Works matching IS 03051048 AND DT 2023 AND VI 51 AND IP 12

Results: 38

Miniature RNAs are embedded in an exceptionally protein-rich mitoribosome via an elaborate assembly pathway.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 12, p. 6443, doi. 10.1093/nar/gkad422

By:

Valach, Matus;
Benz, Corinna;
Aguilar, Lisbeth C;
Gahura, Ondřej;
Faktorová, Drahomíra;
Zíková, Alena;
Oeffinger, Marlene;
Burger, Gertraud;
Gray, Michael W;
Lukeš, Julius

Publication type:

Article

Correction to 'ATM-mediated ELL phosphorylation enhances its self-association through increased EAF1 interaction and inhibits global transcription during genotoxic stress'.

Published in:: 2023
Publication type:: Correction Notice

Pyruvate Kinase M (PKM) binds ribosomes in a poly-ADP ribosylation dependent manner to induce translational stalling.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 12, p. 6461, doi. 10.1093/nar/gkad440

By:

Kejiou, Nevraj S;
Ilan, Lena;
Aigner, Stefan;
Luo, Enching;
Tonn, Tori;
Ozadam, Hakan;
Lee, Muyoung;
Cole, Gregory B;
Rabano, Ines;
Rajakulendran, Nishani;
Yee, Brian A;
Najafabadi, Hamed S;
Moraes, Trevor F;
Angers, Stephane;
Yeo, Gene W;
Cenik, Can;
Palazzo, Alexander F

Publication type:

Article

A generalizable framework to comprehensively predict epigenome, chromatin organization, and transcriptome.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 12, p. 5931, doi. 10.1093/nar/gkad436

By:

Zhang, Zhenhao;
Feng, Fan;
Qiu, Yiyang;
Liu, Jie

Publication type:

Article

Whole-cell modeling of E. coli confirms that in vitro tRNA aminoacylation measurements are insufficient to support cell growth and predicts a positive feedback mechanism regulating arginine biosynthesis.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 12, p. 5911, doi. 10.1093/nar/gkad435

By:

Choi, Heejo;
Covert, Markus W

Publication type:

Article

Abasic site–peptide cross-links are blocking lesions repaired by AP endonucleases.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 12, p. 6321, doi. 10.1093/nar/gkad423

By:

Yudkina, Anna V;
Bulgakov, Nikita A;
Kim, Daria V;
Baranova, Svetlana V;
Ishchenko, Alexander A;
Saparbaev, Murat K;
Koval, Vladimir V;
Zharkov, Dmitry O

Publication type:

Article

Sequential disruption of SPLASH-identified vRNA–vRNA interactions challenges their role in influenza A virus genome packaging.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 12, p. 6479, doi. 10.1093/nar/gkad442

By:

Jakob, Celia;
Lovate, Gabriel L;
Desirò, Daniel;
Gießler, Lara;
Smyth, Redmond P;
Marquet, Roland;
Lamkiewicz, Kevin;
Marz, Manja;
Schwemmle, Martin;
Bolte, Hardin

Publication type:

Article

A conserved motif in the disordered linker of human MLH1 is vital for DNA mismatch repair and its function is diminished by a cancer family mutation.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 12, p. 6307, doi. 10.1093/nar/gkad418

By:

Wolf, Karla;
Kosinski, Jan;
Gibson, Toby J;
Wesch, Nicole;
Dötsch, Volker;
Genuardi, Maurizio;
Cordisco, Emanuela Lucci;
Zeuzem, Stefan;
Brieger, Angela;
Plotz, Guido

Publication type:

Article

Targeted tissue delivery of RNA therapeutics using antibody–oligonucleotide conjugates (AOCs).

Published in:

Nucleic Acids Research, 2023, v. 51, n. 12, p. 5901, doi. 10.1093/nar/gkad415

By:

Malecova, Barbora;
Burke, Rob S;
Cochran, Michael;
Hood, Michael D;
Johns, Rachel;
Kovach, Philip R;
Doppalapudi, Venkata R;
Erdogan, Gulin;
Arias, J Danny;
Darimont, Beatrice;
Miller, Christopher D;
Huang, Hanhua;
Geall, Andrew;
Younis, Husam S;
Levin, Arthur A

Publication type:

Article

Fendrr synergizes with Wnt signalling to regulate fibrosis related genes during lung development via its RNA:dsDNA triplex element.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 12, p. 6227, doi. 10.1093/nar/gkad395

By:

Ali, Tamer;
Rogala, Sandra;
Krause, Nina M;
Bains, Jasleen Kaur;
Melissari, Maria-Theodora;
Währisch, Sandra;
Schwalbe, Harald;
Herrmann, Bernhard G;
Grote, Phillip

Publication type:

Article

Knockout of protein phosphatase 1 in Leishmania major reveals its role during RNA polymerase II transcription termination.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 12, p. 6208, doi. 10.1093/nar/gkad394

By:

