nanobody.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 4, p. 1828, doi. 10.1093/nar/gkr867

By:

Park, Young-Jun;
Pardon, Els;
Wu, Meiting;
Steyaert, Jan;
Hol, Wim G. J.

Publication type:

Article

Developmental regulation of N-terminal H2B methylation in Drosophila melanogaster.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 4, p. 1536, doi. 10.1093/nar/gkr935

By:

Villar-Garea, Ana;
Forne, Ignasi;
Vetter, Irene;
Kremmer, Elisabeth;
Thomae, Andreas;
Imhof, Axel

Publication type:

Article

YY1 associates with the macrosatellite DXZ4 on the inactive X chromosome and binds with CTCF to a hypomethylated form in some male carcinomas.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 4, p. 1596, doi. 10.1093/nar/gkr964

By:

Moseley, Shawn C.;
Rizkallah, Raed;
Tremblay, Deanna C.;
Anderson, Blair R.;
Hurt, Myra M.;
Chadwick, Brian P.

Publication type:

Article

An unstructured 5′-coding region of the prfA mRNA is required for efficient translation.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 4, p. 1818, doi. 10.1093/nar/gkr850

By:

Loh, Edmund;
Memarpour, Faranak;
Vaitkevicius, Karolis;
Kallipolitis, Birgitte H.;
Johansson, Jörgen;
Sondén, Berit

Publication type:

Article

pre-miRNA profiles obtained through application of locked nucleic acids and deep sequencing reveals complex 5′/3′ arm variation including concomitant cleavage and polyuridylation patterns.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 4, p. 1424, doi. 10.1093/nar/gkr903

By:

Burroughs, A. Maxwell;
Kawano, Mitsuoki;
Ando, Yoshinari;
Daub, Carsten O.;
Hayashizaki, Yoshihide

Publication type:

Article

Characterization of DNA methyltransferase specificities using single-molecule, real-time DNA sequencing.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 4, p. e29, doi. 10.1093/nar/gkr1146

By:

Clark, Tyson A.;
Murray, Iain A.;
Morgan, Richard D.;
Kislyuk, Andrey O.;
Spittle, Kristi E.;
Boitano, Matthew;
Fomenkov, Alexey;
Roberts, Richard J.;
Korlach, Jonas

Publication type:

Article

Tissue-specific alternative polyadenylation at the imprinted gene Mest regulates allelic usage at Copg2.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 4, p. 1523, doi. 10.1093/nar/gkr871

By:

MacIsaac, Julia L.;
Bogutz, Aaron B.;
Morrissy, A. Sorana;
Lefebvre, Louis

Publication type:

Article

The non-autonomous retrotransposon SVA is trans-mobilized by the human LINE-1 protein machinery.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 4, p. 1666, doi. 10.1093/nar/gkr863

By:

Raiz, Julija;
Damert, Annette;
Chira, Sergiu;
Held, Ulrike;
Klawitter, Sabine;
Hamdorf, Matthias;
Löwer, Johannes;
Strätling, Wolf H.;
Löwer, Roswitha;
Schumann, Gerald G.

Publication type:

Article

XRCC4's interaction with XLF is required for coding (but not signal) end joining.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 4, p. 1684, doi. 10.1093/nar/gkr1315

By:

Roy, Sunetra;
Andres, Sara N.;
Vergnes, Alexandra;
Neal, Jessica A.;
Xu, Yao;
Yu, Yaping;
Lees-Miller, Susan P.;
Junop, Murray;
Modesti, Mauro;
Meek, Katheryn

Publication type:

Article

Yeast mitochondrial RNase P, RNase Z and the RNA degradosome are part of a stable supercomplex.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 4, p. 1728, doi. 10.1093/nar/gkr941

By:

Daoud, Rachid;
Forget, Lise;
Lang, B. Franz

Publication type:

Article

RECQL5 cooperates with Topoisomerase II alpha in DNA decatenation and cell cycle progression.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 4, p. 1621, doi. 10.1093/nar/gkr844

By:

Ramamoorthy, Mahesh;
Tadokoro, Takashi;
Rybanska, Ivana;
Ghosh, Avik K.;
Wersto, Robert;
May, Alfred;
Kulikowicz, Tomasz;
Sykora, Peter;
Croteau, Deborah L.;
Bohr, Vilhelm A.

Publication type:

Article

FANCJ coordinates two pathways that maintain epigenetic stability at G-quadruplex DNA.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 4, p. 1485, doi. 10.1093/nar/gkr868

By:

Sarkies, Peter;
Murat, Pierre;
Phillips, Lara G.;
Patel, K.J.;
Balasubramanian, Shankar;
Sale, Julian E.

Publication type:

Article

Highly organized DnaA–oriC complexes recruit the single-stranded DNA for replication initiation.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 4, p. 1648, doi. 10.1093/nar/gkr832

By:

Ozaki, Shogo;
Katayama, Tsutomu

Publication type:

Article

Solution structure and stability of the DNA undecamer duplexes containing oxanine mismatch.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 4, p. 1841, doi. 10.1093/nar/gkr872

By:

Pack, Seung Pil;
Morimoto, Hirohisa;
Makino, Keisuke;
Tajima, Kunihiko;
Kanaori, Kenji

Publication type:

Article

A human XRCC4–XLF complex bridges DNA.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 4, p. 1868, doi. 10.1093/nar/gks022

By:

Andres, Sara N.;
Vergnes, Alexandra;
Ristic, Dejan;
Wyman, Claire;
Modesti, Mauro;
Junop, Murray

Publication type:

Article

Comprehensive survey and geometric classification of base triples in RNA structures.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 4, p. 1407, doi. 10.1093/nar/gkr810

By:

Abu Almakarem, Amal S.;
Petrov, Anton I.;
Stombaugh, Jesse;
Zirbel, Craig L.;
Leontis, Neocles B.

