Works matching IS 03051048 AND DT 2023 AND VI 51 AND IP 19

Results: 48

Correction to 'Plasmids pick a bacterial partner before committing to conjugation'.

Published in:: 2023
Publication type:: Correction Notice

Correction to 'Dynamic structure of T4 gene 32 protein filaments facilitates rapid noncooperative protein dissociation'.

Published in:: 2023
Publication type:: Correction Notice

Coordination between aminoacylation and editing to protect against proteotoxicity.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 19, p. 10606, doi. 10.1093/nar/gkad778

By:

Zhang, Hong;
Murphy, Parker;
Yu, Jason;
Lee, Sukyeong;
Tsai, Francis T F;
Hoof, Ambro van;
Ling, Jiqiang

Publication type:

Article

Short-range end resection requires ATAD5-mediated PCNA unloading for faithful homologous recombination.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 19, p. 10519, doi. 10.1093/nar/gkad776

By:

Park, Su Hyung;
Kim, Namwoo;
Kang, Nalae;
Ryu, Eunjin;
Lee, Eun A;
Ra, Jae Sun;
Gartner, Anton;
Kang, Sukhyun;
Myung, Kyungjae;
Lee, Kyoo-young

Publication type:

Article

Seryl-tRNA synthetase promotes translational readthrough by mRNA binding and involvement of the selenocysteine incorporation machinery.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 19, p. 10768, doi. 10.1093/nar/gkad773

By:

Liu, Ze;
Wang, Justin;
Shi, Yi;
Yee, Brian A;
Terrey, Markus;
Zhang, Qian;
Lee, Jenq-Chang;
Lin, Kuo-I;
Wang, Andrew H-J;
Ackerman, Susan L;
Yeo, Gene W;
Cui, Haissi;
Yang, Xiang-Lei

Publication type:

Article

Correction to 'DDX17 is required for efficient DSB repair at DNA: RNA hybrid deficient loci'.

Published in:: 2023
Publication type:: Correction Notice

The arginine methyltransferase Prmt1 coordinates the germline arginine methylome essential for spermatogonial homeostasis and male fertility.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 19, p. 10428, doi. 10.1093/nar/gkad769

By:

Azhar, Muhammad;
Xu, Caoling;
Jiang, Xue;
Li, Wenqing;
Cao, Yuzhu;
Zhu, Xiaoli;
Xing, Xuemei;
Wu, Limin;
Zou, Jiaqi;
Meng, Lan;
Cheng, Yu;
Han, Wenjie;
Bao, Jianqiang

Publication type:

Article

Global profiling of ribosomal protein acetylation reveals essentiality of acetylation homeostasis in maintaining ribosome assembly and function.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 19, p. 10411, doi. 10.1093/nar/gkad768

By:

Ni, Jinjing;
Li, Shuxian;
Lai, Yanan;
Wang, Zuoqiang;
Wang, Danni;
Tan, Yongcong;
Fan, Yongqiang;
Lu, Jie;
Yao, Yu-Feng

Publication type:

Article

The TRIM69-MST2 signaling axis regulates centrosome dynamics and chromosome segregation.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 19, p. 10568, doi. 10.1093/nar/gkad766

By:

Wang, Yilin;
Risteski, Patrik;
Yang, Yang;
Chen, Huan;
Droby, Gaith;
Walens, Andrea;
Jayaprakash, Deepika;
Troester, Melissa;
Herring, Laura;
Chernoff, Jonathan;
Tolić, Iva M;
Bowser, Jessica;
Vaziri, Cyrus

Publication type:

Article

Distinct RPA functions promote eukaryotic DNA replication initiation and elongation.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 19, p. 10506, doi. 10.1093/nar/gkad765

By:

Pike, Alexandra M;
Friend, Caitlin M;
Bell, Stephen P

Publication type:

Article

Telomeric i-motifs and C-strands inhibit parallel G-quadruplex extension by telomerase.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 19, p. 10395, doi. 10.1093/nar/gkad764

