Works matching IS 03051048 AND DT 2009 AND VI 37 AND IP suppl_2

Results: 117

OrthoSelect: a web server for selecting orthologous gene alignments from EST sequences.

Published in:

Nucleic Acids Research, 2009, v. 37, n. suppl_2, p. W185, doi. 10.1093/nar/gkp434

By:

Schreiber, Fabian;
Wörheide, Gert;
Morgenstern, Burkhard

Publication type:

Article

Gendoo: Functional profiling of gene and disease features using MeSH vocabulary.

Published in:

Nucleic Acids Research, 2009, v. 37, n. suppl_2, p. W166, doi. 10.1093/nar/gkp483

By:

Nakazato, Takeru;
Bono, Hidemasa;
Matsuda, Hideo;
Takagi, Toshihisa

Publication type:

Article

A standardized framework for accurate, high-throughput genotyping of recombinant and non-recombinant viral sequences.

Published in:

Nucleic Acids Research, 2009, v. 37, n. suppl_2, p. W634, doi. 10.1093/nar/gkp455

By:

Alcantara, Luiz Carlos Junior;
Cassol, Sharon;
Libin, Pieter;
Deforche, Koen;
Pybus, Oliver G.;
Van Ranst, Marc;
Galvão-Castro, Bernardo;
Vandamme, Anne-Mieke;
de Oliveira, Tulio

Publication type:

Article

Subscriptions.

Published in:: Nucleic Acids Research, 2009, v. 37, n. suppl_2, p. iii, doi. 10.1093/nar/gkn1021
Publication type:: Article

Nucleic Acids Research.

Published in:: Nucleic Acids Research, 2009, v. 37, n. suppl_2, p. i, doi. 10.1093/nar/gkp008
Publication type:: Article

Nucleic Acids Research.

Published in:: Nucleic Acids Research, 2009, v. 37, n. suppl_2, p. ii, doi. 10.1093/nar/gkn1016
Publication type:: Article

Evolution in bioinformatic resources: 2009 update on the Bioinformatics Links Directory.

Published in:

Nucleic Acids Research, 2009, v. 37, n. suppl_2, p. W3, doi. 10.1093/nar/gkp531

By:

Brazas, Michelle D.;
Yamada, Joseph Tadashi;
Ouellette, B. F. Francis

Publication type:

Article

Nucleic Acids Research annual Web Server Issue in 2009.

Published in:

Nucleic Acids Research, 2009, v. 37, n. suppl_2, p. W1, doi. 10.1093/nar/gkp505

By:

Benson, Gary

Publication type:

Article

PLAN2L: a web tool for integrated text mining and literature-based bioentity relation extraction.

Published in:

Nucleic Acids Research, 2009, v. 37, n. suppl_2, p. W160, doi. 10.1093/nar/gkp484

By:

Krallinger, Martin;
Rodriguez-Penagos, Carlos;
Tendulkar, Ashish;
Valencia, Alfonso

Publication type:

Article

BioPortal: ontologies and integrated data resources at the click of a mouse.

Published in:

Nucleic Acids Research, 2009, v. 37, n. suppl_2, p. W170, doi. 10.1093/nar/gkp440

By:

Noy, Natalya F.;
Shah, Nigam H.;
Whetzel, Patricia L.;
Dai, Benjamin;
Dorf, Michael;
Griffith, Nicholas;
Jonquet, Clement;
Rubin, Daniel L.;
Storey, Margaret-Anne;
Chute, Christopher G.;
Musen, Mark A.

Publication type:

Article

mGene.web: a web service for accurate computational gene finding.

Published in:

Nucleic Acids Research, 2009, v. 37, n. suppl_2, p. W312, doi. 10.1093/nar/gkp479

By:

Schweikert, Gabriele;
Behr, Jonas;
Zien, Alexander;
Zeller, Georg;
Ong, Cheng Soon;
Sonnenburg, Sören;
Rätsch, Gunnar

Publication type:

Article

PubChem: a public information system for analyzing bioactivities of small molecules.

Published in:

Nucleic Acids Research, 2009, v. 37, n. suppl_2, p. W623, doi. 10.1093/nar/gkp456

By:

Wang, Yanli;
Xiao, Jewen;
Suzek, Tugba O.;
Zhang, Jian;
Wang, Jiyao;
Bryant, Stephen H.

Publication type:

Article

Gene set-based analysis of polymorphisms: finding pathways or biological processes associated to traits in genome-wide association studies.

Published in:

Nucleic Acids Research, 2009, v. 37, n. suppl_2, p. W340, doi. 10.1093/nar/gkp481

By:

Medina, Ignacio;
Montaner, David;
Bonifaci, Nuria;
Pujana, Miguel Angel;
Carbonell, José;
Tarraga, Joaquin;
Al-Shahrour, Fatima;
Dopazo, Joaquin

Publication type:

Article

seeMotif: exploring and visualizing sequence motifs in 3D structures.

