Works matching IS 03051048 AND DT 2005 AND VI 33 AND IP 3

Results: 43

Comparisons of substitution, insertion and deletion probes for resequencing and mutational analysis using oligonucleotide microarrays.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 3, p. e33, doi. 10.1093/nar/gni034

By:

Karaman, Mazen W.;
Groshen, Susan;
Lee, Chi-Chiang;
Pike, Brian L.;
Hacia, Joseph G.

Publication type:

Article

Discovery of active proteins directly from combinatorial randomized protein libraries without display, purification or sequencing: identification of novel zinc finger proteins.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 3, p. e32, doi. 10.1093/nar/gni031

By:

Hughes, Marcus D.;
Zhang, Zhan-Ren;
Sutherland, Andrew J.;
Santos, Albert F.;
Hine, Anna V.

Publication type:

Article

Use of mRNA- and protein-destabilizing elements to develop a highly responsive reporter system.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 3, p. e27, doi. 10.1093/nar/gni030

By:

Voon, Dominic C.;
Subrata, Lily S.;
Baltic, Svetlana;
Leu, Marco P.;
Whiteway, Joanna M.;
Wong, Agnes;
Knight, Samuel A.;
Christiansen, Frank T.;
Daly, John M.

Publication type:

Article

Effective transcriptome amplification for expression profiling on sense-oriented oligonucleotide microarrays.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 3, p. e29, doi. 10.1093/nar/gni029

By:

Schlingemann, Joerg;
Thuerigen, Olaf;
Ittrich, Carina;
Toedt, Grischa;
Kramer, Heidi;
Hahn, Meinhard;
Lichter, Peter

Publication type:

Article

A sequence-based identification of the genes detected by probesets on the Affymetrix U133 plus 2.0 array.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 3, p. e31, doi. 10.1093/nar/gni027

By:

Harbig, Jeremy;
Sprinkle, Robert;
Enkemann, Steven A.

Publication type:

Article

A central resource for accurate allele frequency estimation from pooled DNA genotyped on DNA microarrays.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 3, p. e25, doi. 10.1093/nar/gni028

By:

Simpson, Claire L.;
Knight, Joanne;
Butcher, Lee M.;
Hansen, Valerie K.;
Meaburn, Emma;
Schalkwyk, Leonard C.;
Craig, Ian W.;
Powell, John F.;
Sham, Pak C.;
Al-Chalabi, Ammar

Publication type:

Article

siRNA target site secondary structure predictions using local stable substructures.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 3, p. e30, doi. 10.1093/nar/gni026

By:

Heale, Bret S. E.;
Soifer, Harris S.;
Bowers, Chauncey;
Rossi, John J.

Publication type:

Article

Reproducibility, bioinformatic analysis and power of the SAGE method to evaluate changes in transcriptome.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 3, p. e26, doi. 10.1093/nar/gni025

By:

Dinel, S.;
Bolduc, C.;
Belleau, P.;
Boivin, A.;
Yoshioka, M.;
Calvo, E.;
Piedboeuf, B.;
Snyder, E. E.;
Labrie, F.;
St-Amand, J.

Publication type:

Article

Identification of antisense nucleic acid hybridization sites in mRNA molecules with self-quenching fluorescent reporter molecules.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 3, p. e28, doi. 10.1093/nar/gni024

By:

Gifford, Lida K.;
Opalinska, Joanna B.;
Jordan, David;
Pattanayak, Vikram;
Greenham, Paul;
Kalota, Anna;
Robbins, Michelle;
Vernovsky, Kathy;
Rodriguez, Lesbeth C.;
Do, Bao T.;
Lu, Ponzy;
Gewirtz, Alan M.

Publication type:

Article

Transposon-mediated generation of targeting vectors for the production of gene knockouts.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 3, p. e24, doi. 10.1093/nar/gni014

By:

Zhang, Chunfang;
Kitsberg, Danny;
Chy, Hun;
Zhou, Qi;
Morrison, John R.

Publication type:

Article

Functional characterization of the mitochondrial 12S rRNA C1494T mutation associated with aminoglycoside-induced and non-syndromic hearing loss.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 3, p. 1132, doi. 10.1093/nar/gki262

By:

Zhao, Hui;
Young, Wie-Yen;
Yan, Qingfeng;
Li, Ronghua;
Cao, Juyang;
Wang, Qiuju;
Li, Xiaoming;
Peters, Jennifer L.;
Han, Dongyi;
Guan, Min-Xin

Publication type:

Article

Relative predicted protein levels of functionally associated proteins are conserved across organisms.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 3, p. 1051, doi. 10.1093/nar/gki261

By:

Lithwick, Gila;
Margalit, Hanah

Publication type:

Article

The unusually large Plasmodium telomerase reverse-transcriptase localizes in a discrete compartment associated with the nucleolus.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 3, p. 1111, doi. 10.1093/nar/gki260

