Found: 49
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Prediction of DNA i-motifs via machine learning.
- Published in:
- Nucleic Acids Research, 2024, v. 52, n. 5, p. 2188, doi. 10.1093/nar/gkae092
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- Article
Correction to 'HDGFRP3 interaction with 53BP1 promotes DNA double-strand break repair'.
- Published in:
- 2024
- Publication type:
- Correction Notice
When Paul Berg meets Donald Crothers: an achiral connection through protein biosynthesis.
- Published in:
- Nucleic Acids Research, 2024, v. 52, n. 5, p. 2130, doi. 10.1093/nar/gkae117
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- Article
The SMC5/6 complex: folding chromosomes back into shape when genomes take a break.
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- Nucleic Acids Research, 2024, v. 52, n. 5, p. 2112, doi. 10.1093/nar/gkae103
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- Article
G-quadruplex-mediated genomic instability drives SNVs in cancer.
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- Nucleic Acids Research, 2024, v. 52, n. 5, p. 2198, doi. 10.1093/nar/gkae098
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- Article
Transient states during the annealing of mismatched and bulged oligonucleotides.
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- Nucleic Acids Research, 2024, v. 52, n. 5, p. 2174, doi. 10.1093/nar/gkae091
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- Article
Molecular and thermodynamic determinants of self-assembly and hetero-oligomerization in the enterobacterial thermo-osmo-regulatory protein H-NS.
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- Nucleic Acids Research, 2024, v. 52, n. 5, p. 2157, doi. 10.1093/nar/gkae090
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- Article
RNAvigate: efficient exploration of RNA chemical probing datasets.
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- Nucleic Acids Research, 2024, v. 52, n. 5, p. 2231, doi. 10.1093/nar/gkae089
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- Article
Human pangenome analysis of sequences missing from the reference genome reveals their widespread evolutionary, phenotypic, and functional roles.
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- Nucleic Acids Research, 2024, v. 52, n. 5, p. 2212, doi. 10.1093/nar/gkae086
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- Article
Correction to 'PigBiobank: a valuable resource for understanding genetic and biological mechanisms of diverse complex traits in pigs'.
- Published in:
- 2024
- Publication type:
- Correction Notice
G-quadruplexes on chromosomal DNA negatively regulates topoisomerase 1 activity.
- Published in:
- Nucleic Acids Research, 2024, v. 52, n. 5, p. 2142, doi. 10.1093/nar/gkae073
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- Article
The origin of different bending stiffness between double-stranded RNA and DNA revealed by magnetic tweezers and simulations.
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- Nucleic Acids Research, 2024, v. 52, n. 5, p. 2519, doi. 10.1093/nar/gkae063
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- Article
Selection-free precise gene repair using high-capacity adenovector delivery of advanced prime editing systems rescues dystrophin synthesis in DMD muscle cells.
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- Nucleic Acids Research, 2024, v. 52, n. 5, p. 2740, doi. 10.1093/nar/gkae057
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- Article
Nucleotide-level distance metrics to quantify alternative splicing implemented in TranD.
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- Nucleic Acids Research, 2024, v. 52, n. 5, p. e28, doi. 10.1093/nar/gkae056
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- Article
Xrp1 governs the stress response program to spliceosome dysfunction.
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- Nucleic Acids Research, 2024, v. 52, n. 5, p. 2093, doi. 10.1093/nar/gkae055
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- Article
Two birds with one stone: SGI1 can stabilize itself and expel the IncC helper by hijacking the plasmid parABS system.
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- Nucleic Acids Research, 2024, v. 52, n. 5, p. 2498, doi. 10.1093/nar/gkae050
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- Article
Large-scale duplication events underpin population-level flexibility in tRNA gene copy number in Pseudomonas fluorescens SBW25.
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- Nucleic Acids Research, 2024, v. 52, n. 5, p. 2446, doi. 10.1093/nar/gkae049
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- Article
Mage transposon: a novel gene delivery system for mammalian cells.
