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Results: 186

REDfly v3.0: toward a comprehensive database of transcriptional regulatory elements in Drosophila.
Published in:
Nucleic Acids Research, 2011, v. 39, n. suppl_1, p. D118, doi. 10.1093/nar/gkq999
By:
- Gallo, Steven M.;
- Gerrard, Dave T.;
- Miner, David;
- Simich, Michael;
- Des Soye, Benjamin;
- Bergman, Casey M.;
- Halfon, Marc S.
Publication type:
Article
dbDNV: a resource of duplicated gene nucleotide variants in human genome.
Published in:
Nucleic Acids Research, 2011, v. 39, n. suppl_1, p. D920
By:
- Ho, Meng-Ru;
- Tsai, Kuo-Wang;
- Chen, Chun-houh;
- Lin, Wen-chang
Publication type:
Article
PROMISCUOUS: a database for network-based drug-repositioning.
Published in:
Nucleic Acids Research, 2011, v. 39, n. suppl_1, p. D1060, doi. 10.1093/nar/gkq1037
By:
- von Eichborn, Joachim;
- Murgueitio, Manuela S.;
- Dunkel, Mathias;
- Koerner, Soeren;
- Bourne, Philip E.;
- Preissner, Robert
Publication type:
Article
Phospho3D 2.0: an enhanced database of three-dimensional structures of phosphorylation sites.
Published in:
Nucleic Acids Research, 2011, v. 39, n. suppl_1, p. D268, doi. 10.1093/nar/gkq936
By:
- Zanzoni, Andreas;
- Carbajo, Daniel;
- Diella, Francesca;
- Gherardini, Pier Federico;
- Tramontano, Anna;
- Helmer-Citterich, Manuela;
- Via, Allegra
Publication type:
Article
YPA: an integrated repository of promoter features in Saccharomyces cerevisiae.
Published in:
Nucleic Acids Research, 2011, v. 39, n. suppl_1, p. D647, doi. 10.1093/nar/gkq1086
By:
- Chang, Darby Tien-Hao;
- Huang, Cheng-Yi;
- Wu, Chi-Yeh;
- Wu, Wei-Sheng
Publication type:
Article
PSSRdb: a relational database of polymorphic simple sequence repeats extracted from prokaryotic genomes.
Published in:
Nucleic Acids Research, 2011, v. 39, n. suppl_1, p. D601, doi. 10.1093/nar/gkq1198
By:
- Kumar, Pankaj;
- Chaitanya, Pasumarthy S.;
- Nagarajaram, Hampapathalu A.
Publication type:
Article
NGSmethDB: a database for next-generation sequencing single-cytosine-resolution DNA methylation data.
Published in:
Nucleic Acids Research, 2011, v. 39, n. suppl_1, p. D75, doi. 10.1093/nar/gkq942
By:
- Hackenberg, Michael;
- Barturen, Guillermo;
- Oliver, José L.
Publication type:
Article
The BioGRID Interaction Database: 2011 update.
Published in:
Nucleic Acids Research, 2011, v. 39, n. suppl_1, p. D698, doi. 10.1093/nar/gkq1116
By:
- Stark, Chris;
- Breitkreutz, Bobby-Joe;
- Chatr-aryamontri, Andrew;
- Boucher, Lorrie;
- Oughtred, Rose;
- Livstone, Michael S.;
- Nixon, Julie;
- Van Auken, Kimberly;
- Wang, Xiaodong;
- Shi, Xiaoqi;
- Reguly, Teresa;
- Rust, Jennifer M.;
- Winter, Andrew;
- Dolinski, Kara;
- Tyers, Mike
Publication type:
Article
DBASS3 and DBASS5: databases of aberrant 3′- and 5′-splice sites.
Published in:
Nucleic Acids Research, 2011, v. 39, n. suppl_1, p. D86, doi. 10.1093/nar/gkq887
By:
- Buratti, Emanuele;
- Chivers, Martin;
- Hwang, Gyulin;
- Vorechovsky, Igor
Publication type:
Article
The RIKEN integrated database of mammals.
