Works matching IS 03051048 AND DT 2004 AND VI 32 AND IP 17

Results: 43

Protein evolution by codon-based random deletions.

Published in:

Nucleic Acids Research, 2004, v. 32, n. 17, p. e136, doi. 10.1093/nar/gnh135

By:

Osuna, Joel;
Yáñez, Jorge;
Soberón, Xavier;
Gaytán, Paul

Publication type:

Article

Molecular barcodes detect redundancy and contamination in hairpin-bisulfite PCR.

Published in:

Nucleic Acids Research, 2004, v. 32, n. 17, p. e135, doi. 10.1093/nar/gnh132

By:

Miner, Brooks E.;
Stöger, Reinhard J.;
Burden, Alice F.;
Laird, Charles D.;
Hansen, R. Scott

Publication type:

Article

Gene silencing in alveolar type II cells using cell-specific promoter in vitro and in vivo.

Published in:

Nucleic Acids Research, 2004, v. 32, n. 17, p. e134, doi. 10.1093/nar/gnh129

By:

Gou, Deming;
Narasaraju, Telugu;
Chintagari, Narendranath Reddy;
Jin, Nili;
Wang, Pengcheng;
Liu, Lin

Publication type:

Article

Osprey: a comprehensive tool employing novel methods for the design of oligonucleotides for DNA sequencing and microarrays.

Published in:

Nucleic Acids Research, 2004, v. 32, n. 17, p. e133, doi. 10.1093/nar/gnh127

By:

Gordon, Paul M. K.;
Sensen, Christoph W.

Publication type:

Article

Bipartite pattern discovery by entropy minimization-based multiple local alignment.

Published in:

Nucleic Acids Research, 2004, v. 32, n. 17, p. 5320

By:

Bi, Chengpeng;
Rogan, Peter K.

Publication type:

Article

The DNA primase of Sulfolobus solfataricus is activated by substrates containing a thymine-rich bubble and has a 3′-terminal nucleotidyl-transferase activity.

Published in:

Nucleic Acids Research, 2004, v. 32, n. 17, p. 5223, doi. 10.1093/nar/gkh865

By:

De Falco, Mariarosaria;
Fusco, Alessandra;
De Felice, Mariarita;
Rossi, Mosè;
Pisani, Francesca M.

Publication type:

Article

PhyloGenie: automated phylome generation and analysis.

Published in:

Nucleic Acids Research, 2004, v. 32, n. 17, p. 5231, doi. 10.1093/nar/gkh867

By:

Frickey, Tancred;
Lupas, Andrei N.

Publication type:

Article

Negative cross-talk between the human orphan nuclear receptor Nur77/NAK-1/TR3 and nuclear factor-κB.

Published in:

Nucleic Acids Research, 2004, v. 32, n. 17, p. 5280, doi. 10.1093/nar/gkh856

By:

Harant, Hanna;
Lindley, Ivan J. D.

Publication type:

Article

DNA-binding domain of GCN4 induces bending of both the ATF/CREB and AP-1 binding sites of DNA.

Published in:

Nucleic Acids Research, 2004, v. 32, n. 17, p. 5192, doi. 10.1093/nar/gkh854

By:

Dragan, Anatoly I.;
Liu, Yingyun;
Makeyeva, Elena N.;
Privalov, Peter L.

Publication type:

Article

AtmtPNPase is required for multiple aspects of the 18S rRNA metabolism in Arabidopsis thaliana mitochondria.

Published in:

Nucleic Acids Research, 2004, v. 32, n. 17, p. 5174, doi. 10.1093/nar/gkh852

By:

Perrin, Romary;
Lange, Heike;
Grienenberger, Jean-Michel;
Gagliardi, Dominique

Publication type:

Article

Automated synthesis of new ferrocenyl-modified oligonucleotides: study of their properties in solution.

Published in:

Nucleic Acids Research, 2004, v. 32, n. 17, p. 5310, doi. 10.1093/nar/gkh874

By:

Navarro, Aude-Emmanuelle;
Spinelli, Nicolas;
Moustrou, Corinne;
Chaix, Carole;
Mandrand, Bernard;
Brisset, Hugues

Publication type:

Article

The Saccharomyces cerevisiae TRT2 tRNAThr gene upstream of STE6 is a barrier to repression in MATα cells and exerts a potential tRNA position effect in MATa cells.

