Works matching IS 03051048 AND DT 2004 AND VI 32 AND IP 13

Results: 39

Detection of protein–DNA interaction with a DNA probe: distinction between single-strand and double-strand DNA–protein interaction.

Published in:

Nucleic Acids Research, 2004, v. 32, n. 13, p. e110, doi. 10.1093/nar/gnh109

By:

Ban, Changill;
Chung, Suhman;
Park, Deog-Su;
Shim, Yoon-Bo

Publication type:

Article

Detecting single DNA copy number variations in complex genomes using one nanogram of starting DNA and BAC-array CGH.

Published in:

Nucleic Acids Research, 2004, v. 32, n. 13, p. e112, doi. 10.1093/nar/gnh108

By:

Guillaud-Bataille, Marine;
Valent, Alexander;
Soularue, Pascal;
Perot, Christine;
Inda, Maria-del-Mar;
Receveur, Aline;
Smaïli, Sadek;
Crollius, Hugues Roest;
Bénard, Jean;
Bernheim, Alain;
Gidrol, Xavier;
Danglot, Gisèle

Publication type:

Article

Transcriptionally competent chromatin assembled with exogenous histones in a yeast whole cell extract.

Published in:

Nucleic Acids Research, 2004, v. 32, n. 13, p. e111, doi. 10.1093/nar/gnh107

By:

Rodríguez-Campos, Antonio;
Koop, Ronald;
Faraudo, Susanna;
Beato, Miguel

Publication type:

Article

Protein–DNA footprinting by endcapped duplex oligodeoxyribonucleotides.

Published in:

Nucleic Acids Research, 2004, v. 32, n. 13, p. e107

By:

Ng, Pei-Sze;
Bergstrom, Donald E.

Publication type:

Article

New separation-free assay technique for SNPs using two-photon excitation fluorometry.

Published in:

Nucleic Acids Research, 2004, v. 32, n. 13, p. e108, doi. 10.1093/nar/gnh102

By:

Vaarno, Jonne;
Ylikoski, Emmi;
Meltola, Niko J.;
Soini, Juhani T.;
Hänninen, Pekka;
Lahesmaa, Riitta;
Soini, Aleksi E.

Publication type:

Article

Atelocollagen-mediated synthetic small interfering RNA delivery for effective gene silencing in vitro and in vivo.

Published in:

Nucleic Acids Research, 2004, v. 32, n. 13, p. e109, doi. 10.1093/nar/gnh093

By:

Minakuchi, Yoshiko;
Takeshita, Fumitaka;
Kosaka, Nobuyoshi;
Sasaki, Hideo;
Yamamoto, Yusuke;
Kouno, Makiko;
Honma, Kimi;
Nagahara, Shunji;
Hanai, Koji;
Sano, Akihiko;
Kato, Takashi;
Terada, Masaaki;
Ochiya, Takahiro

Publication type:

Article

Single amino acid changes in AspRS reveal alternative routes for expanding its tRNA repertoire in vivo.

Published in:

Nucleic Acids Research, 2004, v. 32, n. 13, p. 4081, doi. 10.1093/nar/gkh751

By:

Martin, Franck;
Barends, Sharief;
Eriani, Gilbert

Publication type:

Article

Cleavage of deoxyoxanosine-containing oligodeoxyribonucleotides by bacterial endonuclease V.

Published in:

Nucleic Acids Research, 2004, v. 32, n. 13, p. 4071, doi. 10.1093/nar/gkh747

By:

Hitchcock, Thomas M.;
Gao, Honghai;
Cao, Weiguo

Publication type:

Article

Gene trap as a tool for genome annotation and analysis of X chromosome inactivation in human embryonic stem cells.

Published in:

Nucleic Acids Research, 2004, v. 32, n. 13, p. 3995, doi. 10.1093/nar/gkh746

By:

Dhara, Sujoy K.;
Benvenisty, Nissim

Publication type:

Article

Enhanced nucleic acid binding to ATP-bound hepatitis C virus NS3 helicase at low pH activates RNA unwinding.

Published in:

Nucleic Acids Research, 2004, v. 32, n. 13, p. 4060, doi. 10.1093/nar/gkh743

By:

Lam, Angela M. I.;
Rypma, Ryan S.;
Frick, David N.

Publication type:

Article

Origin of the intrinsic rigidity of DNA.

Published in:

Nucleic Acids Research, 2004, v. 32, n. 13, p. 4055, doi. 10.1093/nar/gkh740

By:

Mills, Janine B.;
Hagerman, Paul J.

Publication type:

Article

Synthesis and processing of tRNA-related SINE transcripts in Arabidopsis thaliana.

Published in:

Nucleic Acids Research, 2004, v. 32, n. 13, p. 3957, doi. 10.1093/nar/gkh738

By:

Pélissier, Thierry;
Bousquet-Antonelli, Cécile;
Lavie, Laurence;
Deragon, Jean-Marc

Publication type:

Article

High salt solution structure of a left-handed RNA double helix.

Published in:

Nucleic Acids Research, 2004, v. 32, n. 13, p. 4044, doi. 10.1093/nar/gkh736

By:

Popenda, Mariusz;
Milecki, Jan;
Adamiak, Ryszard W.