By:

Figueiredo, Luisa M.;
Rocha, Eduardo P. C.;
Mancio-Silva, Liliana;
Prevost, Christine;
Hernandez-Verdun, Danièle;
Scherf, Artur

Publication type:

Article

Biochemical characterization and DNA repair pathway interactions of Mag1-mediated base excision repair in Schizosaccharomyces pombe.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 3, p. 1123, doi. 10.1093/nar/gki259

By:

Alseth, Ingrun;
Osman, Fikret;
Korvald, Hanne;
Tsaneva, Irina;
Whitby, Matthew C.;
Seeberg, Erling;
Bjørås, Magnar

Publication type:

Article

The SAF-box domain of chromatin protein DEK.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 3, p. 1101

By:

Böhm, Friederike;
Kappes, Ferdinand;
Scholten, Ingo;
Richter, Nicole;
Matsuo, Hiroshi;
Knippers, Rolf;
Waldmann, Tanja

Publication type:

Article

Detection of 5′- and 3′-UTR-derived small RNAs and cis-encoded antisense RNAs in Escherichia coli.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 3, p. 1040, doi. 10.1093/nar/gki256

By:

Kawano, Mitsuoki;
Reynolds, April A.;
Miranda-Rios, Juan;
Storz, Gisela

Publication type:

Article

8-vinyl-deoxyadenosine, an alternative fluorescent nucleoside analog to 2′-deoxyribosyl-2-aminopurine with improved properties.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 3, p. 1031, doi. 10.1093/nar/gki253

By:

Gaied, Nouha Ben;
Glasser, Nicole;
Ramalanjaona, Nick;
Beltz, Hervé;
Wolff, Philippe;
Marquet, Roland;
Burger, Alain;
Mély, Yves

Publication type:

Article

Mutant p53 proteins bind DNA in a DNA structure-selective mode.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 3, p. 1087

By:

Göhler, Thomas;
Jäger, Stefan;
Warnecke, Gabriele;
Yasuda, Hideyo;
Kim, Ella;
Deppert, Wolfgang

Publication type:

Article

The mouse RNase 4 and RNase 5/ang 1 locus utilizes dual promoters for tissue-specific expression.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 3, p. 1077, doi. 10.1093/nar/gki250

By:

Dyer, Kimberly D.;
Rosenberg, Helene F.

Publication type:

Article

Plant promoter prediction with confidence estimation.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 3, p. 1069, doi. 10.1093/nar/gki247

By:

Shahmuradov, I. A.;
Solovyev, V. V.;
Gammerman, A. J.

Publication type:

Article

Mms22p protects Saccharomyces cerevisiae from DNA damage induced by topoisomerase II.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 3, p. 1021, doi. 10.1093/nar/gki246

By:

Baldwin, E. L.;
Berger, A. C.;
Corbett, A. H.;
Osheroff, N.

Publication type:

Article

The relationship between the prothrombin upstream sequence element and the G20210A polymorphism: the influence of a competitive environment for mRNA 3′-end formation.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 3, p. 1010, doi. 10.1093/nar/gki245

By:

Sachchithananthan, Mythily;
Stasinopoulos, Stan J.;
Wilusz, Jeffrey;
Medcalf, Robert L.

Publication type:

Article

Characterization of the ATPase and unwinding activities of the yeast DEAD-box protein Has1p and the analysis of the roles of the conserved motifs.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 3, p. 999, doi. 10.1093/nar/gki244

By:

Rocak, Sanda;
Emery, Bertrand;
Tanner, N. Kyle;
Linder, Patrick

Publication type:

Article

Direct transcriptional repression of the genes encoding the zinc-finger proteins Gfi1b and Gfi1 by Gfi1b.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 3, p. 987, doi. 10.1093/nar/gki243

By:

Vassen, Lothar;
Fiolka, Katharina;
Mahlmann, Stefan;
Möröy, Tarik

Publication type:

Article

HIV-1 integrase crosslinked oligomers are active in vitro.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 3, p. 977, doi. 10.1093/nar/gki241

By:

Faure, Aurélie;
Calmels, Christina;
Desjobert, Cécile;
Castroviejo, Michel;
Caumont-Sarcos, Anne;
Tarrago-Litvak, Laura;
Litvak, Simon;
Parissi, Vincent

Publication type:

Article

mRNA sequence features that contribute to translational regulation in Arabidopsis.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 3, p. 955, doi. 10.1093/nar/gki240

By:

Kawaguchi, Riki;
Bailey-Serres, Julia

Publication type:

Article

Molecular recognition of DNA base pairs by the formamido/pyrrole and formamido/imidazole pairings in stacked polyamides.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 3, p. 912, doi. 10.1093/nar/gki238

By:

Buchmueller, Karen L.;
Staples, Andrew M.;
Uthe, Peter B.;
Howard, Cameron M.;
Pacheco, Kimberly A. O.;
Cox, Kari K.;
Henry, James A.;
Bailey, Suzanna L.;
Horick, Sarah M.;
Nguyen, Binh;
Wilson, W. David;
Lee, Moses

Publication type:

Article

Investigation of Mg2+- and temperature-dependent folding of the hairpin ribozyme by photo-crosslinking: effects of photo-crosslinker tether length and chemistry.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 3, p. 1058, doi. 10.1093/nar/gki237

By:

Borda, Emily J.;
Sigurdsson, Snorri Th.