Published in:

Nucleic Acids Research, 2004, v. 32, n. 17, p. 5206, doi. 10.1093/nar/gkh858

By:

Simms, Tiffany A.;
Miller, Elsy C.;
Buisson, Nicolas P.;
Jambunathan, Nithya;
Donze, David

Publication type:

Article

A codon window in mRNA downstream of the initiation codon where NGG codons give strongly reduced gene expression in Escherichia coli.

Published in:

Nucleic Acids Research, 2004, v. 32, n. 17, p. 5198, doi. 10.1093/nar/gkh857

By:

Gonzalez de Valdivia, Ernesto I.;
Isaksson, Leif A.

Publication type:

Article

Biochemical properties of Trypanosoma cruzi telomerase.

Published in:

Nucleic Acids Research, 2004, v. 32, n. 17, p. 5214, doi. 10.1093/nar/gkh864

By:

Muñoz, Denise P.;
Collins, Kathleen

Publication type:

Article

A novel GTPase activated by the small subunit of ribosome.

Published in:

Nucleic Acids Research, 2004, v. 32, n. 17, p. 5303, doi. 10.1093/nar/gkh861

By:

Himeno, Hyouta;
Hanawa-Suetsugu, Kyoko;
Kimura, Takatsugu;
Takagi, Kuniaki;
Sugiyama, Wakana;
Shirata, Shinobu;
Mikami, Tomoyuki;
Odagiri, Fujiko;
Osanai, Yukiko;
Watanabe, Daisuke;
Goto, Simon;
Kalachnyuk, Liliya;
Ushida, Chisato;
Muto, Akira

Publication type:

Article

Mutational analysis of the damage-recognition and catalytic mechanism of human SMUG1 DNA glycosylase.

Published in:

Nucleic Acids Research, 2004, v. 32, n. 17, p. 5291, doi. 10.1093/nar/gkh859

By:

Matsubara, Mayumi;
Tanaka, Tamon;
Terato, Hiroaki;
Ohmae, Eiji;
Izumi, Shunsuke;
Katayanagi, Katsuo;
Ide, Hiroshi

Publication type:

Article

A general role of the DNA glycosylase Nth1 in the abasic sites cleavage step of base excision repair in Schizosaccharomyces pombe.

Published in:

Nucleic Acids Research, 2004, v. 32, n. 17, p. 5119, doi. 10.1093/nar/gkh851

By:

Alseth, Ingrun;
Korvald, Hanne;
Osman, Fekret;
Seeberg, Erling;
Bjørås, Magnar

Publication type:

Article

Adjust quality scores from alignment and improve sequencing accuracy.

Published in:

Nucleic Acids Research, 2004, v. 32, n. 17, p. 5183

By:

Li, Ming;
Nordborg, Magnus;
Li, Lei M.

Publication type:

Article

Method for direct discrimination of intra- and intermolecular hydrogen bonds, and characterization of the G(:A):G(:A):G(:A):G heptad, with scalar couplings across hydrogen bonds.

Published in:

Nucleic Acids Research, 2004, v. 32, n. 17, p. 5113, doi. 10.1093/nar/gkh849

By:

Sotoya, Hidetsugu;
Matsugami, Akimasa;
Ikeda, Tetsuro;
Ouhashi, Kiyoshi;
Uesugi, Seiichi;
Katahira, Masato

Publication type:

Article

DNA polymerase β overexpression stimulates the Rad51-dependent homologous recombination in mammalian cells.

Published in:

Nucleic Acids Research, 2004, v. 32, n. 17, p. 5104, doi. 10.1093/nar/gkh848

By:

Canitrot, Yvan;
Capp, Jean-Pascal;
Puget, Nadine;
Bieth, Anne;
Lopez, Bernard;
Hoffmann, Jean-Sébastien;
Cazaux, Christophe

Publication type:

Article

Position- and orientation-specific enhancement of topoisomerase I cleavage complexes by triplex DNA structures.

Published in:

Nucleic Acids Research, 2004, v. 32, n. 17, p. 5163, doi. 10.1093/nar/gkh847

By:

Antony, Smitha;
Arimondo, Paola B.;
Sun, Jian-Sheng;
Pommier, Yves

Publication type:

Article

Thermodynamic, kinetic and structural basis for recognition and repair of abasic sites in DNA by apurinic/apyrimidinic endonuclease from human placenta.

Published in:

Nucleic Acids Research, 2004, v. 32, n. 17, p. 5134, doi. 10.1093/nar/gkh846

By:

Beloglazova, Natalia G.;
Kirpota, Oleg O.;
Starostin, Konstantin V.;
Ishchenko, Alexander A.;
Yamkovoy, Vitaly I.;
Zharkov, Dmitry O.;
Douglas, Kenneth T.;
Nevinsky, Georgy A.

