Works matching IS 03051048 AND DT 2005 AND VI 33 AND IP 2

Results: 49

An oligonucleotide microarray for microRNA expression analysis based on labeling RNA with quantum dot and nanogold probe.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 2, p. e17, doi. 10.1093/nar/gni019

By:

Liang, Ru-Qiang;
Li, Wei;
Li, Yang;
Tan, Cui-yan;
Li, Jian-Xun;
Jin, You-Xin;
Ruan, Kang-Cheng

Publication type:

Article

Tetracycline-inducible gene regulation in mycobacteria.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 2, p. e22, doi. 10.1093/nar/gni023

By:

Blokpoel, Marian C. J.;
Murphy, Helen N.;
O'Toole, Ronan;
Wiles, Siouxsie;
Runn, Ellen S. C.;
Stewart, Graham R.;
Young, Douglas B.;
Robertson, Brian D.

Publication type:

Article

Suppression of nonsense-mediated mRNA decay permits unbiased gene trapping in mouse embryonic stem cells.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 2, p. e20, doi. 10.1093/nar/gni022

By:

Shigeoka, Toshiaki;
Kawaichi, Masashi;
Ishida, Yasumasa

Publication type:

Article

Exonuclease III protection assay with FRET probe for detecting DNA-binding proteins.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 2, p. e23, doi. 10.1093/nar/gni021

By:

Wang, Jinke;
Li, Tongxiang;
Guo, Xiaoying;
Lu, Zuhong

Publication type:

Article

Diagnosis of HNF-1α mutations on a PNA zip-code microarray by single base extension.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 2, p. e19, doi. 10.1093/nar/gni020

By:

Song, Jae Yang;
Park, Hyun Gyu;
Jung, Sung-Ouk;
Park, JaeChan

Publication type:

Article

Whole-genome experimental identification of insertion/deletion polymorphisms of interspersed repeats by a new general approach.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 2, p. e16, doi. 10.1093/nar/gni018

By:

Mamedov, Ilgar Z.;
Arzumanyan, Elena S.;
Amosova, Anna L.;
Lebedev, Yuri B.;
Sverdlov, Eugene D.

Publication type:

Article

SNP identification in unamplified human genomic DNA with gold nanoparticle probes.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 2, p. e15, doi. 10.1093/nar/gni017

By:

Bao, Y. Paul;
Huber, Martin;
Wei, Tai-Fen;
Marla, Sudhakar S.;
Storhoff, James J.;
Muller, Uwe R.

Publication type:

Article

Gene trap and gene inversion methods for conditional gene inactivation in the mouse.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 2, p. e14, doi. 10.1093/nar/gni016

By:

Xin, Hong-Bo;
Deng, Ke-Yu;
Shui, Bo;
Qu, Shimian;
Sun, Qi;
Lee, Jane;
Greene, Kai Su;
Wilson, Jason;
Yu, Ying;
Feldman, Morris;
Kotlikoff, Michael I.

Publication type:

Article

A molecular beacon, bead-based assay for the detection of nucleic acids by flow cytometry.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 2, p. e13, doi. 10.1093/nar/gni015

By:

Horejsh, Douglas;
Martini, Federico;
Poccia, Fabrizio;
Ippolito, Giuseppe;
Di Caro, Antonino;
Capobianchi, Maria R.

Publication type:

Article

Controlling gene expression in mycobacteria with anhydrotetracycline and Tet repressor.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 2, p. e21, doi. 10.1093/nar/gni013

By:

Ehrt, Sabine;
Guo, Xinzheng V.;
Hickey, Christopher M.;
Ryou, Marvin;
Monteleone, Mercedes;
Riley, Lee W.;
Schnappinger, Dirk

Publication type:

Article

Novel mobilizable prokaryotic two-hybrid system vectors for high-throughput protein interaction mapping in Escherichia coli by bacterial conjugation.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 2, p. e18, doi. 10.1093/nar/gni011

By:

Clarke, Paul;
Cuiv, Pßraic Ô;
O'Connell, Michael

Publication type:

Article

A simple method for predicting the functional differentiation of duplicate genes and its application to MIKC-type MADS-box genes.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 2, p. e12, doi. 10.1093/nar/gni003

By:

Nam, Jongmin;
Kaufmann, Kerstin;
Theiben, Gunter;
Nei, Masatoshi

Publication type:

Article

NMR structures of double loops of an RNA aptamer against mammalian initiation factor 4A.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 2, p. 745, doi. 10.1093/nar/gki222

By:

Sakamoto, Taiichi;
Oguro, Akihiro;
Kawai, Gota;
Ohtsu, Takashi;
Nakamura, Yoshikazu

Publication type:

Article

The histone deacetylase inhibitor trichostatin A alters the pattern of DNA replication origin activity in human cells.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 2, p. 805, doi. 10.1093/nar/gki229

By:

Kemp, Michael G.;
Ghosh, Maloy;
Liu, Guoqi;
Leffak, Michael

Publication type:

Article

Fibroin-modulator-binding protein-1 (FMBP-1) contains a novel DNA-binding domain, repeats of the score and three amino acid peptide (STP), conserved from Caenorhabditis elegans to humans.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 2, p. 786, doi. 10.1093/nar/gki228

By:

Takiya, Shigeharu;
Ishikawa, Tetsurou;
Ohtsuka, Katsuya;
Nishita, Yoshinori;
Suzuki, Yoshiaki

Publication type:

Article

Licensing for DNA replication requires a strict sequential assembly of Cdc6 and Cdt1 onto chromatin in Xenopus egg extracts.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 2, p. 765, doi. 10.1093/nar/gki226

By:

Tsuyama, Takashi;
Tada, Shusuke;
Watanabe, Saori;
Seki, Masayuki;
Enomoto, Takemi

Publication type:

Article

RNA polymerase mutants defective in the initiation of transcription-coupled DNA repair.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 2, p. 755, doi. 10.1093/nar/gki225

By:

Smith, A. J.;
Savery, N. J.

Publication type:

Article

DNA analysis with multiplex microarray-enhanced PCR.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 2, p. e11, doi. 10.1093/nar/gnh184

By:

Pemov, A.;
Modi, H.;
Chandler, D. P.;
Bavykin, S.

Publication type:

Article

In vivo RNA localization of I factor, a non-LTR retrotransposon, requires a cis-acting signal in ORF2 and ORF1 protein.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 2, p. 776, doi. 10.1093/nar/gki221

By:

Seleme, Maria del Carmen;
Disson, Olivier;
Robin, Stephanie;
Brun, Christine;
Teninges, Danielle;
Bucheton, Alain

Publication type:

Article

HIV-1 can escape from RNA interference by evolving an alternative structure in its RNA genome.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 2, p. 796, doi. 10.1093/nar/gki220

By:

Westerhout, Ellen M.;
Ooms, Marcel;
Vink, Monique;
Das, Atze T.;
Berkhout, Ben

Publication type:

Article

Limited TTP supply affects telomere length regulation in a telomerase-independent fashion.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 2, p. 704, doi. 10.1093/nar/gki219

By:

Toussaint, Martin;
Dionne, Isabelle;
Wellinger, Raymund J.

Publication type:

Article

Structural characterization of the highly conserved 98-base sequence at the 3′ end of HCV RNA genome and the complementary sequence located at the 5′ end of the replicative viral strand.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 2, p. 693, doi. 10.1093/nar/gki218

By:

Dutkiewicz, Mariola;
Ciesiołka, Jerzy

Publication type:

Article

A hepatitis C virus (HCV) internal ribosome entry site (IRES) domain III–IV-targeted aptamer inhibits translation by binding to an apical loop of domain IIId.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 2, p. 683, doi. 10.1093/nar/gki215

By:

Kikuchi, Kunio;
Umehara, Takuya;
Fukuda, Kotaro;
Kuno, Atsushi;
Hasegawa, Tsunemi;
Nishikawa, Satoshi

Publication type:

Article

A functional analysis of the DNA glycosylase activity of mouse MUTYH protein excising 2-hydroxyadenine opposite guanine in DNA.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 2, p. 672, doi. 10.1093/nar/gki214

By:

Ushijima, Yasuhiro;
Tominaga, Yohei;
Miura, Tomofumi;
Tsuchimoto, Daisuke;
Sakumi, Kunihiko;
Nakabeppu, Yusaku

Publication type:

Article

Inference of relationships in the ‘twilight zone’ of homology using a combination of bioinformatics and site-directed mutagenesis: a case study of restriction endonucleases Bsp6I and PvuII.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 2, p. 661, doi. 10.1093/nar/gki213

By:

Pawlak, Sebastian D.;
Radlinska, Monika;
Chmiel, Agnieszka A.;
Bujnicki, Janusz M.;
Skowronek, Krzysztof J.