Published in:
Nucleic Acids Research, 2011, v. 39, n. suppl_1, p. D861, doi. 10.1093/nar/gkq1078
By:
- Masuya, Hiroshi;
- Makita, Yuko;
- Kobayashi, Norio;
- Nishikata, Koro;
- Yoshida, Yuko;
- Mochizuki, Yoshiki;
- Doi, Koji;
- Takatsuki, Terue;
- Waki, Kazunori;
- Tanaka, Nobuhiko;
- Ishii, Manabu;
- Matsushima, Akihiro;
- Takahashi, Satoshi;
- Hijikata, Atsushi;
- Kozaki, Kouji;
- Furuichi, Teiichi;
- Kawaji, Hideya;
- Wakana, Shigeharu;
- Nakamura, Yukio;
- Yoshiki, Atsushi
Publication type:
Article
DOMINE: a comprehensive collection of known and predicted domain-domain interactions.
Published in:
Nucleic Acids Research, 2011, v. 39, n. suppl_1, p. D730, doi. 10.1093/nar/gkq1229
By:
- Yellaboina, Sailu;
- Tasneem, Asba;
- Zaykin, Dmitri V.;
- Raghavachari, Balaji;
- Jothi, Raja
Publication type:
Article
FragmentStore—a comprehensive database of fragments linking metabolites, toxic molecules and drugs.
Published in:
Nucleic Acids Research, 2011, v. 39, n. suppl_1, p. D1049, doi. 10.1093/nar/gkq969
By:
- Ahmed, Jessica;
- Worth, Catherine L.;
- Thaben, Paul;
- Matzig, Christian;
- Blasse, Corinna;
- Dunkel, Mathias;
- Preissner, Robert
Publication type:
Article
The Protein Ontology: a structured representation of protein forms and complexes.
Published in:
Nucleic Acids Research, 2011, v. 39, n. suppl_1, p. D539, doi. 10.1093/nar/gkq907
By:
- Natale, Darren A.;
- Arighi, Cecilia N.;
- Barker, Winona C.;
- Blake, Judith A.;
- Bult, Carol J.;
- Caudy, Michael;
- Drabkin, Harold J.;
- D’Eustachio, Peter;
- Evsikov, Alexei V.;
- Huang, Hongzhan;
- Nchoutmboube, Jules;
- Roberts, Natalia V.;
- Smith, Barry;
- Zhang, Jian;
- Wu, Cathy H.
Publication type:
Article
VKCDB: voltage-gated K+ channel database updated and upgraded.
Published in:
Nucleic Acids Research, 2011, v. 39, n. suppl_1, p. D362, doi. 10.1093/nar/gkq1000
By:
- Gallin, Warren J.;
- Boutet, Patrick A.
Publication type:
Article
BriX: a database of protein building blocks for structural analysis, modeling and design.
Published in:
Nucleic Acids Research, 2011, v. 39, n. suppl_1, p. D435, doi. 10.1093/nar/gkq972
By:
- Vanhee, Peter;
- Verschueren, Erik;
- Baeten, Lies;
- Stricher, Francois;
- Serrano, Luis;
- Rousseau, Frederic;
- Schymkowitz, Joost
Publication type:
Article
Community cyberinfrastructure for Advanced Microbial Ecology Research and Analysis: the CAMERA resource.
Published in:
Nucleic Acids Research, 2011, v. 39, n. suppl_1, p. D546, doi. 10.1093/nar/gkq1102
By:
- Sun, Shulei;
- Chen, Jing;
- Li, Weizhong;
- Altintas, Ilkay;
- Lin, Abel;
- Peltier, Steve;
- Stocks, Karen;
- Allen, Eric E.;
- Ellisman, Mark;
- Grethe, Jeffrey;
- Wooley, John
Publication type:
Article
The UCSC cancer genomics browser: update 2011.
Published in:
Nucleic Acids Research, 2011, v. 39, n. suppl_1, p. D951, doi. 10.1093/nar/gkq1113
By:
- Sanborn, J. Zachary;
- Benz, Stephen C.;
- Craft, Brian;
- Szeto, Christopher;
- Kober, Kord M.;
- Meyer, Laurence;
- Vaske, Charles J.;
- Goldman, Mary;
- Smith, Kayla E.;
- Kuhn, Robert M.;
- Karolchik, Donna;
- Kent, W. James;
- Stuart, Joshua M.;
- Haussler, David;
- Zhu, Jingchun
Publication type:
Article
ViralZone: a knowledge resource to understand virus diversity.
