Works matching AU Däumer, Martin

Results: 31

Geno2pheno: estimating phenotypic drug resistance from HIV-1 genotypes.

Published in:

Nucleic Acids Research, 2003, v. 31, n. 13, p. 3850, doi. 10.1093/nar/gkg575

By:

Beerenwinkel, Niko;
Däumer, Martin;
Oette, Mark;
Korn, Klaus;
Hoffmann, Daniel;
Kaiser, Rolf;
Lengauer, Thomas;
Selbig, Joachim;
Walter, Hauke

Publication type:

Article

Genotypic tropism testing by massively parallel sequencing: qualitative and quantitative analysis.

Published in:

2011

By:

Däumer, Martin;
Kaiser, Rolf;
Klein, Rolf;
Lengauer, Thomas;
Thiele, Bernhard;
Thielen, Alexander

Publication type:

journal article

Genotypic tropism testing by massively parallel sequencing: qualitative and quantitative analysis.

Published in:

BMC Medical Informatics & Decision Making, 2011, v. 11, n. 1, p. 30, doi. 10.1186/1472-6947-11-30

By:

Däumer, Martin;
Kaiser, Rolf;
Klein, Rolf;
Lengauer, Thomas;
Thiele, Bernhard;
Thielen, Alexander

Publication type:

Article

Frequent detection of cell‐associated HIV‐1 RNA in patients with plasma viral load <50 copies/ml.

Published in:

Journal of Medical Virology, 2007, v. 79, n. 10, p. 1440, doi. 10.1002/jmv.20993

By:

Bernd Kupfer;
Bertfried Matz;
Martin P. Däumer;
Fabienne Roden;
Jürgen K. Rockstroh;
Nazifa Qurishi;
Ulrich Spengler;
Rolf Kaiser

Publication type:

Article

HIV-1 persistent viremia is frequently followed by episodes of low-level viremia.

Published in:

Medical Microbiology & Immunology, 2017, v. 206, n. 3, p. 203, doi. 10.1007/s00430-017-0494-1

By:

Widera, Marek;
Dirks, Miriam;
Bleekmann, Barbara;
Jablonka, Robert;
Däumer, Martin;
Walter, Hauke;
Ehret, Robert;
Verheyen, Jens;
Esser, Stefan

Publication type:

Article

Characterisation of the epitope for a herpes simplex virus glycoprotein B-specific monoclonal antibody with high protective capacity.

Published in:

Medical Microbiology & Immunology, 2011, v. 200, n. 2, p. 85, doi. 10.1007/s00430-010-0174-x

By:

Däumer, Martin P.;
Schneider, Beate;
Giesen, Doris M.;
Aziz, Sheriff;
Kaiser, Rolf;
Kupfer, Bernd;
Schneweis, Karl E.;
Schneider-Mergener, Jens;
Reineke, Ulrich;
Matz, Bertfried;
Eis-Hübinger, Anna M.

Publication type:

Article

A Follow-Up of the Multicenter Collaborative Study on HIV-1 Drug Resistance and Tropism Testing Using 454 Ultra Deep Pyrosequencing.

Published in:

PLoS ONE, 2016, v. 11, n. 1, p. 1, doi. 10.1371/journal.pone.0146687

By:

St. John, Elizabeth P.;
Simen, Birgitte B.;
Turenchalk, Gregory S.;
Braverman, Michael S.;
Abbate, Isabella;
Aerssens, Jeroen;
Bouchez, Olivier;
Gabriel, Christian;
Izopet, Jacques;
Meixenberger, Karolin;
Di Giallonardo, Francesca;
Schlapbach, Ralph;
Paredes, Roger;
Sakwa, James;
Schmitz-Agheguian, Gudrun G.;
Thielen, Alexander;
Victor, Martin;
Metzner, Karin J.;
Däumer, Martin P.;
null, null

Publication type:

Article

Therapeutic Immune Recovery and Reduction of CXCR4- Tropic HIV-1.

Published in:

Clinical Infectious Diseases, 2017, v. 64, n. 3, p. 295, doi. 10.1093/cid/ciw737

By:

Bader, Joëlle;
Däumer, Martin;
Schöni-Affolter, Franziska;
Böni, Jürg;
Gorgievski-Hrisoho, Meri;
Martinetti, Gladys;
Thielen, Alexander;
Klimkait, Thomas

Publication type:

Article

Therapeutic Drug Monitoring of Long-Acting Rilpivirine and Cabotegravir for Treatment of HIV-1 Infection—A Case Series of Five Patients With One Virologic Failure After Development of Two-Class Resistance.

