Works matching IS 03051048 AND DT 2006 AND VI 34 AND IP 11

Results: 179

Dpb11, the budding yeast homolog of TopBP1, functions with the checkpoint clamp in recombination repair.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 11, p. 3389, doi. 10.1093/nar/gkl411

By:

Hideaki Ogiwara;
Ayako Ui;
Fumitoshi Onoda;
Shusuke Tada;
Takemi Enomoto;
Masayuki Seki

Publication type:

Article

Detecting non-orthology in the COGs database and other approaches grouping orthologs using genome-specific best hits.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 11, p. 3309, doi. 10.1093/nar/gkl433

By:

Dessimoz, Christophe;
Boeckmann, Brigitte;
Roth, Alexander C. J.;
Gonnet, Gaston H.

Publication type:

Article

Genomic overview of mRNA 5′-leader trans-splicing in the ascidian Ciona intestinalis.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 11, p. 3378, doi. 10.1093/nar/gkl418

By:

Yutaka Satou;
Makoto Hamaguchi;
Keisuke Takeuchi;
Hastings, Kenneth E. M.;
Nori Satoh

Publication type:

Article

Homologous recombination is required for AAV-mediated gene targeting.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 11, p. 3345, doi. 10.1093/nar/gkl455

By:

Vasileva, Ana;
Linden, R. Michael;
Jessberger, Rolf

Publication type:

Article

Rapid and sensitive detection of CpG-methylation using methyl-binding (MB)-PCR.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 11, p. 1, doi. 10.1093/nar/gkl437

By:

Gebhard, Claudia;
Schwarzfischer, Lucia;
Pham, Thu Hang;
Andreesen, Reinhard;
Mackensen, Andreas;
Rehli, Michael

Publication type:

Article

Molecular Zipper: a fluorescent probe for real-time isothermal DNA amplification.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 11, p. 1, doi. 10.1093/nar/gkl261

By:

Yi, Jizu;
Zhang, Wandi;
Zhang, David Y.

Publication type:

Article

Information-driven protein–DNA docking using HADDOCK: it is a matter of flexibility.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 11, p. 3317, doi. 10.1093/nar/gkl412

By:

van Dijk, Marc;
van Dijk, Aalt D. J.;
Hsu, Victor;
Boelens, Rolf;
Bonvin, Alexandre M. J. J.

Publication type:

Article

SAP30L interacts with members of the Sin3A corepressor complex and targets Sin3A to the nucleolus.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 11, p. 3288, doi. 10.1093/nar/gkl401

By:

Viiri, K. M.;
Korkeamäki, H.;
Kukkonen, M. K.;
Nieminen, L. K.;
Lindfors, K.;
Peterson, P.;
Mäki, M.;
Kainulainen, H.;
Lohi, O.

Publication type:

Article

Genes invoked in the ovarian transition to menopause.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 11, p. 3279, doi. 10.1093/nar/gkl387

By:

Zimon, Alison;
Erat, Anna;
Von Wald, Tiffany;
Bissell, Brad;
Koulova, Anna;
Choi, Chu H.;
Bachvarov, Dimcho;
Reindollar, Richard H.;
Usheva, Anny

Publication type:

Article

Phosphoproteomics reveals extensive in vivo phosphorylation of Arabidopsis proteins involved in RNA metabolism.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 11, p. 3267, doi. 10.1093/nar/gkl429

By:

de la Fuente van Bentem, Sergio;
Anrather, Dorothea;
Roitinger, Elisabeth;
Djamei, Armin;
Hufnagl, Thomas;
Barta, Andrea;
Csaszar, Edina;
Dohnal, Ilse;
Lecourieux, David;
Hirt, Heribert

Publication type:

Article

Short, synthetic and selectively 13C-labeled RNA sequences for the NMR structure determination of protein–RNA complexes.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 11, p. 1, doi. 10.1093/nar/gkl427

By:

Wenter, Philipp;
Reymond, Luc;
Auweter, Sigrid D.;
Allain, Frédéric H.-T.;
Pitsch, Stefan

Publication type:

Article

Methylation enrichment pyrosequencing: combining the specificity of MSP with validation by pyrosequencing.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 11, p. 1, doi. 10.1093/nar/gkl424