By:

El-Khoury, Roberto;
Roman, Morgane;
Assi, Hala Abou;
Moye, Aaron L;
Bryan, Tracy M;
Damha, Masad J

Publication type:

Article

High-throughput, fluorescent-aptamer-based measurements of steady-state transcription rates for the Mycobacterium tuberculosis RNA polymerase.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 19, p. e99, doi. 10.1093/nar/gkad761

By:

Jensen, Drake;
Ruiz Manzano, Ana;
Rector, Maxwell;
Tomko, Eric J;
Record, M Thomas;
Galburt, Eric A

Publication type:

Article

Diverse regulatory pathways modulate bet hedging of competence induction in epigenetically-differentiated phase variants of Streptococcus pneumoniae.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 19, p. 10375, doi. 10.1093/nar/gkad760

By:

Kwun, Min Jung;
Ion, Alexandru V;
Oggioni, Marco R;
Bentley, Stephen D;
Croucher, Nicholas J

Publication type:

Article

Unfolding of an RNA G-quadruplex motif in the negative strand genome of porcine reproductive and respiratory syndrome virus by host and viral helicases to promote viral replication.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 19, p. 10752, doi. 10.1093/nar/gkad759

By:

Fang, Puxian;
Xie, Congbao;
Pan, Ting;
Cheng, Ting;
Chen, Wei;
Xia, Sijin;
Ding, Tong;
Fang, Junkang;
Zhou, Yanrong;
Fang, Liurong;
Wei, Dengguo;
Xiao, Shaobo

Publication type:

Article

Unmodificated stepless regulation of CRISPR/Cas12a multi-performance.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 19, p. 10795, doi. 10.1093/nar/gkad748

By:

Zhao, Rong;
Luo, Wang;
Wu, You;
Zhang, Li;
Liu, Xin;
Li, Junjie;
Yang, Yujun;
Wang, Li;
Wang, Luojia;
Han, Xiaole;
Wang, Zhongzhong;
Zhang, Jianhong;
Lv, Ke;
Chen, Tingmei;
Xie, Guoming

Publication type:

Article

Learning from the unknown: exploring the range of bacterial functionality.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 19, p. 10162, doi. 10.1093/nar/gkad757

By:

Mahlich, Yannick;
Zhu, Chengsheng;
Chung, Henri;
Velaga, Pavan K;
De Paolis Kaluza, M Clara;
Radivojac, Predrag;
Friedberg, Iddo;
Bromberg, Yana

Publication type:

Article

Watching ion-driven kinetics of ribozyme folding and misfolding caused by energetic and topological frustration one molecule at a time.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 19, p. 10737, doi. 10.1093/nar/gkad755

By:

Hori, Naoto;
Thirumalai, D

Publication type:

Article

Contributions of histone tail clipping and acetylation in nucleosome transcription by RNA polymerase II.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 19, p. 10364, doi. 10.1093/nar/gkad754

By:

Oishi, Takumi;
Hatazawa, Suguru;
Kujirai, Tomoya;
Kato, Junko;
Kobayashi, Yuki;
Ogasawara, Mitsuo;
Akatsu, Munetaka;
Ehara, Haruhiko;
Sekine, Shun-ichi;
Hayashi, Gosuke;
Takizawa, Yoshimasa;
Kurumizaka, Hitoshi

Publication type:

Article

A multi-scale expression and regulation knowledge base for Escherichia coli.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 19, p. 10176, doi. 10.1093/nar/gkad750

By:

Lamoureux, Cameron R;
Decker, Katherine T;
Sastry, Anand V;
Rychel, Kevin;
Gao, Ye;
McConn, John Luke;
Zielinski, Daniel C;
Palsson, Bernhard O

Publication type:

Article

Golden Standard: a complete standard, portable, and interoperative MoClo tool for model and non-model proteobacteria.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 19, p. e98, doi. 10.1093/nar/gkad758

By:

Blázquez, Blas;
León, David San;
Torres-Bacete, Jesús;
Gómez-Luengo, Álvaro;
Kniewel, Ryan;
Martínez, Igor;
Sordon, Sandra;
Wilczak, Aleksandra;
Salgado, Sergio;
Huszcza, Ewa;
Popłoński, Jarosław;
Prieto, Auxiliadora;
Nogales, Juan

Publication type:

Article

Transgene-free, virus-based gene silencing in plants by artificial microRNAs derived from minimal precursors.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 19, p. 10719, doi. 10.1093/nar/gkad747

By:

Cisneros, Adriana E;
Martín-García, Tamara;
Primc, Anamarija;
Kuziuta, Wojtek;
Sánchez-Vicente, Javier;
Aragonés, Verónica;
Daròs, José-Antonio;
Carbonell, Alberto

Publication type:

Article

Retraction of 'G-quadruplex structural transition driven by a platinum compound'.

Published in:: 2023
Publication type:: Correction Notice

-1 Programmed ribosomal frameshifting in Class 2 umbravirus-like RNAs uses multiple long-distance interactions to shift between active and inactive structures and destabilize the frameshift stimulating element.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 19, p. 10700, doi. 10.1093/nar/gkad744

By:

Mikkelsen, Anna A;
Gao, Feng;
Carino, Elizabeth;
Bera, Sayanta;
Simon, Anne E

Publication type:

Article

Characterization of a promiscuous DNA sulfur binding domain and application in site-directed RNA base editing.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 19, p. 10782, doi. 10.1093/nar/gkad743

By:

Hu, Wenyue;
Yang, Bingxu;
Xiao, Qingjie;
Wang, Yuli;
Shuai, Yuting;
Zhao, Gong;
Zhang, Lixin;
Deng, Zixin;
He, Xinyi;
Liu, Guang

Publication type:

Article

TERRA expression is regulated by the telomere-binding proteins POT-1 and POT-2 in Caenorhabditis elegans.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 19, p. 10681, doi. 10.1093/nar/gkad742

By:

Manzato, Caterina;
Larini, Luca;
Oss Pegorar, Claudio;
Dello Stritto, Maria Rosaria;
Jurikova, Katarina;
Jantsch, Verena;
Cusanelli, Emilio

Publication type:

Article

Temporal analyses reveal a pivotal role for sense and antisense enhancer RNAs in coordinate immunoglobulin lambda locus activation.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 19, p. 10344, doi. 10.1093/nar/gkad741

By:

Gao, Zeqian;
Smith, Alastair L;
Scott, James N F;
Bevington, Sarah L;
Boyes, Joan

Publication type:

Article

Rep protein accommodates together dsDNA and ssDNA which enables a loop-back mechanism to plasmid DNA replication initiation.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 19, p. 10551, doi. 10.1093/nar/gkad740

By:

Wegrzyn, Katarzyna;
Oliwa, Monika;
Nowacka, Marzena;
Zabrocka, Elżbieta;
Bury, Katarzyna;
Purzycki, Piotr;
Czaplewska, Paulina;
Pipka, Justyna;
Giraldo, Rafael;
Konieczny, Igor

Publication type:

Article

Activation of Csm6 ribonuclease by cyclic nucleotide binding: in an emergency, twist to open.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 19, p. 10590, doi. 10.1093/nar/gkad739

By:

McQuarrie, Stuart;
Athukoralage, Januka S;
McMahon, Stephen A;
Graham, Shirley;
Ackermann, Katrin;
Bode, Bela E;
White, Malcolm F;
Gloster, Tracey M

Publication type:

Article

Bi-directional nucleosome sliding by the Chd1 chromatin remodeler integrates intrinsic sequence-dependent and ATP-dependent nucleosome positioning.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 19, p. 10326, doi. 10.1093/nar/gkad738

By:

Park, Sangwoo;
Brandani, Giovanni B;
Ha, Taekjip;
Bowman, Gregory D

Publication type:

Article

Correction to 'Reclassification of family A DNA polymerases reveals novel functional subfamilies and distinctive structural features'.