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- Nucleic Acids Research, 2024, v. 52, n. 5, p. 2724, doi. 10.1093/nar/gkae048
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- Article
The unique dual targeting of AGO1 by two types of PRMT enzymes promotes phasiRNA loading in Arabidopsis thaliana.
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- Nucleic Acids Research, 2024, v. 52, n. 5, p. 2480, doi. 10.1093/nar/gkae045
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- Publication type:
- Article
EquiPNAS: improved protein–nucleic acid binding site prediction using protein-language-model-informed equivariant deep graph neural networks.
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- Nucleic Acids Research, 2024, v. 52, n. 5, p. e27, doi. 10.1093/nar/gkae039
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- Article
SHIFTR enables the unbiased identification of proteins bound to specific RNA regions in live cells.
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- Nucleic Acids Research, 2024, v. 52, n. 5, p. e26, doi. 10.1093/nar/gkae038
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- Article
Structural insights into the HDAC4–MEF2A–DNA complex and its implication in long-range transcriptional regulation.
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- Nucleic Acids Research, 2024, v. 52, n. 5, p. 2711, doi. 10.1093/nar/gkae036
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- Article
Ribosomal frameshifting at normal codon repeats recodes functional chimeric proteins in human.
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- Nucleic Acids Research, 2024, v. 52, n. 5, p. 2463, doi. 10.1093/nar/gkae035
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- Article
Structural investigation of pathogenic RFC1 AAGGG pentanucleotide repeats reveals a role of G-quadruplex in dysregulated gene expression in CANVAS.
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- Nucleic Acids Research, 2024, v. 52, n. 5, p. 2698, doi. 10.1093/nar/gkae032
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- Article
Translation variation across genetic backgrounds reveals a post-transcriptional buffering signature in yeast.
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- Nucleic Acids Research, 2024, v. 52, n. 5, p. 2434, doi. 10.1093/nar/gkae030
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- Article
MMCT-Loop: a mix model-based pipeline for calling targeted 3D chromatin loops.
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- Nucleic Acids Research, 2024, v. 52, n. 5, p. e25, doi. 10.1093/nar/gkae029
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- Publication type:
- Article
Understanding intercalative modulation of G-rich sequence folding: solution structure of a TINA-conjugated antiparallel DNA triplex.
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- Nucleic Acids Research, 2024, v. 52, n. 5, p. 2686, doi. 10.1093/nar/gkae028
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- Publication type:
- Article
NMR measurements of transient low-populated tautomeric and anionic Watson–Crick-like G·T/U in RNA:DNA hybrids: implications for the fidelity of transcription and CRISPR/Cas9 gene editing.
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- Nucleic Acids Research, 2024, v. 52, n. 5, p. 2672, doi. 10.1093/nar/gkae027
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- Article
Uncovering the roles of DNA hemi-methylation in transcriptional regulation using MspJI-assisted hemi-methylation sequencing.
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- Nucleic Acids Research, 2024, v. 52, n. 5, p. e24, doi. 10.1093/nar/gkae023
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- Article
Smoother: on-the-fly processing of interactome data using prefix sums.
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- Nucleic Acids Research, 2024, v. 52, n. 5, p. e23, doi. 10.1093/nar/gkae008
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- Article
Trans-complementation by the RecB nuclease domain of RecBCD enzyme reveals new insight into RecA loading upon χ recognition.
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- Nucleic Acids Research, 2024, v. 52, n. 5, p. 2578, doi. 10.1093/nar/gkae007
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- Article
Site-specific acetylation of polynucleotide kinase 3′-phosphatase regulates its distinct role in DNA repair pathways.
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- Nucleic Acids Research, 2024, v. 52, n. 5, p. 2416, doi. 10.1093/nar/gkae002
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- Article
STIM1 translocation to the nucleus protects cells from DNA damage.
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- Nucleic Acids Research, 2024, v. 52, n. 5, p. 2389, doi. 10.1093/nar/gkae001
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- Publication type:
- Article
Homology recognition without double-stranded DNA-strand separation in D-loop formation by RecA.