By:

Shaw, Richard J.;
Akufo-Tetteh, Emily K.;
Risk, Janet M.;
Field, John K.;
Liloglou, Triantafillos

Publication type:

Article

Ultra fast miniaturized real-time PCR: 40 cycles in less than six minutes.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 11, p. 1, doi. 10.1093/nar/gkl416

By:

Neuzil, Pavel;
Chunyan Zhang;
Pipper, Juergen;
Oh, Sharon;
Lang Zhuo

Publication type:

Article

Structure of human tryptophanyl-tRNA synthetase in complex with tRNATrp reveals the molecular basis of tRNA recognition and specificity.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 11, p. 3246, doi. 10.1093/nar/gkl441

By:

Ning Shen;
Litao Guo;
Bei Yang;
Youxin Jin;
Jianping Ding

Publication type:

Article

Recombination R-triplex: H-bonds contribution to stability as revealed with minor base substitutions for adenine.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 11, p. 3239, doi. 10.1093/nar/gkl431

By:

Shchyolkina, Anna K.;
Kaluzhny, Dmitry N.;
Arndt-Jovin, Donna J.;
Jovin, Thomas M.;
Zhurkin, Victor B.

Publication type:

Article

Novel oligodeoxynucleotide agonists of TLR9 containing N3-Me-dC or N1-Me-dG modifications.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 11, p. 3231, doi. 10.1093/nar/gkl430

By:

Putta, Mallikarjuna Reddy;
FuGang Zhu;
Yukui Li;
Bhagat, Lakshmi;
YanPing Cong;
Kandimalla, Ekambar R.;
Agrawal, Sudhir

Publication type:

Article

RNA helicases and abiotic stress.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 11, p. 3220, doi. 10.1093/nar/gkl408

By:

Owttrim, George W.

Publication type:

Article

PrrC-anticodon nuclease: functional organization of a prototypical bacterial restriction RNase.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 11, p. 3209, doi. 10.1093/nar/gkl415

By:

Blanga-Kanfi, Shani;
Amitsur, Michal;
Azem, Abdussalam;
Kaufmann, Gabriel

Publication type:

Article

Multiple-turnover thio-ATP hydrolase and phospho-enzyme intermediate formation activities catalyzed by an RNA enzyme.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 11, p. 3201, doi. 10.1093/nar/gkl413

By:

Saran, Dayal;
Held, Daniel M.;
Burke, Donald H.

Publication type:

Article

Primer Extension Enrichment Reaction (PEER): a new subtraction method for identification of genetic differences between biological specimens.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 11, p. 1, doi. 10.1093/nar/gkl391

By:

Ganova-Raeva, Lilia;
Xinjian Zhang;
Fengli Cao;
Fields, Howard;
Yury Khudyakov

Publication type:

Article

Cytoplasmic expression systems triggered by mRNA yield increased gene expression in post-mitotic neurons.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 11, p. e80, doi. 10.1093/nar/gkl442

By:

Farrow, Paul J.;
Barrett, Lee B.;
Stevenson, Mark;
Fisher, Kerry D.;
Finn, Jonathan;
Spice, Rachel;
Allan, Michael A.;
Berry, Martin;
Logan, Ann;
Seymour, Leonard W.;
Read, Martin L.

Publication type:

Article

Secondary structure effects on DNA hybridization kinetics: a solution versus surface comparison.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 11, p. 3370, doi. 10.1093/nar/gkl422

By:

Yang Gao;
Wolf, Lauren K.;
Georgiadis, Rosina M.

Publication type:

Article

Prediction of CsrA-regulating small RNAs in bacteria and their experimental verification in Vibrio fischeri.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 11, p. 3361, doi. 10.1093/nar/gkl439

By:

Kulkarni, Prajna R.;
Cui, Xiaohui;
Williams, Joshua W.;
Stevens, Ann M.;
Kulkarni, Rahul V.

Publication type:

Article

A test of the model that RNA polymerase III transcription is regulated by selective induction of the 110 kDa subunit of TFIIIC.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 11, p. 3399, doi. 10.1093/nar/gkl432

By:

Innes, Fiona;
Ramsbottom, Ben;
White, Robert J.