Publication type:

Article

Evolution of divergent DNA recognition specificities in VDE homing endonucleases from two yeast species.

Published in:

Nucleic Acids Research, 2004, v. 32, n. 13, p. 3947, doi. 10.1093/nar/gkh734

By:

Posey, Karen L.;
Koufopanou, Vassiliki;
Burt, Austin;
Gimble, Frederick S.

Publication type:

Article

The Alternative Splicing Gallery (ASG): bridging the gap between genome and transcriptome.

Published in:

Nucleic Acids Research, 2004, v. 32, n. 13, p. 3977, doi. 10.1093/nar/gkh731

By:

Leipzig, Jeremy;
Pevzner, Pavel;
Heber, Steffen

Publication type:

Article

Integron integrase binds to bulged hairpin DNA.

Published in:

Nucleic Acids Research, 2004, v. 32, n. 13, p. 4033, doi. 10.1093/nar/gkh730

By:

Johansson, Carolina;
Kamali-Moghaddam, Masood;
Sundström, Lars

Publication type:

Article

Quantitative modeling of DNA–protein interactions: effects of amino acid substitutions on binding specificity of the Mnt repressor.

Published in:

Nucleic Acids Research, 2004, v. 32, n. 13, p. 4026, doi. 10.1093/nar/gkh729

By:

Man, Tsz-Kwong;
Yang, Joshua SungWoo;
Stormo, Gary D.

Publication type:

Article

AdoMet radical proteins—from structure to evolution—alignment of divergent protein sequences reveals strong secondary structure element conservation.

Published in:

Nucleic Acids Research, 2004, v. 32, n. 13, p. 4015, doi. 10.1093/nar/gkh728

By:

Nicolet, Yvain;
Drennan, Catherine L.

Publication type:

Article

The adenovirus priming protein pTP contributes to the kinetics of initiation of DNA replication.

Published in:

Nucleic Acids Research, 2004, v. 32, n. 13, p. 3913, doi. 10.1093/nar/gkh726

By:

Mysiak, Monika E.;
Holthuizen, P. Elly;
van der Vliet, Peter C.

Publication type:

Article

Identification of important chemical groups of the hut mRNA for HutP interactions that regulate the hut operon in Bacillus subtilis.

Published in:

Nucleic Acids Research, 2004, v. 32, n. 13, p. 3904, doi. 10.1093/nar/gkh725

By:

Kumarevel, T. S.;
Gopinath, S. C. B.;
Nishikawa, S.;
Mizuno, H.;
Kumar, P. K. R.

Publication type:

Article

Changing the recognition specificity of a DNA-methyltransferase by in vitro evolution.

Published in:

Nucleic Acids Research, 2004, v. 32, n. 13, p. 3898, doi. 10.1093/nar/gkh724

By:

Tímár, Edit;
Groma, Gergely;
Kiss, Antal;
Venetianer, Pál

Publication type:

Article

Heat capacity changes in RNA folding: application of perturbation theory to hammerhead ribozyme cold denaturation.

Published in:

Nucleic Acids Research, 2004, v. 32, n. 13, p. 3967, doi. 10.1093/nar/gkh723

By:

Mikulecky, Peter J.;
Feig, Andrew L.

Publication type:

Article

New invMED1 element cis-activates human multidrug-related MDR1 and MVP genes, involving the LRP130 protein.

Published in:

Nucleic Acids Research, 2004, v. 32, n. 13, p. 3864, doi. 10.1093/nar/gkh722

By:

Labialle, Stéphane;
Dayan, Guila;
Gayet, Landry;
Rigal, Dominique;
Gambrelle, Joël;
Baggetto, Loris G.

Publication type:

Article

Poly(ADP-ribose) polymerase 1 regulates both the exonuclease and helicase activities of the Werner syndrome protein.

Published in:

Nucleic Acids Research, 2004, v. 32, n. 13, p. 4003, doi. 10.1093/nar/gkh721

By:

von Kobbe, Cayetano;
Harrigan, Jeanine A.;
Schreiber, Valérie;
Stiegler, Patrick;
Piotrowski, Jason;
Dawut, Lale;
Bohr, Vilhelm A.

Publication type:

Article

GATA-1 and NF-Y cooperate to mediate erythroid-specific transcription of Gfi-1B gene.

Published in:

Nucleic Acids Research, 2004, v. 32, n. 13, p. 3935, doi. 10.1093/nar/gkh719

By:

Huang, Duen-Yi;
Kuo, Yuan-Yeh;
Lai, Jiann-Shiun;
Suzuki, Yutaka;
Sugano, Sumio;
Chang, Zee-Fen

Publication type:

Article

Mathematical algorithm for discovering states of expression from direct genetic comparison by microarrays.

Published in:

Nucleic Acids Research, 2004, v. 32, n. 13, p. 3807, doi. 10.1093/nar/gkh718

By:

Fathallah-Shaykh, Hassan M.;
He, Bin;
Zhao, Li-Juan;
Badruddin, Aamir

Publication type:

Article

SMC1 coordinates DNA double-strand break repair pathways.