Publication type:

Article

A highly specific phosphatase that acts on ADP-ribose 1″-phosphate, a metabolite of tRNA splicing in Saccharomyces cerevisiae.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 2, p. 650, doi. 10.1093/nar/gki211

By:

Shull, Neil P.;
Spinelli, Sherry L.;
Phizicky, Eric M.

Publication type:

Article

The splicing regulatory element, UGCAUG, is phylogenetically and spatially conserved in introns that flank tissue-specific alternative exons.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 2, p. 714, doi. 10.1093/nar/gki210

By:

Minovitsky, Simon;
Gee, Sherry L.;
Schokrpur, Shiruyeh;
Dubchak, Inna;
Conboy, John G.

Publication type:

Article

Functional characterization of two human MutY homolog (hMYH) missense mutations (R227W and V232F) that lie within the putative hMSH6 binding domain and are associated with hMYH polyposis.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 2, p. 597, doi. 10.1093/nar/gki209

By:

Bai, Haibo;
Jones, Sian;
Guan, Xin;
Wilson, Teresa M.;
Sampson, Julian R.;
Cheadle, Jeremy P.;
Lu, A-Lien

Publication type:

Article

Choosing between DNA and RNA: the polymer specificity of RNA helicase NPH-II.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 2, p. 644, doi. 10.1093/nar/gki208

By:

Kawaoka, Jane;
Pyle, Anna Marie

Publication type:

Article

Rapid creation of BAC-based human artificial chromosome vectors by transposition with synthetic alpha-satellite arrays.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 2, p. 587, doi. 10.1093/nar/gki207

By:

Basu, Joydeep;
Stromberg, Gregory;
Compitello, George;
Willard, Huntington F.;
Bokkelen, Gil Van

Publication type:

Article

The genome sequence of Xanthomonas oryzae pathovar oryzae KACC10331, the bacterial blight pathogen of rice.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 2, p. 577, doi. 10.1093/nar/gki206

By:

Lee, Byoung-Moo;
Park, Young-Jin;
Park, Dong-Suk;
Kang, Hee-Wan;
Kim, Jeong-Gu;
Song, Eun-Sung;
Park, In-Cheol;
Yoon, Ung-Han;
Hahn, Jang-Ho;
Koo, Bon-Sung;
Lee, Gil-Bok;
Kim, Hyungtae;
Park, Hyun-Seok;
Yoon, Kyong-Oh;
Kim, Jeong-Hyun;
Jung, Chol-hee;
Koh, Nae-Hyung;
Seo, Jeong-Sun;
Go, Seung-Joo

Publication type:

Article

A graphical simulation model of the entire DNA process associated with the analysis of short tandem repeat loci.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 2, p. 632, doi. 10.1093/nar/gki205

By:

Gill, Peter;
Curran, James;
Elliot, Keith

Publication type:

Article

Quantitative evaluation of protein–DNA interactions using an optimized knowledge-based potential.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 2, p. 546, doi. 10.1093/nar/gki204

By:

Liu, Zhijie;
Mao, Fenglou;
Guo, Jun-tao;
Yan, Bo;
Wang, Peng;
Qu, Youxing;
Xu, Ying

Publication type:

Article

hnRNP A2, a potential ssDNA/RNA molecular adapter at the telomere.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 2, p. 486, doi. 10.1093/nar/gki203

By:

Moran-Jones, Kim;
Wayman, Lyndal;
Kennedy, Derek D.;
Reddel, Roger R.;
Sara, Sergio;
Snee, Mark J.;
Smith, Ross

Publication type:

Article

Functional interaction of reverse gyrase with single-strand binding protein of the archaeon Sulfolobus.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 2, p. 564, doi. 10.1093/nar/gki202

By:

Napoli, Alessandra;
Valenti, Anna;
Salerno, Vincenzo;
Nadal, Marc;
Garnier, Florence;
Rossi, Mose;
Ciaramella, Maria

Publication type:

Article

Comparative mitochondrial genomics in zygomycetes: bacteria-like RNase P RNAs, mobile elements and a close source of the group I intron invasion in angiosperms.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 2, p. 734, doi. 10.1093/nar/gki199