Published in:

2024

By:

Gerstenberg, Jacob;
Klinker, Hartwig;
Baier, Michael;
Braun, Amrei von;
Seybold, Ulrich;
Helbig, Carlotta;
Däumer, Martin;
Korn, Klaus;
Stephan, Christoph;
Schleenvoigt, Benjamin T

Publication type:

Case Study

High turnaround times and low viral resuppression rates after reinforced adherence counselling following a confirmed virological failure diagnostic algorithm in HIV-infected patients on first-line antiretroviral therapy from Tanzania.

Published in:

2020

By:

Kroidl, Arne;
Burger, Tassilo;
Urio, Agatha;
Mugeniwalwo, Roki;
Mgaya, Jimson;
Mlagalila, Faith;
Hoelscher, Michael;
Däumer, Martin;
Salehe, Omar;
Sangare, Anthony;
Lennemann, Tessa;
Maganga, Lucas

Publication type:

journal article

The L76V mutation in HIV-1 protease is potentially associated with hypersusceptibility to protease inhibitors Atazanavir and Saquinavir: is there a clinical advantage?

Published in:

AIDS Research & Therapy, 2011, v. 8, p. 7, doi. 10.1186/1742-6405-8-7

By:

Wiesmann, Frank;
Vachta, Jan;
Ehret, Robert;
Walter, Hauke;
Kaiser, Rolf;
Stürmer, Martin;
Tappe, André;
Däumer, Martin;
Berg, Thomas;
Naeth, Gudrun;
Braun, Patrick;
Knechten, Heribert

Publication type:

Article

HIV-1 diversity in viral reservoirs obtained from circulating T-cell subsets during early ART and beyond.

Published in:

PLoS Pathogens, 2024, v. 20, n. 9, p. 1, doi. 10.1371/journal.ppat.1012526

By:

Zhang, Yuepeng;
Otte, Fabian;
Stoeckle, Marcel;
Thielen, Alexander;
Däumer, Martin;
Kaiser, Rolf;
Kusejko, Katharina;
Metzner, Karin J.;
Klimkait, Thomas

Publication type:

Article

Low-frequency drug-resistant HIV-1 and risk of virological failure to first-line NNRTI-based ART: a multicohort European case–control study using centralized ultrasensitive 454 pyrosequencing.

Published in:

Journal of Antimicrobial Chemotherapy (JAC), 2015, v. 70, n. 3, p. 930

By:

Cozzi-Lepri, Alessandro;
Noguera-Julian, Marc;
Di Giallonardo, Francesca;
Schuurman, Rob;
Däumer, Martin;
Aitken, Sue;
Ceccherini-Silberstein, Francesca;
D'Arminio Monforte, Antonella;
Geretti, Anna Maria;
Booth, Clare L.;
Kaiser, Rolf;
Michalik, Claudia;
Jansen, Klaus;
Masquelier, Bernard;
Bellecave, Pantxika;
Kouyos, Roger D.;
Castro, Erika;
Furrer, Hansjakob;
Schultze, Anna;
Günthard, Huldrych F.

Publication type:

Article

Evolution of protease inhibitor resistance in the gag and pol genes of HIV subtype G isolates.

Published in:

Journal of Antimicrobial Chemotherapy (JAC), 2010, v. 65, n. 7, p. 1472, doi. 10.1093/jac/dkq129

By:

Knops, Elena;
Däumer, Martin;
Awerkiew, Sabine;
Kartashev, Vladimir;
Schülter, Eugen;
Kutsev, Sergey;
Brakier-Gingras, Léa;
Kaiser, Rolf;
Pfister, Herbert;
Verheyen, Jens

Publication type:

Article

Evolution of raltegravir resistance during therapy.

Published in:

Journal of Antimicrobial Chemotherapy (JAC), 2009, v. 64, n. 1, p. 25, doi. 10.1093/jac/dkp153

By:

Sichtig, Nadine;
Sierra, Saleta;
Kaiser, Rolf;
Däumer, Martin;
Reuter, Stefan;
Schülter, Eugen;
Altmann, Andre;
Fätkenheuer, Gerd;
Dittmer, Ulf;
Pfister, Herbert;
Esser, Stefan

Publication type:

Article

Computational methods for the design of effective therapies against drug resistant HIV strains.

Published in:

Bioinformatics, 2005, v. 21, n. 21, p. 3943, doi. 10.1093/bioinformatics/bti654

By:

Niko Beerenwinkel;
Tobias Sing;
Thomas Lengauer;
Jörg Rahnenführer;
Kirsten Roomp;
Igor Savenkov;
Roman Fischer;
Daniel Hoffmann;
Joachim Selbig;
Klaus Korn;
Hauke Walter;
Thomas Berg;
Patrick Braun;
Gerd Fätkenheuer;
Mark Oette;
Jürgen Rockstroh;
Bernd Kupfer;
Rolf Kaiser;
Martin Däumer

Publication type:

Article

Simultaneous analysis of seven 16S rRNA hypervariable gene regions increases efficiency in marine bacterial diversity detection.