Publication type:

Article

Mutagenic nucleotide incorporation and hindered translocation by a food carcinogen C8-dG adduct in Sulfolobus solfataricus P2 DNA polymerase IV (Dpo4): modeling and dynamics studies.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 11, p. 3326, doi. 10.1093/nar/gkl425

By:

Ling Zhang;
Rechkoblit, Olga;
Lihua Wang;
Patel, Dinshaw J.;
Shapiro, Robert;
Broyde, Suse

Publication type:

Article

Metabolic regulation of ApoB mRNA editing is associated with phosphorylation of APOBEC-1 complementation factor.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 11, p. 3299, doi. 10.1093/nar/gkl417

By:

Lehmann, David M.;
Galloway, Chad A.;
Sowden, Mark P.;
Smith, Harold C.

Publication type:

Article

Comprehensive thermodynamic analysis of 3′ double-nucleotide overhangs neighboring Watson–Crick terminal base pairs.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 11, p. 3338, doi. 10.1093/nar/gkl428

By:

O’Toole, Amanda S.;
Miller, Stacy;
Haines, Nathan;
Zink, M. Coleen;
Serra, Martin J.

Publication type:

Article

Promiscuous mismatch extension by human DNA polymerase lambda.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 11, p. 3259, doi. 10.1093/nar/gkl377

By:

Picher, Angel J.;
García-Díaz, Miguel;
Bebenek, Katarzyna;
Pedersen, Lars C.;
Kunkel, Thomas A.;
Blanco, Luis

Publication type:

Article

EDITORIAL.

Published in:: Nucleic Acids Research, 2006, v. 34, n. 11, p. w1, doi. 10.1093/nar/gkl385
Publication type:: Article

A compilation of molecular biology web servers: 2006 update on the Bioinformatics Links Directory.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 11, p. w3, doi. 10.1093/nar/gkl379

By:

Fox, Joanne A.;
McMillan, Scott;
Ouellette, B. F. Francis

Publication type:

Article

Localizome: a server for identifying transmembrane topologies and TM helices of eukaryotic proteins utilizing domain information.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 11, p. w99, doi. 10.1093/nar/gkl351

By:

Lee, Sunghoon;
Lee, Byungwook;
Jang, Insoo;
Kim, Sangsoo;
Bhak, Jong

Publication type:

Article

Protemot: prediction of protein binding sites with automatically extracted geometrical templates.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 11, p. w303, doi. 10.1093/nar/gkl344

By:

Chang, Darby Tien-Hao;
Weng, Yi-Zhong;
Lin, Jung-Hsin;
Hwang, Ming-Jing;
Oyang, Yen-Jen

Publication type:

Article

AlgPred: prediction of allergenic proteins and mapping of IgE epitopes.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 11, p. w202, doi. 10.1093/nar/gkl343

By:

Saha, Sudipto;
Raghava, G. P. S.

Publication type:

Article

Composite Module Analyst: identification of transcription factor binding site combinations using genetic algorithm.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 11, p. w541, doi. 10.1093/nar/gkl342

By:

Waleev, T.;
Shtokalo, D.;
Konovalova, T.;
Voss, N.;
Cheremushkin, E.;
Stegmaier, P.;
Kel-Margoulis, O.;
Wingender, E.;
Kel, A.

Publication type:

Article

PREDITOR: a web server for predicting protein torsion angle restraints.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 11, p. w63, doi. 10.1093/nar/gkl341

By:

Berjanskii, Mark V.;
Neal, Stephen;
Wishart, David S.

Publication type:

Article

TOM: a web-based integrated approach for identification of candidate disease genes.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 11, p. w285, doi. 10.1093/nar/gkl340

By:

Rossi, Simona;
Masotti, Daniele;
Nardini, Christine;
Bonora, Elena;
Romeo, Giovanni;
Macii, Enrico;
Benini, Luca;
Volinia, Stefano

Publication type:

Article

FeatureScan: revealing property-dependent similarity of nucleotide sequences.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 11, p. w591, doi. 10.1093/nar/gkl337

By:

Deyneko, Igor V.;
Bredohl, Björn;
Wesely, Daniel;
Kalybaeva, Yulia M.;
Kel, Alexander E.;
Blöcker, Helmut;
Kauer, Gerhard

