Works matching IS 03051048 AND DT 2008 AND VI 36 AND IP 3

Results: 38

Microplate-based chromatin immunoprecipitation method, Matrix ChIP: a platform to study signaling of complex genomic events.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 3, p. e17, doi. 10.1093/nar/gkn001

By:

Flanagin, Steve;
Nelson, Joel D.;
Castner, David G.;
Denisenko, Oleg;
Bomsztyk, Karol

Publication type:

Article

Red flag on the white reporter: a versatile insulator abuts the white gene in Drosophila and is omnipresent in mini-white constructs.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 3, p. 929, doi. 10.1093/nar/gkm992

By:

Chetverina, Darya;
Savitskaya, Ekaterina;
Maksimenko, Oksana;
Melnikova, Larisa;
Zaytseva, Olga;
Parshikov, Alexander;
Galkin, Alexander V.;
Georgiev, Pavel

Publication type:

Article

2′-Methylseleno-modified oligoribonucleotides for X-ray crystallography synthesized by the ACE RNA solid-phase approach.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 3, p. 970, doi. 10.1093/nar/gkm880

By:

Puffer, Barbara;
Moroder, Holger;
Aigner, Michaela;
Micura, Ronald

Publication type:

Article

Analysis of intermolecular base pair formation of prohead RNA of the phage ø29 DNA packaging motor using NMR spectroscopy.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 3, p. 839, doi. 10.1093/nar/gkm874

By:

Kitamura, Aya;
Jardine, Paul J.;
Anderson, Dwight L.;
Grimes, Shelley;
Matsuo, Hiroshi

Publication type:

Article

HU binds and folds single-stranded DNA.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 3, p. 1026

By:

Kamashev, Dmitri;
Balandina, Anna;
Mazur, Alexey K.;
Arimondo, Paola B.;
Rouviere-Yaniv, Josette

Publication type:

Article

Codon choice in genes depends on flanking sequence information—implications for theoretical reverse translation.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 3, p. e16, doi. 10.1093/nar/gkm1181

By:

Sivaraman, Karthikeyan;
Seshasayee, AswinSaiNarain;
Tarwater, Patrick M.;
Cole, Alexander M.

Publication type:

Article

PAP-LMPCR for improved, allele-specific footprinting and automated chromatin fine structure analysis.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 3, p. e19, doi. 10.1093/nar/gkm1159

By:

Ingram, R.;
Gao, C.;
LeBon, J.;
Liu, Q.;
Mayoral, R. J.;
Sommer, S. S.;
Hoogenkamp, M.;
Riggs, A. D.;
Bonifer, C.

Publication type:

Article

μChIP—a rapid micro chromatin immunoprecipitation assay for small cell samples and biopsies.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 3, p. e15, doi. 10.1093/nar/gkm1158

By:

Dahl, John Arne;
Collas, Philippe

Publication type:

Article

ATR protects the genome against CGG·CCG-repeat expansion in Fragile X premutation mice.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 3, p. 1050

By:

Entezam, Ali;
Usdin, Karen

Publication type:

Article

Interaction of human tRNA-dihydrouridine synthase-2 with interferon-induced protein kinase PKR.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 3, p. 998

By:

Mittelstadt, Megan;
Frump, Andrea;
Khuu, TuAnh;
Fowlkes, Vennece;
Handy, Indhira;
Patel, Chandrashekhar V.;
Patel, Rekha C.

Publication type:

Article

Mutation adjacent to the active site tyrosine can enhance DNA cleavage and cell killing by the TOPRIM Gly to Ser mutant of bacterial topoisomerase I.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 3, p. 1017, doi. 10.1093/nar/gkm1126

By:

Cheng, Bokun;
Sorokin, Elena P.;
Tse-Dinh, Yuk-Ching

Publication type:

Article

Role of poly (A) tail as an identity element for mRNA nuclear export.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 3, p. 1037, doi. 10.1093/nar/gkm1120

By:

Fuke, Hiroyuki;
Ohno, Mutsuhito

Publication type:

Article

Creating a ribonuclease T-tat that preferentially recognizes and hydrolyzes HIV-1 TAR RNA in vitro and in vivo.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 3, p. 963

By:

Dow-Tien, Chen;
Yuan-Jhih, Tsai;
Alan, Lin

Publication type:

Article

Differentiation-dependent lysine 4 acetylation enhances MEF2C binding to DNA in skeletal muscle cells.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 3, p. 915

By:

Angelelli, Cecilia;
Magli, Alessandro;
Ferrari, Daniela;
Ganassi, Massimo;
Matafora, Vittoria;
Parise, Flavia;
Razzini, Giorgia;
Bachi, Angela;
Ferrari, Stefano;
Molinari, Susanna

Publication type:

Article

Human Pcf11 enhances degradation of RNA polymerase II-associated nascent RNA and transcriptional termination.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 3, p. 905

By:

West, Steven;
Proudfoot, Nicholas J.

Publication type:

Article

Impaired function of the phage-type RNA polymerase RpoTp in transcription of chloroplast genes is compensated by a second phage-type RNA polymerase.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 3, p. 785

By:

Swiatecka-Hagenbruch, Monika;
Emanuel, Carola;
Hedtke, Boris;
Liere, Karsten;
Börner, Thomas

Publication type:

Article

What drives the binding of minor groove-directed ligands to DNA hairpins?

Published in:

Nucleic Acids Research, 2008, v. 36, n. 3, p. 897, doi. 10.1093/nar/gkm1110

By:

Lah, Jurij;
Drobnak, Igor;
Dolinar, Marko;
Vesnaver, Gorazd

Publication type:

Article

Probing dynamics of HIV-1 nucleocapsid protein/target hexanucleotide complexes by 2-aminopurine.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 3, p. 885

By:

Avilov, S. V.;
Piemont, E.;
Shvadchak, V.;
de Rocquigny, H.;
Mély, Y.

Publication type:

Article

Structure-function analysis of the RNA helicase maleless.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 3, p. 950, doi. 10.1093/nar/gkm1108

By:

Izzo, Annalisa;
Regnard, Catherine;
Morales, Violette;
Kremmer, Elisabeth;
Becker, Peter B.

Publication type:

Article

Modulation of utrophin A mRNA stability in fast versus slow muscles via an AU-rich element and calcineurin signaling.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 3, p. 826

By:

Chakkalakal, Joe V.;
Miura, Pedro;
Bélanger, Guy;
Michel, Robin N.;
Jasmin, Bernard J.

Publication type:

Article

Genome-wide tracking of unmethylated DNA Alu repeats in normal and cancer cells.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 3, p. 770, doi. 10.1093/nar/gkm1105

By:

Rodriguez, Jairo;
Vives, Laura;
Jordà, Mireia;
Morales, Cristina;
Muñoz, Mar;
Vendrell, Elisenda;
Peinado, Miguel A.

Publication type:

Article

Comprehensive comparison of the interaction of the E2 master regulator with its cognate target DNA sites in 73 human papillomavirus types by sequence statistics.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 3, p. 756

By:

Sánchez, Ignacio E.;
Dellarole, Mariano;
Gaston, Kevin;
de Prat Gay, Gonzalo

Publication type:

Article

Diversity of preferred nucleotide sequences around the translation initiation codon in eukaryote genomes.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 3, p. 861

By:

Nakagawa, So;
Niimura, Yoshihito;
Gojobori, Takashi;
Tanaka, Hiroshi;
Miura, Kin-ichiro

Publication type:

Article

Solution structures of 2 : 1 and 1 : 1 DNA polymerase–DNA complexes probed by ultracentrifugation and small-angle X-ray scattering.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 3, p. 849, doi. 10.1093/nar/gkm1101

By:

Tang, Kuo-Hsiang;
Niebuhr, Marc;
Aulabaugh, Ann;
Tsai, Ming-Daw

Publication type:

Article

Dlx2 homeobox gene transcriptional regulation of Trkb neurotrophin receptor expression during mouse retinal development.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 3, p. 872, doi. 10.1093/nar/gkm1099

By:

de Melo, Jimmy;
Zhou, Qing-Ping;
Zhang, Qi;
Zhang, Shunzhen;
Fonseca, Mario;
Wigle, Jeffrey T.;
Eisenstat, David D.