Published in:

Environmental Microbiology, 2023, v. 25, n. 12, p. 3484, doi. 10.1111/1462-2920.16530

By:

Leontidou, Kleopatra;
Abad‐Recio, Ion L.;
Rubel, Verena;
Filker, Sabine;
Däumer, Martin;
Thielen, Alexander;
Lanzén, Anders;
Stoeck, Thorsten

Publication type:

Article

HIV-GRADE: A Publicly Available, Rules-Based Drug Resistance Interpretation Algorithm Integrating Bioinformatic Knowledge.

Published in:

Intervirology, 2012, v. 55, n. 2, p. 102, doi. 10.1159/000331999

By:

Obermeier, Martin;
Pironti, Alejandro;
Berg, Thomas;
Braun, Patrick;
Däumer, Martin;
Eberle, Josef;
Ehret, Robert;
Kaiser, Rolf;
Kleinkauf, Niels;
Korn, Klaus;
Kücherer, Claudia;
Müller, Harm;
Noah, Christian;
Stürmer, Martin;
Thielen, Alexander;
Wolf, Eva;
Walter, Hauke

Publication type:

Article

geno2pheno[ngs-freq]: a genotypic interpretation system for identifying viral drug resistance using next-generation sequencing data.

Published in:

Nucleic Acids Research, 2018, v. 46, n. W1, p. W271, doi. 10.1093/nar/gky349

By:

Döring, Matthias;
Büch, Joachim;
Friedrich, Georg;
Pironti, Alejandro;
Kalaghatgi, Prabhav;
Knops, Elena;
Heger, Eva;
Obermeier, Martin;
Däumer, Martin;
Thielen, Alexander

Publication type:

Article

Full-length haplotype reconstruction to infer the structure of heterogeneous virus populations.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 14, p. e115, doi. 10.1093/nar/gku537

By:

Giallonardo, Francesca Di;
Töpfer, Armin;
Rey, Melanie;
Prabhakaran, Sandhya;
Duport, Yannick;
Leemann, Christine;
Schmutz, Stefan;
Campbell, Nottania K.;
Joos, Beda;
Lecca, Maria Rita;
Patrignani, Andrea;
Däumer, Martin;
Beisel, Christian;
Rusert, Peter;
Trkola, Alexandra;
Günthard, Huldrych F.;
Roth, Volker;
Beerenwinkel, Niko;
Metzner, Karin J.

Publication type:

Article

Error correction of next-generation sequencing data and reliable estimation of HIV quasispecies.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 21, p. 7400, doi. 10.1093/nar/gkq655

By:

Zagordi, Osvaldo;
Klein, Rolf;
Däumer, Martin;
Beerenwinkel, Niko

Publication type:

Article

Rapid Selection of Sotrovimab Escape Variants in Severe Acute Respiratory Syndrome Coronavirus 2 Omicron-Infected Immunocompromised Patients.

Published in:

Clinical Infectious Diseases, 2023, v. 76, n. 3, p. 408, doi. 10.1093/cid/ciac802

By:

Gliga, Smaranda;
Lübke, Nadine;
Killer, Alexander;
Gruell, Henning;
Walker, Andreas;
Dilthey, Alexander T;
Thielen, Alexander;
Lohr, Carolin;
Flaßhove, Charlotte;
Krieg, Sarah;
Pereira, Joanna Ventura;
Seraphin, Tobias Paul;
Zaufel, Alex;
Däumer, Martin;
Orth, Hans-Martin;
Feldt, Torsten;
Bode, Johannes G;
Klein, Florian;
Timm, Jörg;
Luedde, Tom

Publication type:

Article

Characterization of Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Infection Clusters Based on Integrated Genomic Surveillance, Outbreak Analysis and Contact Tracing in an Urban Setting.

Published in:

Clinical Infectious Diseases, 2022, v. 74, n. 6, p. 1039, doi. 10.1093/cid/ciab588

By:

Walker, Andreas;
Houwaart, Torsten;
Finzer, Patrick;
Ehlkes, Lutz;
Tyshaieva, Alona;
Damagnez, Maximilian;
Strelow, Daniel;
Duplessis, Ashley;
Nicolai, Jessica;
Wienemann, Tobias;
Tamayo, Teresa;
Vasconcelos, Malte Kohns;
Hülse, Lisanna;
Hoffmann, Katrin;
Lübke, Nadine;
Hauka, Sandra;
Andree, Marcel;
Däumer, Martin P;
Thielen, Alexander;
Kolbe-Busch, Susanne

Publication type:

Article

Rapid Rebound of a Preexisting CXCR4-tropic Human Immunodeficiency Virus Variant After Allogeneic Transplantation With CCR5 Δ32 Homozygous Stem Cells.

