Results: 161
The Bioinformatics Links Directory: a Compilation of Molecular Biology Web Servers.
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- Nucleic Acids Research, 2005, v. 33, n. suppl 2, p. w3, doi. 10.1093/nar/gki594
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BASys: a web server for automated bacterial genome annotation.
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- Nucleic Acids Research, 2005, v. 33, n. suppl 2, p. w455, doi. 10.1093/nar/gki593
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EDITORIAL.
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- Nucleic Acids Research, 2005, v. 33, n. suppl 2, p. w1, doi. 10.1093/nar/gki592
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DINAMelt web server for nucleic acid melting prediction.
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- Nucleic Acids Research, 2005, v. 33, n. suppl 2, p. w577, doi. 10.1093/nar/gki591
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T-Reg Comparator: an analysis tool for the comparison of position weight matrices.
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- Nucleic Acids Research, 2005, v. 33, n. suppl 2, p. w438, doi. 10.1093/nar/gki590
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SVC: structured visualization of evolutionary sequence conservation.
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- Nucleic Acids Research, 2005, v. 33, n. suppl 2, p. w271, doi. 10.1093/nar/gki589
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BhairPred: prediction of β-hairpins in a protein from multiple alignment information using ANN and SVM techniques.
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- Nucleic Acids Research, 2005, v. 33, n. suppl 2, p. w154, doi. 10.1093/nar/gki588
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Pcleavage: an SVM based method for prediction of constitutive proteasome and immunoproteasome cleavage sites in antigenic sequences.
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- Nucleic Acids Research, 2005, v. 33, n. suppl 2, p. w202, doi. 10.1093/nar/gki587
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MEDock: a web server for efficient prediction of ligand binding sites based on a novel optimization algorithm.
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- Nucleic Acids Research, 2005, v. 33, n. suppl 2, p. w233, doi. 10.1093/nar/gki586
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PRISM: protein interactions by structural matching.
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- Nucleic Acids Research, 2005, v. 33, n. suppl 2, p. w331, doi. 10.1093/nar/gki585
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GEPAS, an experiment-oriented pipeline for the analysis of microarray gene expression data.
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- Nucleic Acids Research, 2005, v. 33, n. suppl 2, p. w616, doi. 10.1093/nar/gki500
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pdbFun: mass selection and fast comparison of annotated PDB residues.
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- Nucleic Acids Research, 2005, v. 33, n. suppl 2, p. w133, doi. 10.1093/nar/gki499
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MICheck: a web tool for fast checking of syntactic annotations of bacterial genomes.
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- Nucleic Acids Research, 2005, v. 33, n. suppl 2, p. w471, doi. 10.1093/nar/gki498
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MIDAW: a web tool for statistical analysis of microarray data.
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- Nucleic Acids Research, 2005, v. 33, n. suppl 2, p. w644, doi. 10.1093/nar/gki497
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QuasiMotiFinder: protein annotation by searching for evolutionarily conserved motif-like patterns.
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- Nucleic Acids Research, 2005, v. 33, n. suppl 2, p. w255, doi. 10.1093/nar/gki496
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GRIFFIN: a system for predicting GPCR–G-protein coupling selectivity using a support vector machine and a hidden Markov model.
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- Nucleic Acids Research, 2005, v. 33, n. suppl 2, p. w148, doi. 10.1093/nar/gki495
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POWER: PhylOgenetic WEb Repeater—an integrated and user-optimized framework for biomolecular phylogenetic analysis.
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- Nucleic Acids Research, 2005, v. 33, n. suppl 2, p. w553, doi. 10.1093/nar/gki494
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SCANMOT: searching for similar sequences using a simultaneous scan of multiple sequence motifs.
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- Nucleic Acids Research, 2005, v. 33, n. suppl 2, p. w274, doi. 10.1093/nar/gki493
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WordSpy: identifying transcription factor binding motifs by building a dictionary and learning a grammar.
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- Nucleic Acids Research, 2005, v. 33, n. suppl 2, p. w412, doi. 10.1093/nar/gki492
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SOAP-based services provided by the European Bioinformatics Institute.
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- Nucleic Acids Research, 2005, v. 33, n. suppl 2, p. w25, doi. 10.1093/nar/gki491
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RACE: Remote Analysis Computation for gene Expression data.
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- Nucleic Acids Research, 2005, v. 33, n. suppl 2, p. w638, doi. 10.1093/nar/gki490
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GENSTYLE: exploration and analysis of DNA sequences with genomic signature.
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- Nucleic Acids Research, 2005, v. 33, n. suppl 2, p. w512, doi. 10.1093/nar/gki489
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One-Block CYRCA: an automated procedure for identifying multiple-block alignments from single block queries.
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- Nucleic Acids Research, 2005, v. 33, n. suppl 2, p. w281, doi. 10.1093/nar/gki488
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GeneMark: web software for gene finding in prokaryotes, eukaryotes and viruses.
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- Nucleic Acids Research, 2005, v. 33, n. suppl 2, p. w451, doi. 10.1093/nar/gki487
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CisMols Analyzer: identification of compositionally similar cis-element clusters in ortholog conserved regions of coordinately expressed genes.