Published in:

Nucleic Acids Research, 2004, v. 32, n. 13, p. 3921, doi. 10.1093/nar/gkh716

By:

Schär, Primo;
Fäsi, Margaret;
Jessberger, Rolf

Publication type:

Article

siRNA-mediated gene silencing: a global genome view.

Published in:

Nucleic Acids Research, 2004, v. 32, n. 13, p. 3836, doi. 10.1093/nar/gkh714

By:

Semizarov, Dimitri;
Kroeger, Paul;
Fesik, Stephen

Publication type:

Article

Discovery of sequence motifs related to coexpression of genes using evolutionary computation.

Published in:

Nucleic Acids Research, 2004, v. 32, n. 13, p. 3826, doi. 10.1093/nar/gkh713

By:

Fogel, Gary B.;
Weekes, Dana G.;
Varga, Gabor;
Dow, Ernst R.;
Harlow, Harry B.;
Onyia, Jude E.;
Su, Chen

Publication type:

Article

Symmetry elements in DNA structure important for recognition/methylation by DNA [amino]-methyltransferases.

Published in:

Nucleic Acids Research, 2004, v. 32, n. 13, p. 3930, doi. 10.1093/nar/gkh712

By:

Zinoviev, Victor V.;
Yakishchik, S. I.;
Evdokimov, Alexey A.;
Malygin, Ernst G.;
Hattman, Stanley

Publication type:

Article

TFIIB-facilitated recruitment of preinitiation complexes by a TAF-independent mechanism.

Published in:

Nucleic Acids Research, 2004, v. 32, n. 13, p. 3856, doi. 10.1093/nar/gkh711

By:

Hori, Roderick T.;
Xu, Shuping;
Hu, Xianyuan;
Pyo, Sung

Publication type:

Article

Role of DNA polymerase η in the bypass of abasic sites in yeast cells.

Published in:

Nucleic Acids Research, 2004, v. 32, n. 13, p. 3984, doi. 10.1093/nar/gkh710

By:

Zhao, Bo;
Xie, Zhongwen;
Shen, Huiyun;
Wang, Zhigang

Publication type:

Article

Intercellular communication between germ line and somatic line is utilized to control the transcription of ZAM, an endogenous retrovirus from Drosophila melanogaster.

Published in:

Nucleic Acids Research, 2004, v. 32, n. 13, p. 3799, doi. 10.1093/nar/gkh708

By:

Meignin, Carine;
Dastugue, Bernard;
Vaury, Chantal

Publication type:

Article

Intracellular inhibition of hepatitis C virus (HCV) internal ribosomal entry site (IRES)-dependent translation by peptide nucleic acids (PNAs) and locked nucleic acids (LNAs).

Published in:

Nucleic Acids Research, 2004, v. 32, n. 13, p. 3792, doi. 10.1093/nar/gkh706

By:

Nulf, Christopher J.;
Corey, David

Publication type:

Article

Synthesis and physical and physiological properties of 4′-thioRNA: application to post-modification of RNA aptamer toward NF-κB.

Published in:

Nucleic Acids Research, 2004, v. 32, n. 13, p. 3815, doi. 10.1093/nar/gkh705

By:

Hoshika, Shuichi;
Minakawa, Noriaki;
Matsuda, Akira

Publication type:

Article

Sequence-specific artificial ribonucleases. I. Bis-imidazole-containing oligonucleotide conjugates prepared using precursor-based strategy.

Published in:

Nucleic Acids Research, 2004, v. 32, n. 13, p. 3887, doi. 10.1093/nar/gkh702

By:

Beloglazova, Natalia G.;
Fabani, Martin M.;
Zenkova, Marina A.;
Bichenkova, Elena V.;
Polushin, Nikolai N.;
Sil'nikov, Vladimir V.;
Douglas, Kenneth T.;
Vlassov, Valentin V.

Publication type:

Article

Caught in the act: visualization of an intermediate in the DNA base-flipping pathway induced by HhaI methyltransferase.

Published in:

Nucleic Acids Research, 2004, v. 32, n. 13, p. 3877, doi. 10.1093/nar/gkh701

By:

Horton, John R.;
Ratner, Gary;
Banavali, Nilesh K.;
Huang, Niu;
Choi, Yongseok;
Maier, Martin A.;
Marquez, Victor E.;
MacKerell, Alexander D.;
Cheng, Xiaodong

Publication type:

Article

Where does bacterial replication start? Rules for predicting the oriC region.

Published in:

Nucleic Acids Research, 2004, v. 32, n. 13, p. 3781, doi. 10.1093/nar/gkh699

By:

Mackiewicz, Paweł;
Zakrzewska-Czerwińska, Jolanta;
Zawilak, Anna;
Dudek, Mirosław R.;
Cebrat, Stanisław

Publication type:

Article

A YY1-binding site is required for accurate human LINE-1 transcription initiation.

Published in:

Nucleic Acids Research, 2004, v. 32, n. 13, p. 3846, doi. 10.1093/nar/gkh698

By:

Athanikar, Jyoti N.;
Badge, Richard M.;
Moran, John V.

Publication type:

Article