Published in:
Nucleic Acids Research, 2011, v. 39, n. suppl_1, p. D576, doi. 10.1093/nar/gkq901
By:
- Hulo, Chantal;
- de Castro, Edouard;
- Masson, Patrick;
- Bougueleret, Lydie;
- Bairoch, Amos;
- Xenarios, Ioannis;
- Le Mercier, Philippe
Publication type:
Article
RBPDB: a database of RNA-binding specificities.
Published in:
Nucleic Acids Research, 2011, v. 39, n. suppl_1, p. D301, doi. 10.1093/nar/gkq1069
By:
- Cook, Kate B.;
- Kazan, Hilal;
- Zuberi, Khalid;
- Morris, Quaid;
- Hughes, Timothy R.
Publication type:
Article
PlantTFDB 2.0: update and improvement of the comprehensive plant transcription factor database.
Published in:
Nucleic Acids Research, 2011, v. 39, n. suppl_1, p. D1114, doi. 10.1093/nar/gkq1141
By:
- Zhang, He;
- Jin, Jinpu;
- Tang, Liang;
- Zhao, Yi;
- Gu, Xiaocheng;
- Gao, Ge;
- Luo, Jingchu
Publication type:
Article
LocDB: experimental annotations of localization for Homo sapiens and Arabidopsis thaliana.
Published in:
Nucleic Acids Research, 2011, v. 39, n. suppl_1, p. D230, doi. 10.1093/nar/gkq927
By:
- Rastogi, Shruti;
- Rost, Burkhard
Publication type:
Article
Allele frequency net: a database and online repository for immune gene frequencies in worldwide populations.
Published in:
Nucleic Acids Research, 2011, v. 39, n. suppl_1, p. D913, doi. 10.1093/nar/gkq1128
By:
- Gonzalez-Galarza, Faviel F.;
- Christmas, Stephen;
- Middleton, Derek;
- Jones, Andrew R.
Publication type:
Article
The Sequence Read Archive.
Published in:
Nucleic Acids Research, 2011, v. 39, n. suppl_1, p. D19
By:
- Leinonen, Rasko;
- Sugawara, Hideaki;
- Shumway, Martin
Publication type:
Article
New tools and methods for direct programmatic access to the dbSNP relational database.
Published in:
Nucleic Acids Research, 2011, v. 39, n. suppl_1, p. D901, doi. 10.1093/nar/gkq1054
By:
- Saccone, Scott F.;
- Quan, Jiaxi;
- Mehta, Gaurang;
- Bolze, Raphael;
- Thomas, Prasanth;
- Deelman, Ewa;
- Tischfield, Jay A.;
- Rice, John P.
Publication type:
Article
Laminin database: a tool to retrieve high-throughput and curated data for studies on laminins.
Published in:
Nucleic Acids Research, 2011, v. 39, n. suppl_1, p. D320, doi. 10.1093/nar/gkq1055
By:
- Golbert, Daiane C. F.;
- Linhares-Lacerda, Leandra;
- Almeida, Luiz G.;
- Correa-de-Santana, Eliane;
- de Oliveira, Alice R.;
- Mundstein, Alex S.;
- Savino, Wilson;
- de Vasconcelos, Ana T. R.
Publication type:
Article
MatrixDB, the extracellular matrix interaction database.
Published in:
Nucleic Acids Research, 2011, v. 39, n. suppl_1, p. D235, doi. 10.1093/nar/gkq830
By:
- Chautard, Emilie;
- Fatoux-Ardore, Marie;
- Ballut, Lionel;
- Thierry-Mieg, Nicolas;
- Ricard-Blum, Sylvie
Publication type:
Article
WebGeSTer DB—a transcription terminator database.
Published in:
Nucleic Acids Research, 2011, v. 39, n. suppl_1, p. D129, doi. 10.1093/nar/gkq971
By:
- Mitra, Anirban;
- Kesarwani, Anil K.;
- Pal, Debnath;
- Nagaraja, Valakunja
Publication type:
Article
3did: identification and classification of domain-based interactions of known three-dimensional structure.