Publication type:

Article

RSAT peak-motifs: motif analysis in full-size ChIP-seq datasets.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 4, p. e31, doi. 10.1093/nar/gkr1104

By:

Thomas-Chollier, Morgane;
Herrmann, Carl;
Defrance, Matthieu;
Sand, Olivier;
Thieffry, Denis;
van Helden, Jacques

Publication type:

Article

RecA homology search is promoted by mechanical stress along the scanned duplex DNA.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 4, p. 1717, doi. 10.1093/nar/gkr855

By:

Danilowicz, Claudia;
Feinstein, Efraim;
Conover, Alyson;
Coljee, Vincent W.;
Vlassakis, Julea;
Chan, Yuen-Ling;
Bishop, Douglas K.;
Prentiss, Mara

Publication type:

Article

Nucleic Acids Research.

Published in:: Nucleic Acids Research, 2012, v. 40, n. 4, p. i, doi. 10.1093/nar/gks108
Publication type:: Article

Interconversion between active and inactive TATA-binding protein transcription complexes in the mouse genome.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 4, p. 1446, doi. 10.1093/nar/gkr802

By:

Choukrallah, Mohamed-Amin;
Kobi, Dominique;
Martianov, Igor;
Pijnappel, W. W. M. Pim;
Mischerikow, Nikolai;
Ye, Tao;
Heck, Albert J. R.;
Timmers, H. Th. Marc;
Davidson, Irwin

Publication type:

Article

Crystal structure of Hfq from Bacillus subtilis in complex with SELEX-derived RNA aptamer: insight into RNA-binding properties of bacterial Hfq.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 4, p. 1856, doi. 10.1093/nar/gkr892

By:

Someya, Tatsuhiko;
Baba, Seiki;
Fujimoto, Mai;
Kawai, Gota;
Kumasaka, Takashi;
Nakamura, Kouji

Publication type:

Article

Importance of the NCp7-like domain in the recognition of pre-let-7g by the pluripotency factor Lin28.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 4, p. 1767, doi. 10.1093/nar/gkr808

By:

Desjardins, Alexandre;
Yang, Ao;
Bouvette, Jonathan;
Omichinski, James G.;
Legault, Pascale

Publication type:

Article

Establishing broad generality of DNA catalysts for site-specific hydrolysis of single-stranded DNA.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 4, p. 1778, doi. 10.1093/nar/gkr860

By:

Xiao, Ying;
Wehrmann, Rebecca J.;
Ibrahim, Nora A.;
Silverman, Scott K.

Publication type:

Article

Conformational dynamics of the tetracycline-binding aptamer.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 4, p. 1807, doi. 10.1093/nar/gkr835

By:

Förster, Ute;
Weigand, Julia E.;
Trojanowski, Peter;
Suess, Beatrix;
Wachtveitl, Josef

Publication type:

Article

The Caulobacter crescentus DNA-(adenine-N6)-methyltransferase CcrM methylates DNA in a distributive manner.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 4, p. 1708, doi. 10.1093/nar/gkr768

By:

Albu, Razvan F.;
Jurkowski, Tomasz P.;
Jeltsch, Albert

Publication type:

Article

The CHR promoter element controls cell cycle-dependent gene transcription and binds the DREAM and MMB complexes.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 4, p. 1561, doi. 10.1093/nar/gkr793

By:

Müller, Gerd A.;
Quaas, Marianne;
Schümann, Michael;
Krause, Eberhard;
Padi, Megha;
Fischer, Martin;
Litovchick, Larisa;
DeCaprio, James A.;
Engeland, Kurt

Publication type:

Article

POLYPHEMUS: R package for comparative analysis of RNA polymerase II ChIP-seq profiles by non-linear normalization.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 4, p. e30, doi. 10.1093/nar/gkr1205

By:

Mendoza-Parra, Marco A.;
Sankar, Martial;
Walia, Mannu;
Gronemeyer, Hinrich

Publication type:

Article

Quality control of MATa1 splicing and exon skipping by nuclear RNA degradation.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 4, p. 1787, doi. 10.1093/nar/gkr864

By:

Egecioglu, Defne E.;
Kawashima, Tadashi R.;
Chanfreau, Guillaume F.

Publication type:

Article

SeqTar: an effective method for identifying microRNA guided cleavage sites from degradome of polyadenylated transcripts in plants.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 4, p. e28, doi. 10.1093/nar/gkr1092

By:

Zheng, Yun;
Li, Yong-Fang;
Sunkar, Ramanjulu;
Zhang, Weixiong

Publication type:

Article

DNA-guided assembly of biosynthetic pathways promotes improved catalytic efficiency.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 4, p. 1879, doi. 10.1093/nar/gkr888

By:

Conrado, Robert J.;
Wu, Gabriel C.;
Boock, Jason T.;
Xu, Hansen;
Chen, Susan Y.;
Lebar, Tina;
Turnšek, Jernej;
Tomšič, Nejc;
Avbelj, Monika;
Gaber, Rok;
Koprivnjak, Tomaž;
Mori, Jerneja;
Glavnik, Vesna;
Vovk, Irena;
Benčina, Mojca;
Hodnik, Vesna;
Anderluh, Gregor;
Dueber, John E.;
Jerala, Roman;
DeLisa, Matthew P.

Publication type:

Article