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- Nucleic Acids Research, 2024, v. 52, n. 5, p. 2565, doi. 10.1093/nar/gkad1260
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- Article
Thiolutin has complex effects in vivo but is a direct inhibitor of RNA polymerase II in vitro.
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- Nucleic Acids Research, 2024, v. 52, n. 5, p. 2546, doi. 10.1093/nar/gkad1258
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- Article
Aberrant DNA repair reveals a vulnerability in histone H3.3-mutant brain tumors.
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- Nucleic Acids Research, 2024, v. 52, n. 5, p. 2372, doi. 10.1093/nar/gkad1257
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- Article
Rif2 interaction with Rad50 counteracts Tel1 functions in checkpoint signalling and DNA tethering by releasing Tel1 from MRX binding.
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- Nucleic Acids Research, 2024, v. 52, n. 5, p. 2355, doi. 10.1093/nar/gkad1246
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- Article
METTL3 drives telomere targeting of TERRA lncRNA through m<sup>6</sup>A-dependent R-loop formation: a therapeutic target for ALT-positive neuroblastoma.
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- Nucleic Acids Research, 2024, v. 52, n. 5, p. 2648, doi. 10.1093/nar/gkad1242
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- Article
The missing part: the Archaeoglobus fulgidus Argonaute forms a functional heterodimer with an N-L1-L2 domain protein.
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- Nucleic Acids Research, 2024, v. 52, n. 5, p. 2530, doi. 10.1093/nar/gkad1241
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- Article
USP1-dependent nucleolytic expansion of PRIMPOL-generated nascent DNA strand discontinuities during replication stress.
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- Nucleic Acids Research, 2024, v. 52, n. 5, p. 2340, doi. 10.1093/nar/gkad1237
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- Article
Heterogeneous nuclear ribonucleoprotein K promotes cap-independent translation initiation of retroviral mRNAs.
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- Nucleic Acids Research, 2024, v. 52, n. 5, p. 2625, doi. 10.1093/nar/gkad1221
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- Article
The disordered N-terminal tail of SARS-CoV-2 Nucleocapsid protein forms a dynamic complex with RNA.
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- Nucleic Acids Research, 2024, v. 52, n. 5, p. 2609, doi. 10.1093/nar/gkad1215
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- Article
piRNA generation is associated with the pioneer round of translation in stem cells.
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- Nucleic Acids Research, 2024, v. 52, n. 5, p. 2590, doi. 10.1093/nar/gkad1212
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- Article
Global Hfq-mediated RNA interactome of nitrogen starved Escherichia coli uncovers a conserved post-transcriptional regulatory axis required for optimal growth recovery.
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- Nucleic Acids Research, 2024, v. 52, n. 5, p. 2323, doi. 10.1093/nar/gkad1211
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- Article
PRC1 directs PRC2-H3K27me3 deposition to shield adult spermatogonial stem cells from differentiation.
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- Nucleic Acids Research, 2024, v. 52, n. 5, p. 2306, doi. 10.1093/nar/gkad1203
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- Article
G-quadruplexes control hepatitis B virus replication by promoting cccDNA transcription and phase separation in hepatocytes.
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- Nucleic Acids Research, 2024, v. 52, n. 5, p. 2290, doi. 10.1093/nar/gkad1200
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- Publication type:
- Article
Histone lactylation-boosted ALKBH3 potentiates tumor progression and diminished promyelocytic leukemia protein nuclear condensates by m<sup>1</sup>A demethylation of SP100A.
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- Nucleic Acids Research, 2024, v. 52, n. 5, p. 2273, doi. 10.1093/nar/gkad1193
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- Article
Intrinsically disordered regions of the Msn2 transcription factor encode multiple functions using interwoven sequence grammars.
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- Nucleic Acids Research, 2024, v. 52, n. 5, p. 2260, doi. 10.1093/nar/gkad1191
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- Article
Yeast zinc cluster transcription factors involved in the switch from fermentation to respiration show interdependency for DNA binding revealing a novel type of DNA recognition.
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- Nucleic Acids Research, 2024, v. 52, n. 5, p. 2242, doi. 10.1093/nar/gkad1185
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- Article