Published in:
Nucleic Acids Research, 2011, v. 39, n. suppl_1, p. D718, doi. 10.1093/nar/gkq962
By:
- Stein, Amelie;
- Céol, Arnaud;
- Aloy, Patrick
Publication type:
Article
PREX: PeroxiRedoxin classification indEX, a database of subfamily assignments across the diverse peroxiredoxin family.
Published in:
Nucleic Acids Research, 2011, v. 39, n. suppl_1, p. D332, doi. 10.1093/nar/gkq1060
By:
- Soito, Laura;
- Williamson, Chris;
- Knutson, Stacy T.;
- Fetrow, Jacquelyn S.;
- Poole, Leslie B.;
- Nelson, Kimberly J.
Publication type:
Article
DroID 2011: a comprehensive, integrated resource for protein, transcription factor, RNA and gene interactions for Drosophila.
Published in:
Nucleic Acids Research, 2011, v. 39, n. suppl_1, p. D736, doi. 10.1093/nar/gkq1092
By:
- Murali, Thilakam;
- Pacifico, Svetlana;
- Yu, Jingkai;
- Guest, Stephen;
- Roberts, George G.;
- Finley, Russell L.
Publication type:
Article
MIPS: curated databases and comprehensive secondary data resources in 2010.
Published in:
Nucleic Acids Research, 2011, v. 39, n. suppl_1, p. D220, doi. 10.1093/nar/gkq1157
By:
- Mewes, H. Werner;
- Ruepp, Andreas;
- Theis, Fabian;
- Rattei, Thomas;
- Walter, Mathias;
- Frishman, Dmitrij;
- Suhre, Karsten;
- Spannagl, Manuel;
- Mayer, Klaus F.X.;
- Stümpflen, Volker;
- Antonov, Alexey
Publication type:
Article
tRNADB-CE 2011: tRNA gene database curated manually by experts.
Published in:
Nucleic Acids Research, 2011, v. 39, n. suppl_1, p. D210, doi. 10.1093/nar/gkq1007
By:
- Abe, Takashi;
- Ikemura, Toshimichi;
- Sugahara, Junichi;
- Kanai, Akio;
- Ohara, Yasuo;
- Uehara, Hiroshi;
- Kinouchi, Makoto;
- Kanaya, Shigehiko;
- Yamada, Yuko;
- Muto, Akira;
- Inokuchi, Hachiro
Publication type:
Article
Tomato Functional Genomics Database: a comprehensive resource and analysis package for tomato functional genomics.
Published in:
Nucleic Acids Research, 2011, v. 39, n. suppl_1, p. D1156, doi. 10.1093/nar/gkq991
By:
- Fei, Zhangjun;
- Joung, Je-Gun;
- Tang, Xuemei;
- Zheng, Yi;
- Huang, Mingyun;
- Lee, Je Min;
- McQuinn, Ryan;
- Tieman, Denise M.;
- Alba, Rob;
- Klee, Harry J.;
- Giovannoni, James J.
Publication type:
Article
HIT: linking herbal active ingredients to targets.
Published in:
Nucleic Acids Research, 2011, v. 39, n. suppl_1, p. D1055
By:
- Ye, Hao;
- Ye, Li;
- Kang, Hong;
- Zhang, Duanfeng;
- Tao, Lin;
- Tang, Kailin;
- Liu, Xueping;
- Zhu, Ruixin;
- Liu, Qi;
- Chen, Y. Z.;
- Li, Yixue;
- Cao, Zhiwei
Publication type:
Article
BRENDA, the enzyme information system in 2011.
Published in:
Nucleic Acids Research, 2011, v. 39, n. suppl_1, p. D670, doi. 10.1093/nar/gkq1089
By:
- Scheer, Maurice;
- Grote, Andreas;
- Chang, Antje;
- Schomburg, Ida;
- Munaretto, Cornelia;
- Rother, Michael;
- Söhngen, Carola;
- Stelzer, Michael;
- Thiele, Juliane;
- Schomburg, Dietmar
Publication type:
Article
TOPSAN: a dynamic web database for structural genomics.
Published in:
Nucleic Acids Research, 2011, v. 39, n. suppl_1, p. D494, doi. 10.1093/nar/gkq902
By:
- Ellrott, Kyle;
- Zmasek, Christian M.;
- Weekes, Dana;
- Sri Krishna, S.;
- Bakolitsa, Constantina;
- Godzik, Adam;
- Wooley, John
Publication type:
Article
The Comparative Toxicogenomics Database: update 2011.