Publication type:

Article

Genome-wide analysis of alternative pre-mRNA splicing in Arabidopsis thaliana based on full-length cDNA sequences.

Published in:

Nucleic Acids Research, 2004, v. 32, n. 17, p. 5096, doi. 10.1093/nar/gkh845

By:

Iida, Kei;
Seki, Motoaki;
Sakurai, Tetsuya;
Satou, Masakazu;
Akiyama, Kenji;
Toyoda, Tetsuro;
Konagaya, Akihiko;
Shinozaki, Kazuo

Publication type:

Article

DNA adopts normal B-form upon incorporation of highly fluorescent DNA base analogue tC: NMR structure and UV-Vis spectroscopy characterization.

Published in:

Nucleic Acids Research, 2004, v. 32, n. 17, p. 5087, doi. 10.1093/nar/gkh844

By:

Engman, K. Cecilia;
Sandin, Peter;
Osborne, Sadie;
Brown, Tom;
Billeter, Martin;
Lincoln, Per;
Nordén, Bengt;
Albinsson, Bo;
Wilhelmsson, L. Marcus

Publication type:

Article

A yeast arginine specific tRNA is a remnant aspartate acceptor.

Published in:

Nucleic Acids Research, 2004, v. 32, n. 17, p. 5076, doi. 10.1093/nar/gkh843

By:

Fender, Aurélie;
Geslain, Renaud;
Eriani, Gilbert;
Giegé, Richard;
Sissler, Marie;
Florentz, Catherine

Publication type:

Article

DNA double strand break repair in human bladder cancer is error prone and involves microhomology-associated end-joining.

Published in:

Nucleic Acids Research, 2004, v. 32, n. 17, p. 5249, doi. 10.1093/nar/gkh842

By:

Bentley, Johanne;
Diggle, Christine P.;
Harnden, Patricia;
Knowles, Margaret A.;
Kiltie, Anne E.

Publication type:

Article

Determination of thermodynamic parameters for HIV DIS type loop–loop kissing complexes.

Published in:

Nucleic Acids Research, 2004, v. 32, n. 17, p. 5126, doi. 10.1093/nar/gkh841

By:

Weixlbaumer, Albert;
Werner, Andreas;
Flamm, Christoph;
Westhof, Eric;
Schroeder, Renée

Publication type:

Article

Pdr3 is required for DNA damage induction of MAG1 and DDI1 via a bi-directional promoter element.

Published in:

Nucleic Acids Research, 2004, v. 32, n. 17, p. 5066, doi. 10.1093/nar/gkh838

By:

Zhu, Yu;
Xiao, Wei

Publication type:

Article

HYPROSP: a hybrid protein secondary structure prediction algorithm—a knowledge-based approach.

Published in:

Nucleic Acids Research, 2004, v. 32, n. 17, p. 5059

By:

Wu, Kuen-Pin;
Lin, Hsin-Nan;
Chang, Jia-Ming;
Sung, Ting-Yi;
Hsu, Wen-Lian

Publication type:

Article

Selection and evolution of NTP-specific aptamers.

Published in:

Nucleic Acids Research, 2004, v. 32, n. 17, p. 5045, doi. 10.1093/nar/gkh835

By:

Weill, Laure;
Louis, Dominique;
Sargueil, Bruno

Publication type:

Article

Solving the riddle of codon usage preferences: a test for translational selection.

Published in:

Nucleic Acids Research, 2004, v. 32, n. 17, p. 5036, doi. 10.1093/nar/gkh834

By:

Reis, Mario dos;
Savva, Renos;
Wernisch, Lorenz

Publication type:

Article

Comparative analysis of complete genomes reveals gene loss, acquisition and acceleration of evolutionary rates in Metazoa, suggests a prevalence of evolution via gene acquisition and indicates that the evolutionary rates in animals tend to be ...

Published in:

Nucleic Acids Research, 2004, v. 32, n. 17, p. 5029, doi. 10.1093/nar/gkh833

By:

Babenko, Vladimir N.;
Krylov, Dmitri M.

Publication type:

Article

The post-replication repair RAD18 and RAD6 genes are involved in the prevention of spontaneous mutations caused by 7,8-dihydro-8-oxoguanine in Saccharomyces cerevisiae.