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- Nucleic Acids Research, 2005, v. 33, n. suppl 2, p. w408, doi. 10.1093/nar/gki486
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MovieMaker: a web server for rapid rendering of protein motions and interactions.
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- Nucleic Acids Research, 2005, v. 33, n. suppl 2, p. w358, doi. 10.1093/nar/gki485
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T-profiler: scoring the activity of predefined groups of genes using gene expression data.
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- Nucleic Acids Research, 2005, v. 33, n. suppl 2, p. w592, doi. 10.1093/nar/gki484
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SOP<sup>3</sup>v2: web-based selection of oligonucleotide primer trios for genotyping of human and mouse polymorphisms.
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- Nucleic Acids Research, 2005, v. 33, n. suppl 2, p. w548, doi. 10.1093/nar/gki483
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SiteEngines: recognition and comparison of binding sites and protein–protein interfaces.
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- Nucleic Acids Research, 2005, v. 33, n. suppl 2, p. w337, doi. 10.1093/nar/gki482
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PatchDock and SymmDock: servers for rigid and symmetric docking.
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- Nucleic Acids Research, 2005, v. 33, n. suppl 2, p. w363, doi. 10.1093/nar/gki481
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GBA server: EST-based digital gene expression profiling.
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- Nucleic Acids Research, 2005, v. 33, n. suppl 2, p. w673
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PRED<sup>BALB/c</sup>: a system for the prediction of peptide binding to H2<sup>d</sup> molecules, a haplotype of the BALB/c mouse.
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- Nucleic Acids Research, 2005, v. 33, n. suppl 2, p. w180, doi. 10.1093/nar/gki479
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YASS: enhancing the sensitivity of DNA similarity search.
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- Nucleic Acids Research, 2005, v. 33, n. suppl 2, p. w540, doi. 10.1093/nar/gki478
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RPBS: a web resource for structural bioinformatics.
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- Nucleic Acids Research, 2005, v. 33, n. suppl 2, p. w44, doi. 10.1093/nar/gki477
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PupasView: a visual tool for selecting suitable SNPs, with putative pathological effect in genes, for genotyping purposes.
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- Nucleic Acids Research, 2005, v. 33, n. suppl 2, p. w501, doi. 10.1093/nar/gki476
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WebGestalt: an integrated system for exploring gene sets in various biological contexts.
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- Nucleic Acids Research, 2005, v. 33, n. suppl 2, p. w741, doi. 10.1093/nar/gki475
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PRODOC: a resource for the comparison of tethered protein domain architectures with in-built information on remotely related domain families.
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- Nucleic Acids Research, 2005, v. 33, n. suppl 2, p. w126, doi. 10.1093/nar/gki474
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The <EM t="s">foldalign</EM> web server for pairwise structural RNA alignment and mutual motif search.
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- Nucleic Acids Research, 2005, v. 33, n. suppl 2, p. w650, doi. 10.1093/nar/gki473
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Recent additions and improvements to the Onto-Tools.
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- Nucleic Acids Research, 2005, v. 33, n. suppl 2, p. w762, doi. 10.1093/nar/gki472
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KinasePhos: a web tool for identifying protein kinase-specific phosphorylation sites.
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- Nucleic Acids Research, 2005, v. 33, n. suppl 2, p. w226, doi. 10.1093/nar/gki471
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GoPubMed: exploring PubMed with the Gene Ontology.
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- Nucleic Acids Research, 2005, v. 33, n. suppl 2, p. w783, doi. 10.1093/nar/gki470
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GEMS: a web server for biclustering analysis of expression data.
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- Nucleic Acids Research, 2005, v. 33, n. suppl 2, p. w596
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E-RNAi: a web application to design optimized RNAi constructs.
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- Nucleic Acids Research, 2005, v. 33, n. suppl 2, p. w582, doi. 10.1093/nar/gki468
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POCO: discovery of regulatory patterns from promoters of oppositely expressed gene sets.
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- Nucleic Acids Research, 2005, v. 33, n. suppl 2, p. w427, doi. 10.1093/nar/gki467
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Identifying synonymous regulatory elements in vertebrate genomes.
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- Nucleic Acids Research, 2005, v. 33, n. suppl 2, p. w403, doi. 10.1093/nar/gki466
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MINER: software for phylogenetic motif identification.
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- Nucleic Acids Research, 2005, v. 33, n. suppl 2, p. w267
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H++: a server for estimating pK<sub>a</sub>s and adding missing hydrogens to macromolecules.
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- Nucleic Acids Research, 2005, v. 33, n. suppl 2, p. w368, doi. 10.1093/nar/gki464
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Integrating protein annotation resources through the Distributed Annotation System.
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- Nucleic Acids Research, 2005, v. 33, n. suppl 2, p. w468, doi. 10.1093/nar/gki463
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SNPServer: a real-time SNP discovery tool.
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- Nucleic Acids Research, 2005, v. 33, n. suppl 2, p. w493, doi. 10.1093/nar/gki462
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DeNovoID: a web-based tool for identifying peptides from sequence and mass tags deduced from de novo peptide sequencing by mass spectroscopy.
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- Nucleic Acids Research, 2005, v. 33, n. suppl 2, p. w376, doi. 10.1093/nar/gki461
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