Published in:
Nucleic Acids Research, 2011, v. 39, n. suppl_1, p. D1067, doi. 10.1093/nar/gkq813
By:
- Davis, Allan Peter;
- King, Benjamin L.;
- Mockus, Susan;
- Murphy, Cynthia G.;
- Saraceni-Richards, Cynthia;
- Rosenstein, Michael;
- Wiegers, Thomas;
- Mattingly, Carolyn J.
Publication type:
Article
KaPPA-View4: a metabolic pathway database for representation and analysis of correlation networks of gene co-expression and metabolite co-accumulation and omics data.
Published in:
Nucleic Acids Research, 2011, v. 39, n. suppl_1, p. D677, doi. 10.1093/nar/gkq989
By:
- Sakurai, Nozomu;
- Ara, Takeshi;
- Ogata, Yoshiyuki;
- Sano, Ryosuke;
- Ohno, Takashi;
- Sugiyama, Kenjiro;
- Hiruta, Atsushi;
- Yamazaki, Kiyoshi;
- Yano, Kentaro;
- Aoki, Koh;
- Aharoni, Asaph;
- Hamada, Kazuki;
- Yokoyama, Koji;
- Kawamura, Shingo;
- Otsuka, Hirofumi;
- Tokimatsu, Toshiaki;
- Kanehisa, Minoru;
- Suzuki, Hideyuki;
- Saito, Kazuki;
- Shibata, Daisuke
Publication type:
Article
Full-parasites: database of full-length cDNAs of apicomplexa parasites, 2010 update.
Published in:
Nucleic Acids Research, 2011, v. 39, n. suppl_1, p. D625, doi. 10.1093/nar/gkq1111
By:
- Tuda, Josef;
- Mongan, Arthur E.;
- Tolba, Mohammed E. M.;
- Imada, Mihoko;
- Yamagishi, Junya;
- Xuan, Xuenan;
- Wakaguri, Hiroyuki;
- Sugano, Sumio;
- Sugimoto, Chihiro;
- Suzuki, Yutaka
Publication type:
Article
COMBREX: a project to accelerate the functional annotation of prokaryotic genomes.
Published in:
Nucleic Acids Research, 2011, v. 39, n. suppl_1, p. D11, doi. 10.1093/nar/gkq1168
By:
- Roberts, Richard J.;
- Chang, Yi-Chien;
- Hu, Zhenjun;
- Rachlin, John N.;
- Anton, Brian P.;
- Pokrzywa, Revonda M.;
- Choi, Han-Pil;
- Faller, Lina L.;
- Guleria, Jyotsna;
- Housman, Genevieve;
- Klitgord, Niels;
- Mazumdar, Varun;
- McGettrick, Mark G.;
- Osmani, Lais;
- Swaminathan, Rajeswari;
- Tao, Kevin R.;
- Letovsky, Stan;
- Vitkup, Dennis;
- Segrè, Daniel;
- Salzberg, Steven L.
Publication type:
Article
RiceXPro: a platform for monitoring gene expression in japonica rice grown under natural field conditions.
Published in:
Nucleic Acids Research, 2011, v. 39, n. suppl_1, p. D1141, doi. 10.1093/nar/gkq1085
By:
- Sato, Yutaka;
- Antonio, Baltazar A.;
- Namiki, Nobukazu;
- Takehisa, Hinako;
- Minami, Hiroshi;
- Kamatsuki, Kaori;
- Sugimoto, Kazuhiko;
- Shimizu, Yuji;
- Hirochika, Hirohiko;
- Nagamura, Yoshiaki
Publication type:
Article
starBase: a database for exploring microRNA–mRNA interaction maps from Argonaute CLIP-Seq and Degradome-Seq data.
Published in:
Nucleic Acids Research, 2011, v. 39, n. suppl_1, p. D202, doi. 10.1093/nar/gkq1056
By:
- Yang, Jian-Hua;
- Li, Jun-Hao;
- Shao, Peng;
- Zhou, Hui;
- Chen, Yue-Qin;
- Qu, Liang-Hu
Publication type:
Article
TIARA: a database for accurate analysis of multiple personal genomes based on cross-technology.