Published in:: 2023
Publication type:: Correction Notice

Quantum biological insights into CRISPR-Cas9 sgRNA efficiency from explainable-AI driven feature engineering.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 19, p. 10147, doi. 10.1093/nar/gkad736

By:

Noshay, Jaclyn M;
Walker, Tyler;
Alexander, William G;
Klingeman, Dawn M;
Romero, Jonathon;
Walker, Angelica M;
Prates, Erica;
Eckert, Carrie;
Irle, Stephan;
Kainer, David;
Jacobson, Daniel A

Publication type:

Article

Epigenetic reprogramming of a distal developmental enhancer cluster drives SOX2 overexpression in breast and lung adenocarcinoma.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 19, p. 10109, doi. 10.1093/nar/gkad734

By:

Abatti, Luis E;
Lado-Fernández, Patricia;
Huynh, Linh;
Collado, Manuel;
Hoffman, Michael M;
Mitchell, Jennifer A

Publication type:

Article

RNF8 ubiquitylation of XRN2 facilitates R-loop resolution and restrains genomic instability in BRCA1 mutant cells.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 19, p. 10484, doi. 10.1093/nar/gkad733

By:

Krishnan, Rehna;
Lapierre, Mariah;
Gautreau, Brandon;
Nixon, Kevin C J;
El Ghamrasni, Samah;
Patel, Parasvi S;
Hao, Jun;
Yerlici, V Talya;
Guturi, Kiran Kumar Naidu;
St-Germain, Jonathan;
Mateo, Francesca;
Saad, Amine;
Algouneh, Arash;
Earnshaw, Rebecca;
Shili, Duan;
Seitova, Alma;
Miller, Joshua;
Khosraviani, Negin;
Penn, Adam;
Ho, Brandon

Publication type:

Article

OTUD5 limits replication fork instability by organizing chromatin remodelers.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 19, p. 10467, doi. 10.1093/nar/gkad732

By:

de Vivo, Angelo;
Song, Hongseon;
Lee, Yujin;
Tirado-Class, Neysha;
Sanchez, Anthony;
Westerheide, Sandy;
Dungrawala, Huzefa;
Kee, Younghoon

Publication type:

Article

Unraveling the role of ZNF506 as a human PBS-pro-targeting protein for ERVP repression.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 19, p. 10309, doi. 10.1093/nar/gkad731

By:

Wu, Qian;
Fang, Lu;
Wang, Yixuan;
Yang, Peng

Publication type:

Article

Mapping the recognition pathway of cyclobutane pyrimidine dimer in DNA by Rad4/XPC.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 19, p. 10132, doi. 10.1093/nar/gkad730

By:

Jakhar, Nikhil;
Prabhakant, Akshay;
Krishnan, Marimuthu

Publication type:

Article

Post-transcriptional repression of CFP-1 expands the regulatory repertoire of LIN-41/TRIM71.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 19, p. 10668, doi. 10.1093/nar/gkad729

By:

Kumari, Pooja;
Thuestad, Lars Harald;
Ciosk, Rafal

Publication type:

Article

Different modification pathways for m<sup>1</sup>A58 incorporation in yeast elongator and initiator tRNAs.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 19, p. 10653, doi. 10.1093/nar/gkad722

By:

Yared, Marcel-Joseph;
Yoluç, Yasemin;
Catala, Marjorie;
Tisné, Carine;
Kaiser, Stefanie;
Barraud, Pierre

Publication type:

Article

A genetic screen identifies BEND3 as a regulator of bivalent gene expression and global DNA methylation.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 19, p. 10292, doi. 10.1093/nar/gkad719

By:

Yakhou, Lounis;
Azogui, Anaelle;
Gupta, Nikhil;
Richard Albert, Julien;
Miura, Fumihito;
Ferry, Laure;
Yamaguchi, Kosuke;
Battault, Sarah;
Therizols, Pierre;
Bonhomme, Frédéric;
Bethuel, Elouan;
Sarkar, Arpita;
Greenberg, Maxim V C;
Arimondo, Paola B;
Cristofari, Gael;
Kirsh, Olivier;
Ito, Takashi;
Defossez, Pierre-Antoine

Publication type:

Article

Cleavage kinetics of human mitochondrial RNase P and contribution of its non-nuclease subunits.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 19, p. 10536, doi. 10.1093/nar/gkad713

By:

Vilardo, Elisa;
Toth, Ursula;
Hazisllari, Enxhi;
Hartmann, Roland K;
Rossmanith, Walter

Publication type:

Article

The Swi-Snf chromatin remodeling complex mediates gene repression through metabolic control.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 19, p. 10278, doi. 10.1093/nar/gkad711

By:

Church, Michael C;
Price, Andrew;
Li, Hua;
Workman, Jerry L

Publication type:

Article

Accessible gene borders establish a core structural unit for chromatin architecture in Arabidopsis.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 19, p. 10261, doi. 10.1093/nar/gkad710

By:

Lee, Hongwoo;
Seo, Pil Joon

Publication type:

Article

HapX-mediated H2B deub1 and SreA-mediated H2A.Z deposition coordinate in fungal iron resistance.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 19, p. 10238, doi. 10.1093/nar/gkad708

By:

Sun, Kewei;
Li, Yiqing;
Gai, Yunpeng;
Wang, Jingrui;
Jian, Yunqing;
Liu, Xin;
Wu, Liang;
Shim, Won-Bo;
Lee, Yin-Won;
Ma, Zhonghua;
Haas, Hubertus;
Yin, Yanni

Publication type:

Article

A comprehensive analysis of translational misdecoding pattern and its implication on genetic code evolution.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 19, p. 10642, doi. 10.1093/nar/gkad707

By:

Katoh, Takayuki;
Suga, Hiroaki

Publication type:

Article

Sustained pigmentation causes DNA damage and invokes translesion polymerase Polκ for repair in melanocytes.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 19, p. 10451, doi. 10.1093/nar/gkad704

By:

Ghazi, Madeeha;
Khanna, Shivangi;
Subramaniam, Yogaspoorthi;
Rengaraju, Jeyashri;
Sultan, Farina;
Gupta, Iti;
Sharma, Kanupriya;
Chandna, Sudhir;
Gokhale, Rajesh S;
Natarajan, Vivek T

Publication type:

Article

Srsf1 and Elavl1 act antagonistically on neuronal fate choice in the developing neocortex by controlling TrkC receptor isoform expression.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 19, p. 10218, doi. 10.1093/nar/gkad703

By:

Weber, A Ioana;
Parthasarathy, Srinivas;
Borisova, Ekaterina;
Epifanova, Ekaterina;
Preußner, Marco;
Rusanova, Alexandra;
Ambrozkiewicz, Mateusz C;
Bessa, Paraskevi;
Newman, Andrew G;
Müller, Lisa;
Schaal, Heiner;
Heyd, Florian;
Tarabykin, Victor

Publication type:

Article

HIRA-mediated loading of histone variant H3.3 controls androgen-induced transcription by regulation of AR/BRD4 complex assembly at enhancers.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 19, p. 10194, doi. 10.1093/nar/gkad700

By:

Morozov, Viacheslav M;
Riva, Alberto;
Sarwar, Sadia;
Kim, Wan-Ju;
Li, Jianping;
Zhou, Lei;
Licht, Jonathan D;
Daaka, Yehia;
Ishov, Alexander M

Publication type:

Article

Let's make it clear: systematic exploration of mitochondrial DNA– and RNA–protein complexes by complexome profiling.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 19, p. 10619, doi. 10.1093/nar/gkad697

By:

Potter, Alisa;
Cabrera-Orefice, Alfredo;
Spelbrink, Johannes N

Publication type:

Article