Publication type:

Article

Protein coding potential of retroviruses and other transposable elements in vertebrate genomes.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 3, p. 946, doi. 10.1093/nar/gki236

By:

Zdobnov, Evgeny M.;
Campillos, Mónica;
Harrington, Eoghan D.;
Torrents, David;
Bork, Peer

Publication type:

Article

Design of nucleic acid sequences for DNA computing based on a thermodynamic approach.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 3, p. 903, doi. 10.1093/nar/gki235

By:

Tanaka, Fumiaki;
Kameda, Atsushi;
Yamamoto, Masahito;
Ohuchi, Azuma

Publication type:

Article

The p80 homology region of TEP1 is sufficient for its association with the telomerase and vault RNAs, and the vault particle.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 3, p. 893, doi. 10.1093/nar/gki234

By:

Poderycki, Michael J.;
Rome, Leonard H.;
Harrington, Lea;
Kickhoefer, Valerie A.

Publication type:

Article

Homology-extended sequence alignment.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 3, p. 816, doi. 10.1093/nar/gki233

By:

Simossis, V. A.;
Kleinjung, J.;
Heringa, J.

Publication type:

Article

A novel method for accurate operon predictions in all sequenced prokaryotes.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 3, p. 880, doi. 10.1093/nar/gki232

By:

Price, Morgan N.;
Huang, Katherine H.;
Alm, Eric J.;
Arkin, Adam P.

Publication type:

Article

Sam68 is absolutely required for Rev function and HIV-1 production.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 3, p. 873, doi. 10.1093/nar/gki231

By:

Modem, Suhasini;
Badri, Kameswara R.;
Holland, Thomas C.;
Reddy, Thipparthi R.

Publication type:

Article

Linking disease-associated genes to regulatory networks via promoter organization.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 3, p. 864

By:

Döhr, S.;
Klingenhoff, A.;
Maier, H.;
de Angelis, M. Hrabé;
Werner, T.;
Schneider, R.

Publication type:

Article

Site-specific Tn7 transposition into the human genome.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 3, p. 857, doi. 10.1093/nar/gki227

By:

Kuduvalli, Prasad N.;
Mitra, Rupak;
Craig, Nancy L.

Publication type:

Article

Long-range oscillation in a periodic DNA sequence motif may influence nucleosome array formation.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 3, p. 934, doi. 10.1093/nar/gki224

By:

Dalal, Yamini;
Fleury, Tomara J.;
Cioffi, Alfred;
Stein, Arnold

Publication type:

Article

A potential role for RNA interference in controlling the activity of the human LINE-1 retrotransposon.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 3, p. 846, doi. 10.1093/nar/gki223

By:

Soifer, Harris S.;
Zaragoza, Adriana;
Peyvan, Maany;
Behlke, Mark A.;
Rossi, John J.

Publication type:

Article

Distinct transcriptional responses of RNA polymerases I, II and III to aptamers that bind TBP.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 3, p. 838, doi. 10.1093/nar/gki212

By:

Fan, Xiaochun;
Shi, Hua;
Lis, John T.

Publication type:

Article

Toxin–antitoxin loci are highly abundant in free-living but lost from host-associated prokaryotes.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 3, p. 966, doi. 10.1093/nar/gki201

By:

Pandey, Deo Prakash;
Gerdes, Kenn

Publication type:

Article

Catalytic mechanism of Escherichia coli ribonuclease III: kinetic and inhibitor evidence for the involvement of two magnesium ions in RNA phosphodiester hydrolysis.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 3, p. 807, doi. 10.1093/nar/gki197

By:

Sun, Weimei;
Pertzev, Alexandre;
Nicholson, Allen W.

Publication type:

Article

A new computational method for the detection of horizontal gene transfer events.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 3, p. 922, doi. 10.1093/nar/gki187

By:

Tsirigos, Aristotelis;
Rigoutsos, Isidore

Publication type:

Article

Splicing of human immunodeficiency virus RNA is position-dependent suggesting sequential removal of introns from the 5′ end.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 3, p. 825, doi. 10.1093/nar/gki185

By:

Bohne, Jens;
Wodrich, Harald;
Kräusslich, Hans-Georg

Publication type:

Article