Published in:
Nucleic Acids Research, 2011, v. 39, n. suppl_1, p. D883, doi. 10.1093/nar/gkq1101
By:
- Hong, Dongwan;
- Park, Sung-Soo;
- Ju, Young Seok;
- Kim, Sheehyun;
- Shin, Jong-Yeon;
- Kim, Sujung;
- Yu, Saet-Byeol;
- Lee, Won-Chul;
- Lee, Seungbok;
- Park, Hansoo;
- Kim, Jong-Il;
- Seo, Jeong-Sun
Publication type:
Article
PCRPi-DB: a database of computationally annotated hot spots in protein interfaces.
Published in:
Nucleic Acids Research, 2011, v. 39, n. suppl_1, p. D755, doi. 10.1093/nar/gkq1068
By:
- Segura, Joan;
- Fernandez-Fuentes, Narcis
Publication type:
Article
NIASGBdb: NIAS Genebank databases for genetic resources and plant disease information.
Published in:
Nucleic Acids Research, 2011, v. 39, n. suppl_1, p. D1108, doi. 10.1093/nar/gkq916
By:
- Takeya, Masaru;
- Yamasaki, Fukuhiro;
- Uzuhashi, Shihomi;
- Aoki, Takayuki;
- Sawada, Hiroyuki;
- Nagai, Toshirou;
- Tomioka, Keisuke;
- Tomooka, Norihiko;
- Sato, Toyozo;
- Kawase, Makoto
Publication type:
Article
NCBI GEO: archive for functional genomics data sets—10 years on.
Published in:
Nucleic Acids Research, 2011, v. 39, n. suppl_1, p. D1005, doi. 10.1093/nar/gkq1184
By:
- Barrett, Tanya;
- Troup, Dennis B.;
- Wilhite, Stephen E.;
- Ledoux, Pierre;
- Evangelista, Carlos;
- Kim, Irene F.;
- Tomashevsky, Maxim;
- Marshall, Kimberly A.;
- Phillippy, Katherine H.;
- Sherman, Patti M.;
- Muertter, Rolf N.;
- Holko, Michelle;
- Ayanbule, Oluwabukunmi;
- Yefanov, Andrey;
- Soboleva, Alexandra
Publication type:
Article
The International Nucleotide Sequence Database Collaboration.
Published in:
Nucleic Acids Research, 2011, v. 39, n. suppl_1, p. D15
By:
- Cochrane, Guy;
- Karsch-Mizrachi, Ilene;
- Nakamura, Yasukazu
Publication type:
Article
The RNA helicase database.
Published in:
Nucleic Acids Research, 2011, v. 39, n. suppl_1, p. D338, doi. 10.1093/nar/gkq1002
By:
- Jankowsky, Anja;
- Guenther, Ulf-Peter;
- Jankowsky, Eckhard
Publication type:
Article
The Gypsy Database (GyDB) of mobile genetic elements: release 2.0.
Published in:
Nucleic Acids Research, 2011, v. 39, n. suppl_1, p. D70, doi. 10.1093/nar/gkq1061
By:
- Llorens, Carlos;
- Futami, Ricardo;
- Covelli, Laura;
- Domínguez-Escribá, Laura;
- Viu, Jose M.;
- Tamarit, Daniel;
- Aguilar-Rodríguez, Jose;
- Vicente-Ripolles, Miguel;
- Fuster, Gonzalo;
- Bernet, Guillermo P.;
- Maumus, Florian;
- Munoz-Pomer, Alfonso;
- Sempere, Jose M.;
- Latorre, Amparo;
- Moya, Andres
Publication type:
Article
FGDB: revisiting the genome annotation of the plant pathogen Fusarium graminearum.
Published in:
Nucleic Acids Research, 2011, v. 39, n. suppl_1, p. D637, doi. 10.1093/nar/gkq1016
By:
- Wong, Philip;
- Walter, Mathias;
- Lee, Wanseon;
- Mannhaupt, Gertrud;
- Münsterkötter, Martin;
- Mewes, Hans-Werner;
- Adam, Gerhard;
- Güldener, Ulrich
Publication type:
Article