Published in:

Nucleic Acids Research, 2009, v. 37, n. suppl_2, p. W552, doi. 10.1093/nar/gkp439

By:

Chang, Darby Tien-Hao;
Chien, Ting-Ying;
Chen, Chien-Yu

Publication type:

Article

RNAmutants: a web server to explore the mutational landscape of RNA secondary structures.

Published in:

Nucleic Acids Research, 2009, v. 37, n. suppl_2, p. W281

By:

Waldispühl, Jerome;
Devadas, Srinivas;
Berger, Bonnie;
Clote, Peter

Publication type:

Article

MaXIC-Q Web: a fully automated web service using statistical and computational methods for protein quantitation based on stable isotope labeling and LC–MS.

Published in:

Nucleic Acids Research, 2009, v. 37, n. suppl_2, p. W661, doi. 10.1093/nar/gkp476

By:

Tsou, Chih-Chiang;
Tsui, Yin-Hao;
Yian, Yi-Hwa;
Chen, Yi-Ju;
Yang, Han-Yin;
Yu, Chuan-Yih;
Lynn, Ke-Shiuan;
Chen, Yu-Ju;
Sung, Ting-Yi;
Hsu, Wen-Lian

Publication type:

Article

Torque: topology-free querying of protein interaction networks.

Published in:

Nucleic Acids Research, 2009, v. 37, n. suppl_2, p. W106, doi. 10.1093/nar/gkp474

By:

Bruckner, Sharon;
Hüffner, Falk;
Karp, Richard M.;
Shamir, Ron;
Sharan, Roded

Publication type:

Article

Pscan: finding over-represented transcription factor binding site motifs in sequences from co-regulated or co-expressed genes.

Published in:

Nucleic Acids Research, 2009, v. 37, n. suppl_2, p. W247, doi. 10.1093/nar/gkp464

By:

Zambelli, Federico;
Pesole, Graziano;
Pavesi, Giulio

Publication type:

Article

G-SESAME: web tools for GO-term-based gene similarity analysis and knowledge discovery.

Published in:

Nucleic Acids Research, 2009, v. 37, n. suppl_2, p. W345

By:

Du, Zhidian;
Li, Lin;
Chen, Chin-Fu;
Yu, Philip S.;
Wang, James Z.

Publication type:

Article

ProGMap: an integrated annotation resource for protein orthology.

Published in:

Nucleic Acids Research, 2009, v. 37, n. suppl_2, p. W428, doi. 10.1093/nar/gkp462

By:

Kuzniar, Arnold;
Lin, Ke;
He, Ying;
Nijveen, Harm;
Pongor, Sándor;
Leunissen, Jack A. M.

Publication type:

Article

TmPrime: fast, flexible oligonucleotide design software for gene synthesis.

Published in:

Nucleic Acids Research, 2009, v. 37, n. suppl_2, p. W214, doi. 10.1093/nar/gkp461

By:

Bode, Marcus;
Khor, Samuel;
Ye, Hongye;
Li, Mo-Huang;
Ying, Jackie Y.

Publication type:

Article

DASMIweb: online integration, analysis and assessment of distributed protein interaction data.

Published in:

Nucleic Acids Research, 2009, v. 37, n. suppl_2, p. W122, doi. 10.1093/nar/gkp438

By:

Blankenburg, Hagen;
Ramírez, Fidel;
Büch, Joachim;
Albrecht, Mario

Publication type:

Article

VisHiC—hierarchical functional enrichment analysis of microarray data.

Published in:

Nucleic Acids Research, 2009, v. 37, n. suppl_2, p. W587, doi. 10.1093/nar/gkp435

By:

Krushevskaya, Darya;
Peterson, Hedi;
Reimand, Jüri;
Kull, Meelis;
Vilo, Jaak

Publication type:

Article

ProteDNA: a sequence-based predictor of sequence-specific DNA-binding residues in transcription factors.

Published in:

Nucleic Acids Research, 2009, v. 37, n. suppl_2, p. W396, doi. 10.1093/nar/gkp449

By:

Chu, Wen-Yi;
Huang, Yu-Feng;
Huang, Chun-Chin;
Cheng, Yi-Sheng;
Huang, Chien-Kang;
Oyang, Yen-Jen

Publication type:

Article

SARA: a server for function annotation of RNA structures.

Published in:

Nucleic Acids Research, 2009, v. 37, n. suppl_2, p. W260, doi. 10.1093/nar/gkp433

By:

Capriotti, Emidio;
Marti-Renom, Marc A.

Publication type:

Article

PathExpress update: the enzyme neighbourhood method of associating gene-expression data with metabolic pathways.