Publication type:

Article

The U1, U2 and U5 snRNAs crosslink to the 5′ exon during yeast pre-mRNA splicing.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 3, p. 814, doi. 10.1093/nar/gkm1098

By:

McGrail, Joanne C.;
O’Keefe, Raymond T.

Publication type:

Article

Developmentally regulated cleavage of tRNAs in the bacterium Streptomyces coelicolor.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 3, p. 732, doi. 10.1093/nar/gkm1096

By:

Haiser, Henry J.;
Karginov, Fedor V.;
Hannon, Gregory J.;
Elliot, Marie A.

Publication type:

Article

Site specific phosphorylation of yeast RNA polymerase I.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 3, p. 793, doi. 10.1093/nar/gkm1093

By:

Gerber, Jochen;
Reiter, Alarich;
Steinbauer, Robert;
Jakob, Steffen;
Kuhn, Claus-Dieter;
Cramer, Patrick;
Griesenbeck, Joachim;
Milkereit, Philipp;
Tschochner, Herbert

Publication type:

Article

Oxidation of single-stranded oligonucleotides by carbonate radical anions: generating intrastrand cross-links between guanine and thymine bases separated by cytosines.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 3, p. 742, doi. 10.1093/nar/gkm1092

By:

Crean, Conor;
Uvaydov, Yuriy;
Geacintov, Nicholas E.;
Shafirovich, Vladimir

Publication type:

Article

ERK is a novel regulatory kinase for poly(A) polymerase.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 3, p. 803

By:

Lee, Seol-Hoon;
Choi, Hyun-Sook;
Kim, Hana;
Lee, Younghoon

Publication type:

Article

Tetrameric restriction enzymes: expansion to the GIY-YIG nuclease family.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 3, p. 938

By:

Gasiunas, Giedrius;
Sasnauskas, Giedrius;
Tamulaitis, Gintautas;
Urbanke, Claus;
Razaniene, Dalia;
Siksnys, Virginijus

Publication type:

Article

AZT resistance of simian foamy virus reverse transcriptase is based on the excision of AZTMP in the presence of ATP.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 3, p. 1009

By:

Hartl, Maximilian J.;
Kretzschmar, Benedikt;
Frohn, Anne;
Nowrouzi, Ali;
Rethwilm, Axel;
Wöhrl, Birgitta M.

Publication type:

Article

Targeted induction of meiotic double-strand breaks reveals chromosomal domain-dependent regulation of Spo11 and interactions among potential sites of meiotic recombination.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 3, p. 984, doi. 10.1093/nar/gkm1082

By:

Fukuda, Tomoyuki;
Kugou, Kazuto;
Sasanuma, Hiroyuki;
Shibata, Takehiko;
Ohta, Kunihiro

Publication type:

Article

Quantitative telomeric overhang determination using a double-strand specific nuclease.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 3, p. e14

By:

Zhao, Yong;
Hoshiyama, Hirotoshi;
Shay, Jerry W.;
Wright, Woodring E.

Publication type:

Article

RNA chaperoning and intrinsic disorder in the core proteins of Flaviviridae.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 3, p. 712, doi. 10.1093/nar/gkm1051

By:

Ivanyi-Nagy, Roland;
Lavergne, Jean-Pierre;
Gabus, Caroline;
Ficheux, Damien;
Darlix, Jean-Luc

Publication type:

Article

Short-hairpin RNAs synthesized by T7 phage polymerase do not induce interferon.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 3, p. e18

By:

Gondai, Takuma;
Yamaguchi, Kazuya;
Miyano-Kurosaki, Naoko;
Habu, Yuichirou;
Takaku, Hiroshi

Publication type:

Article

Ab initio thermodynamic modeling of distal multisite transcription regulation.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 3, p. 726

By:

Saiz, Leonor;
Vilar, Jose M. G.

Publication type:

Article

Uracil recognition by replicative DNA polymerases is limited to the archaea, not occurring with bacteria and eukarya.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 3, p. 705, doi. 10.1093/nar/gkm1023

By:

Wardle, Josephine;
Burgers, Peter M. J.;
Cann, Isaac K. O.;
Darley, Kate;
Heslop, Pauline;
Johansson, Erik;
Lin, Li-Jung;
McGlynn, Peter;
Sanvoisin, Jonathan;
Stith, Carrie M.;
Connolly, Bernard A.

Publication type:

Article