By:

Seif, Elias;
Leigh, Jessica;
Liu, Yu;
Roewer, Ingeborg;
Forget, Lise;
Lang, B. Franz

Publication type:

Article

MAFFT version 5: improvement in accuracy of multiple sequence alignment.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 2, p. 511, doi. 10.1093/nar/gki198

By:

Katoh, Kazutaka;
Kuma, Kei-ichi;
Toh, Hiroyuki;
Miyata, Takashi

Publication type:

Article

The herpes simplex virus type 1 DNA polymerase processivity factor, UL42, does not alter the catalytic activity of the UL9 origin-binding protein but facilitates its loading onto DNA.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 2, p. 536, doi. 10.1093/nar/gki196

By:

Trego, Kelly S.;
Zhu, Yali;
Parris, Deborah S.

Publication type:

Article

Molecular dynamics simulations and free energy calculations of netropsin and distamycin binding to an AAAAA DNA binding site.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 2, p. 725, doi. 10.1093/nar/gki195

By:

Dolenc, Jožica;
Oostenbrink, Chris;
Koller, Jože;
van Gunsteren, Wilfred F.

Publication type:

Article

Ribosomal protein L1 recognizes the same specific structural motif in its target sites on the autoregulatory mRNA and 23S rRNA.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 2, p. 478, doi. 10.1093/nar/gki194

By:

Nevskaya, Natalia;
Tishchenko, Svetlana;
Gabdoulkhakov, Azat;
Nikonova, Ekaterina;
Nikonov, Oleg;
Nikulin, Alexei;
Platonova, Olga;
Garber, Maria;
Nikonov, Stanislav;
Piendl, Wolfgang

Publication type:

Article

Preferential binding and structural distortion by Fe2+ at RGGG-containing DNA sequences correlates with enhanced oxidative cleavage at such sequences.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 2, p. 497, doi. 10.1093/nar/gki192

By:

Rai, Priyamvada;
Wemmer, David E.;
Linn, Stuart

Publication type:

Article

Facile FMR1 mRNA structure regulation by interruptions in CGG repeats.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 2, p. 451, doi. 10.1093/nar/gki186

By:

Napierala, Marek;
Michalowski, Daniel;
de Mezer, Mateusz;
Krzyzosiak, Wlodzimierz J.

Publication type:

Article

Noncoding DNA, isochores and gene expression: nucleosome formation potential.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 2, p. 559, doi. 10.1093/nar/gki184

By:

Vinogradov, Alexander E.

Publication type:

Article

Engineered allosteric ribozymes that respond to specific divalent metal ions.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 2, p. 622, doi. 10.1093/nar/gki182

By:

Zivarts, Maris;
Liu, Yong;
Breaker, Ronald R.

Publication type:

Article

Measuring genome conservation across taxa: divided strains and united kingdoms.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 2, p. 616, doi. 10.1093/nar/gki181

By:

Kunin, Victor;
Ahren, Dag;
Goldovsky, Leon;
Janssen, Paul;
Ouzounis, Christos A.

Publication type:

Article

In vitro synthesis of uniform poly(dG)–poly(dC) by Klenow exo− fragment of polymerase I.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 2, p. 525, doi. 10.1093/nar/gki178

By:

Kotlyar, Alexander B.;
Borovok, Natalia;
Molotsky, Tatiana;
Fadeev, Ludmila;
Gozin, Michael

Publication type:

Article

Conserved and specific functions of mammalian ssu72.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 2, p. 464, doi. 10.1093/nar/gki171

By:

St-Pierre, Benoit;
Liu, Xudong;
Kha, Lan-Chau T.;
Zhu, Xudong;
Ryan, Owen;
Jiang, Zhe;
Zacksenhaus, Eldad

Publication type:

Article

Extraction of transcription regulatory signals from genome-wide DNA–protein interaction data.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 2, p. 605, doi. 10.1093/nar/gki166

By:

Garten, Yael;
Kaplan, Shai;
Pilpel, Yitzhak

Publication type:

Article

A statistical analysis of RNA folding algorithms through thermodynamic parameter perturbation.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 2, p. 519, doi. 10.1093/nar/gkh983

By:

Layton, D. M.;
Bundschuh, R.

Publication type:

Article