Published in:

Nucleic Acids Research, 2009, v. 37, n. suppl_2, p. W335, doi. 10.1093/nar/gkp432

By:

Goffard, Nicolas;
Frickey, Tancred;
Weiller, Georg

Publication type:

Article

The SALAMI protein structure search server.

Published in:

Nucleic Acids Research, 2009, v. 37, n. suppl_2, p. W480, doi. 10.1093/nar/gkp431

By:

Margraf, Thomas;
Schenk, Gundolf;
Torda, Andrew E.

Publication type:

Article

AutoClass@IJM: a powerful tool for Bayesian classification of heterogeneous data in biology.

Published in:

Nucleic Acids Research, 2009, v. 37, n. suppl_2, p. W63, doi. 10.1093/nar/gkp430

By:

Achcar, Fiona;
Camadro, Jean-Michel;
Mestivier, Denis

Publication type:

Article

GoGene: gene annotation in the fast lane.

Published in:

Nucleic Acids Research, 2009, v. 37, n. suppl_2, p. W300, doi. 10.1093/nar/gkp429

By:

Plake, Conrad;
Royer, Loic;
Winnenburg, Rainer;
Hakenberg, Jörg;
Schroeder, Michael

Publication type:

Article

WebLab: a data-centric, knowledge-sharing bioinformatic platform.

Published in:

Nucleic Acids Research, 2009, v. 37, n. suppl_2, p. W33, doi. 10.1093/nar/gkp428

By:

Liu, Xiaoqiao;
Wu, Jianmin;
Wang, Jun;
Liu, Xiaochuan;
Zhao, Shuqi;
Li, Zhe;
Kong, Lei;
Gu, Xiaocheng;
Luo, Jingchu;
Gao, Ge

Publication type:

Article

RHYTHM—a server to predict the orientation of transmembrane helices in channels and membrane-coils.

Published in:

Nucleic Acids Research, 2009, v. 37, n. suppl_2, p. W575, doi. 10.1093/nar/gkp418

By:

Rose, Alexander;
Lorenzen, Stephan;
Goede, Andrean;
Gruening, Björn;
Hildebrand, Peter W.

Publication type:

Article

GeneCodis: interpreting gene lists through enrichment analysis and integration of diverse biological information.

Published in:

Nucleic Acids Research, 2009, v. 37, n. suppl_2, p. W317, doi. 10.1093/nar/gkp416

By:

Nogales-Cadenas, Ruben;
Carmona-Saez, Pedro;
Vazquez, Miguel;
Vicente, Cesar;
Yang, Xiaoyuan;
Tirado, Francisco;
Carazo, Jose María;
Pascual-Montano, Alberto

Publication type:

Article

RegAnalyst: a web interface for the analysis of regulatory motifs, networks and pathways.

Published in:

Nucleic Acids Research, 2009, v. 37, n. suppl_2, p. W193, doi. 10.1093/nar/gkp388

By:

Sharma, Deepak;
Mohanty, Debasisa;
Surolia, Avadhesha

Publication type:

Article

ToppGene Suite for gene list enrichment analysis and candidate gene prioritization.

Published in:

Nucleic Acids Research, 2009, v. 37, n. suppl_2, p. W305, doi. 10.1093/nar/gkp427

By:

Chen, Jing;
Bardes, Eric E.;
Aronow, Bruce J.;
Jegga, Anil G.

Publication type:

Article

SEPPA: a computational server for spatial epitope prediction of protein antigens.

Published in:

Nucleic Acids Research, 2009, v. 37, n. suppl_2, p. W612, doi. 10.1093/nar/gkp417

By:

Sun, Jing;
Wu, Di;
Xu, Tianlei;
Wang, Xiaojing;
Xu, Xiaolian;
Tao, Lin;
Li, Y. X.;
Cao, Z. W.

Publication type:

Article

RosettaAntibody: antibody variable region homology modeling server.

Published in:

Nucleic Acids Research, 2009, v. 37, n. suppl_2, p. W474, doi. 10.1093/nar/gkp387

By:

Sircar, Aroop;
Kim, Eric T.;
Gray, Jeffrey J.

Publication type:

Article

PosMed (Positional Medline): prioritizing genes with an artificial neural network comprising medical documents to accelerate positional cloning.

Published in:

Nucleic Acids Research, 2009, v. 37, n. suppl_2, p. W147, doi. 10.1093/nar/gkp384

By:

Yoshida, Yuko;
Makita, Yuko;
Heida, Naohiko;
Asano, Satomi;
Matsushima, Akihiro;
Ishii, Manabu;
Mochizuki, Yoshiki;
Masuya, Hiroshi;
Wakana, Shigeharu;
Kobayashi, Norio;
Toyoda, Tetsuro

Publication type:

Article

iCODEHOP: a new interactive program for designing COnsensus-DEgenerate Hybrid Oligonucleotide Primers from multiply aligned protein sequences.