Publication type:

Article

RegRNA: an integrated web server for identifying regulatory RNA motifs and elements.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 11, p. w429, doi. 10.1093/nar/gkl333

By:

Huang, Hsi-Yuan;
Chien, Chia-Hung;
Jen, Kuan-Hua;
Huang, Hsien-Da

Publication type:

Article

DOUTfinder—identification of distant domain outliers using subsignificant sequence similarity.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 11, p. w214, doi. 10.1093/nar/gkl332

By:

Novatchkova, Maria;
Schneider, Georg;
Fritz, Richard;
Eisenhaber, Frank;
Schleiffer, Alexander

Publication type:

Article

KemaDom: a web server for domain prediction using kernel machine with local context.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 11, p. w158, doi. 10.1093/nar/gkl331

By:

Chen, Lusheng;
Wang, Wei;
Ling, Shaoping;
Jia, Caiyan;
Wang, Fei

Publication type:

Article

FISH—family identification of sequence homologues using structure anchored hidden Markov models.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 11, p. w10, doi. 10.1093/nar/gkl330

By:

Tångrot, Jeanette;
Wang, Lixiao;
Kågström, Bo;
Sauer, Uwe H.

Publication type:

Article

JProGO: a novel tool for the functional interpretation of prokaryotic microarray data using Gene Ontology information.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 11, p. w510, doi. 10.1093/nar/gkl329

By:

Scheer, Maurice;
Klawonn, Frank;
Münch, Richard;
Grote, Andreas;
Hiller, Karsten;
Choi, Claudia;
Koch, Ina;
Schobert, Max;
Härtig, Elisabeth;
Klages, Ulrich;
Jahn, Dieter

Publication type:

Article

ASPIC: a web resource for alternative splicing prediction and transcript isoforms characterization.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 11, p. w440, doi. 10.1093/nar/gkl324

By:

Castrignanò, Tiziana;
Rizzi, Raffaella;
Talamo, Ivano Giuseppe;
De Meo, Paolo D'Onorio;
Anselmo, Anna;
Bonizzoni, Paola;
Pesole, Graziano

Publication type:

Article

SNP@Domain: a web resource of single nucleotide polymorphisms (SNPs) within protein domain structures and sequences.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 11, p. w642, doi. 10.1093/nar/gkl323

By:

Han, Areum;
Kang, Hyo Jin;
Cho, Yoobok;
Lee, Sunghoon;
Kim, Young Joo;
Gong, Sungsam

Publication type:

Article

CEAS: cis-regulatory element annotation system.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 11, p. w551

By:

Ji, Xuwo;
Li, Wei;
Song, Jun;
Wei, Liping;
Liu, X. Shirley

Publication type:

Article

ProMiR II: a web server for the probabilistic prediction of clustered, nonclustered, conserved and nonconserved microRNAs.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 11, p. w455, doi. 10.1093/nar/gkl321

By:

Nam, Jin-Wu;
Kim, Jinhan;
Kim, Sung-Kyu;
Zhang, Byoung-Tak

Publication type:

Article

Taverna: a tool for building and running workflows of services.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 11, p. w729, doi. 10.1093/nar/gkl320

By:

Hull, Duncan;
Wolstencroft, Katy;
Stevens, Robert;
Goble, Carole;
Pocock, Mathew R.;
Li, Peter;
Oinn, Tom

Publication type:

Article

PAL2NAL: robust conversion of protein sequence alignments into the corresponding codon alignments.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 11, p. w609, doi. 10.1093/nar/gkl315

By:

Suyama, Mikita;
Torrents, David;
Bork, Peer

Publication type:

Article

HARMONY: a server for the assessment of protein structures.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 11, p. w231, doi. 10.1093/nar/gkl314

By:

Pugalenthi, G.;
Shameer, K.;
Srinivasan, N.;
Sowdhamini, R.

Publication type:

Article

TICO: a tool for postprocessing the predictions of prokaryotic translation initiation sites.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 11, p. w588, doi. 10.1093/nar/gkl313

By:

Tech, M.;
Morgenstern, B.;
Meinicke, P.

Publication type:

Article