Published in:

Clinical Infectious Diseases, 2019, v. 68, n. 4, p. 684, doi. 10.1093/cid/ciy565

By:

Verheyen, Jens;
Thielen, Alexander;
Lübke, Nadine;
Dirks, Miriam;
Widera, Marek;
Dittmer, Ulf;
Kordelas, Lambros;
Däumer, Martin;
Jong, Dorien C M de;
Wensing, Annemarie M J;
Kaiser, Rolf;
Nijhuis, Monique;
Esser, Stefan

Publication type:

Article

Impact of the HIV-1 genetic background and HIV-1 population size on the evolution of raltegravir resistance.

Published in:

Retrovirology, 2018, v. 15, p. 1, doi. 10.1186/s12977-017-0384-z

By:

Fun, Axel;
Leitner, Thomas;
Vandekerckhove, Linos;
Däumer, Martin;
Thielen, Alexander;
Buchholz, Bernd;
Hoepelman, Andy I. M.;
Gisolf, Elizabeth H.;
Schipper, Pauline J.;
Wensing, Annemarie M. J.;
Nijhuis, Monique

Publication type:

Article

Kinetics of hepatitis B surface antigen quasispecies during REP 2139‐Ca therapy in HBeAg‐positive chronic HBV infection.

Published in:

Journal of Viral Hepatitis, 2019, v. 26, n. 12, p. 1454, doi. 10.1111/jvh.13180

By:

Usman, Zainab;
Mijočević, Hrvoje;
Karimzadeh, Hadi;
Däumer, Martin;
Al‐Mathab, Mamun;
Bazinet, Michel;
Frishman, Dmitrij;
Vaillant, Andrew;
Roggendorf, Michael

Publication type:

Article

HIV-1 Tropism Testing in Subjects Achieving Undetectable HIV-1 RNA: Diagnostic Accuracy, Viral Evolution and Compartmentalization.

Published in:

PLoS ONE, 2013, v. 8, n. 8, p. 1, doi. 10.1371/journal.pone.0067085

By:

Pou, Christian;
Codoñer, Francisco M.;
Thielen, Alexander;
Bellido, Rocío;
Pérez-Álvarez, Susana;
Cabrera, Cecilia;
Dalmau, Judith;
Curriu, Marta;
Lie, Yolanda;
Noguera-Julian, Marc;
Puig, Jordi;
Martínez-Picado, Javier;
Blanco, Julià;
Coakley, Eoin;
Däumer, Martin;
Clotet, Bonaventura;
Paredes, Roger

Publication type:

Article

Read length versus Depth of Coverage for Viral Quasispecies Reconstruction.

Published in:

PLoS ONE, 2012, v. 7, n. 10, p. 1, doi. 10.1371/journal.pone.0047046

By:

Zagordi, Osvaldo;
Däumer, Martin;
Beisel, Christian;
Beerenwinkel, Niko

Publication type:

Article

Insights to HIV-1 coreceptor usage by estimating HLA adaptation with Bayesian generalized linear mixed models.

Published in:

PLoS Computational Biology, 2023, v. 19, n. 12, p. 1, doi. 10.1371/journal.pcbi.1010355

By:

Hake, Anna;
Germann, Anja;
de Beer, Corena;
Thielen, Alexander;
Däumer, Martin;
Preiser, Wolfgang;
von Briesen, Hagen;
Pfeifer, Nico

Publication type:

Article

Predicting the Response to Combination Antiretroviral Therapy: Retrospective Validation of geno2pheno-THEO on a Large Clinical Database.

Published in:

Journal of Infectious Diseases, 2009, v. 199, n. 7, p. 999, doi. 10.1086/597305

By:

Altmann, André;
Däumer, Martin;
Beerenwinkel, Niko;
Peres, Yardena;
Schülter, Eugen;
Büch, Joachim;
Soo-Yon Rhee;
Sönnerborg, Anders;
Fessel, W. Jeffrey;
Shafer, Robert W.;
Zazzi, Maurizio;
Kaiser, Rolf;
Lengauer, Thomas

Publication type:

Article

Estimating HIV Evolutionary Pathways and the Genetic Barrier to Drug Resistance.

Published in:

Journal of Infectious Diseases, 2005, v. 191, n. 11, p. 1953, doi. 10.1086/430005

By:

Beerenwinkel, Niko;
Däumer, Martin;
Sing, Tobias;
Ralinenfuhrer, Jörg;
Lengauer, Thomas;
Selbig, Joachim;
Hoffmann, Daniel;
Kaiser, Roif

Publication type:

Article