Published in:

Nucleic Acids Research, 2009, v. 37, n. suppl_2, p. W222, doi. 10.1093/nar/gkp379

By:

Boyce, Richard;
Chilana, Parmit;
Rose, Timothy M.

Publication type:

Article

primers4clades: a web server that uses phylogenetic trees to design lineage-specific PCR primers for metagenomic and diversity studies.

Published in:

Nucleic Acids Research, 2009, v. 37, n. suppl_2, p. W95, doi. 10.1093/nar/gkp377

By:

Contreras-Moreira, Bruno;
Sachman-Ruiz, Bernardo;
Figueroa-Palacios, Iraís;
Vinuesa, Pablo

Publication type:

Article

MirZ: an integrated microRNA expression atlas and target prediction resource.

Published in:

Nucleic Acids Research, 2009, v. 37, n. suppl_2, p. W266, doi. 10.1093/nar/gkp412

By:

Hausser, Jean;
Berninger, Philipp;
Rodak, Christoph;
Jantscher, Yvonne;
Wirth, Stefan;
Zavolan, Mihaela

Publication type:

Article

COPS—a novel workbench for explorations in fold space.

Published in:

Nucleic Acids Research, 2009, v. 37, n. suppl_2, p. W539, doi. 10.1093/nar/gkp411

By:

Suhrer, Stefan J.;
Wiederstein, Markus;
Gruber, Markus;
Sippl, Manfred J.

Publication type:

Article

HotSpot Wizard: a web server for identification of hot spots in protein engineering.

Published in:

Nucleic Acids Research, 2009, v. 37, n. suppl_2, p. W376, doi. 10.1093/nar/gkp410

By:

Pavelka, Antonin;
Chovancova, Eva;
Damborsky, Jiri

Publication type:

Article

PLecDom: a program for identification and analysis of plant lectin domains.

Published in:

Nucleic Acids Research, 2009, v. 37, n. suppl_2, p. W452, doi. 10.1093/nar/gkp409

By:

Shridhar, Smriti;
Chattopadhyay, Debasis;
Yadav, Gitanjali

Publication type:

Article

VisANT 3.5: multi-scale network visualization, analysis and inference based on the gene ontology.

Published in:

Nucleic Acids Research, 2009, v. 37, n. suppl_2, p. W115, doi. 10.1093/nar/gkp406

By:

Hu, Zhenjun;
Hung, Jui-Hung;
Wang, Yan;
Chang, Yi-Chien;
Huang, Chia-Ling;
Huyck, Matt;
DeLisi, Charles

Publication type:

Article

MolLoc: a web tool for the local structural alignment of molecular surfaces.

Published in:

Nucleic Acids Research, 2009, v. 37, n. suppl_2, p. W565, doi. 10.1093/nar/gkp405

By:

Angaran, Stefano;
Bock, Mary Ellen;
Garutti, Claudio;
Guerra, Concettina

Publication type:

Article

OmicBrowse: a Flash-based high-performance graphics interface for genomic resources.

Published in:

Nucleic Acids Research, 2009, v. 37, n. suppl_2, p. W57, doi. 10.1093/nar/gkp404

By:

Matsushima, Akihiro;
Kobayashi, Norio;
Mochizuki, Yoshiki;
Ishii, Manabu;
Kawaguchi, Shuji;
Endo, Takaho A.;
Umetsu, Ryo;
Makita, Yuko;
Toyoda, Tetsuro

Publication type:

Article

SAM-T08, HMM-based protein structure prediction.

Published in:

Nucleic Acids Research, 2009, v. 37, n. suppl_2, p. W492, doi. 10.1093/nar/gkp403

By:

Karplus, Kevin

Publication type:

Article

SNOW, a web-based tool for the statistical analysis of protein–protein interaction networks.

Published in:

Nucleic Acids Research, 2009, v. 37, n. suppl_2, p. W109, doi. 10.1093/nar/gkp402

By:

Minguez, Pablo;
Götz, Stefan;
Montaner, David;
Al-Shahrour, Fatima;
Dopazo, Joaquin

Publication type:

Article

SENT: semantic features in text.

Published in:

Nucleic Acids Research, 2009, v. 37, n. suppl_2, p. W153, doi. 10.1093/nar/gkp392

By:

Vazquez, Miguel;
Carmona-Saez, Pedro;
Nogales-Cadenas, Ruben;
Chagoyen, Monica;
Tirado, Francisco;
Carazo, Jose Maria;
Pascual-Montano, Alberto

Publication type:

Article

WebGMAP: a web service for mapping and aligning cDNA sequences to genomes.

Published in:

Nucleic Acids Research, 2009, v. 37, n. suppl_2, p. W77, doi. 10.1093/nar/gkp389

By:

Liang, Chun;
Liu, Lin;
Ji, Guoli

Publication type:

Article