Published in:

Nucleic Acids Research, 2004, v. 32, n. 17, p. 5003, doi. 10.1093/nar/gkh831

By:

de Padula, Marcelo;
Slezak, Guenaelle;
Auffret van Der Kemp, Patricia;
Boiteux, Serge

Publication type:

Article

Comparative genomics of the FtsK–HerA superfamily of pumping ATPases: implications for the origins of chromosome segregation, cell division and viral capsid packaging.

Published in:

Nucleic Acids Research, 2004, v. 32, n. 17, p. 5260, doi. 10.1093/nar/gkh828

By:

Iyer, Lakshminarayan M.;
Makarova, Kira S.;
Koonin, Eugene V.;
Aravind, L.

Publication type:

Article

DNA-mediated assembly of weakly interacting DNA-binding protein subunits: in vitro recruitment of phage 434 repressor and yeast GCN4 DNA-binding domains.

Published in:

Nucleic Acids Research, 2004, v. 32, n. 17, p. 4992, doi. 10.1093/nar/gkh827

By:

Guarnaccia, Corrado;
Raman, Bakthisaran;
Zahariev, Sotir;
Simoncsits, András;
Pongor, Sándor

Publication type:

Article

Bipartite pattern discovery by entropy minimization-based multiple local alignment.

Published in:

Nucleic Acids Research, 2004, v. 32, n. 17, p. 4979

By:

Bi, Chengpeng;
Rogan, Peter K.

Publication type:

Article

Transcription-coupled and splicing-coupled strand asymmetries in eukaryotic genomes.

Published in:

Nucleic Acids Research, 2004, v. 32, n. 17, p. 4969, doi. 10.1093/nar/gkh823

By:

Touchon, Marie;
Arneodo, Alain;
d'Aubenton-Carafa, Yves;
Thermes, Claude

Publication type:

Article

Camptothecin enhances the frequency of oligonucleotide-directed gene repair in mammalian cells by inducing DNA damage and activating homologous recombination.

Published in:

Nucleic Acids Research, 2004, v. 32, n. 17, p. 5239, doi. 10.1093/nar/gkh822

By:

Ferrara, Luciana;
Kmiec, Eric B.

Publication type:

Article

Lsh, an epigenetic guardian of repetitive elements.

Published in:

Nucleic Acids Research, 2004, v. 32, n. 17, p. 5019, doi. 10.1093/nar/gkh821

By:

Huang, Jiaqiang;
Fan, Tao;
Yan, Qingsheng;
Zhu, Heming;
Fox, Stephen;
Issaq, Haleem J.;
Best, Lionel;
Gangi, Lisa;
Munroe, David;
Muegge, Kathrin

Publication type:

Article

DNA computing using single-molecule hybridization detection.

Published in:

Nucleic Acids Research, 2004, v. 32, n. 17, p. 4962, doi. 10.1093/nar/gkh817

By:

Schmidt, Kristiane A.;
Henkel, Christiaan V.;
Rozenberg, Grzegorz;
Spaink, Herman P.

Publication type:

Article

In silico identification of transcriptional regulators associated with c-Myc.

Published in:

Nucleic Acids Research, 2004, v. 32, n. 17, p. 4955, doi. 10.1093/nar/gkh816

By:

Elkon, Ran;
Zeller, Karen I.;
Linhart, Chaim;
Dang, Chi V.;
Shamir, Ron;
Shiloh, Yosef

Publication type:

Article

Amplification and assembly of chip-eluted DNA (AACED): a method for high-throughput gene synthesis.

Published in:

Nucleic Acids Research, 2004, v. 32, n. 17, p. 5011, doi. 10.1093/nar/gkh793

By:

Richmond, Kathryn E.;
Li, Mo-Huang;
Rodesch, Matthew J.;
Patel, Madhusudan;
Lowe, Aaron M.;
Kim, Changhan;
Chu, Larry L.;
Venkataramaian, Narasimhar;
Flickinger, Shane F.;
Kaysen, James;
Belshaw, Peter J.;
Sussman, Michael R.;
Cerrina, Franco

Publication type:

Article

A new hydrogen-bonding potential for the design of protein–RNA interactions predicts specific contacts and discriminates decoys.

Published in:

Nucleic Acids Research, 2004, v. 32, n. 17, p. 5147, doi. 10.1093/nar/gkh785

By:

Chen, Yu;
Kortemme, Tanja;
Robertson, Tim;
Baker, David;
Varani, Gabriele

Publication type:

Article