Kieft, Rudo;
Zhang, Yang;
Yan, Haidong;
Schmitz, Robert J;
Sabatini, Robert

Publication type:

Article

Single-stranded DNA recruitment mechanism in replication origin unwinding by DnaA initiator protein and HU, an evolutionary ubiquitous nucleoid protein.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 12, p. 6286, doi. 10.1093/nar/gkad389

By:

Yoshida, Ryusei;
Ozaki, Shogo;
Kawakami, Hironori;
Katayama, Tsutomu

Publication type:

Article

Epigenetic plasticity safeguards heterochromatin configuration in mammals.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 12, p. 6190, doi. 10.1093/nar/gkad387

By:

Fukuda, Kei;
Shimi, Takeshi;
Shimura, Chikako;
Ono, Takao;
Suzuki, Takehiro;
Onoue, Kenta;
Okayama, Satoko;
Miura, Hisashi;
Hiratani, Ichiro;
Ikeda, Kazuho;
Okada, Yasushi;
Dohmae, Naoshi;
Yonemura, Shigenobu;
Inoue, Azusa;
Kimura, Hiroshi;
Shinkai, Yoichi

Publication type:

Article

Hi-TrAC detects active sub-TADs and reveals internal organizations of super-enhancers.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 12, p. 6172, doi. 10.1093/nar/gkad378

By:

Cao, Yaqiang;
Liu, Shuai;
Cui, Kairong;
Tang, Qingsong;
Zhao, Keji

Publication type:

Article

Deep integrative models for large-scale human genomics.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 12, p. e67, doi. 10.1093/nar/gkad373

By:

Sigurdsson, Arnór I;
Louloudis, Ioannis;
Banasik, Karina;
Westergaard, David;
Winther, Ole;
Lund, Ole;
Ostrowski, Sisse Rye;
Erikstrup, Christian;
Pedersen, Ole Birger Vesterager;
Nyegaard, Mette;
Consortium, DBDS Genomic;
Brunak, Søren;
Vilhjálmsson, Bjarni J;
Rasmussen, Simon

Publication type:

Article

Attenuation of a DNA cruciform by a conserved regulator directs T3SS1 mediated virulence in Vibrio parahaemolyticus.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 12, p. 6156, doi. 10.1093/nar/gkad370

By:

Getz, Landon J;
Brown, Justin M;
Sobot, Lauren;
Chow, Alexandra;
Mahendrarajah, Jastina;
Thomas, Nikhil A

Publication type:

Article

Actin nucleators safeguard replication forks by limiting nascent strand degradation.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 12, p. 6337, doi. 10.1093/nar/gkad369

By:

Nieminuszczy, Jadwiga;
Martin, Peter R;
Broderick, Ronan;
Krwawicz, Joanna;
Kanellou, Alexandra;
Mocanu, Camelia;
Bousgouni, Vicky;
Smith, Charlotte;
Wen, Kuo-Kuang;
Woodward, Beth L;
Bakal, Chris;
Shackley, Fiona;
Aguilera, Andrés;
Stewart, Grant S;
Vyas, Yatin M;
Niedzwiedz, Wojciech

Publication type:

Article

A new G-quadruplex-specific photosensitizer inducing genome instability in cancer cells by triggering oxidative DNA damage and impeding replication fork progression.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 12, p. 6264, doi. 10.1093/nar/gkad365

By:

Deiana, Marco;
Andrés Castán, José María;
Josse, Pierre;
Kahsay, Abraha;
Sánchez, Darío Puchán;
Morice, Korentin;
Gillet, Natacha;
Ravindranath, Ranjitha;
Patel, Ankit Kumar;
Sengupta, Pallabi;
Obi, Ikenna;
Rodriguez-Marquez, Eva;
Khrouz, Lhoussain;
Dumont, Elise;
Abad Galán, Laura;
Allain, Magali;
Walker, Bright;
Ahn, Hyun Seo;
Maury, Olivier;
Blanchard, Philippe

Publication type:

Article

Replisome dysfunction upon inducible TIMELESS degradation synergizes with ATR inhibition to trigger replication catastrophe.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 12, p. 6246, doi. 10.1093/nar/gkad363

By:

Patel, Jinal A;
Zezelic, Camryn;
Rageul, Julie;
Saldanha, Joanne;
Khan, Arafat;
Kim, Hyungjin

Publication type:

Article

Conformational dynamics of the RNA binding channel regulates loading and translocation of the DEAH-box helicase Prp43.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 12, p. 6430, doi. 10.1093/nar/gkad362

By:

Enders, Marieke;
Ficner, Ralf;
Adio, Sarah

Publication type:

Article

Forkhead box protein D2 suppresses colorectal cancer by reprogramming enhancer interactions.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 12, p. 6143, doi. 10.1093/nar/gkad361

By:

Kim, Hyo-Min;
Kang, Byunghee;
Park, Sohyun;
Park, Hyorim;
Kim, Chan Johng;
Lee, Hyeonji;
Yoo, Mijoung;
Kweon, Mi-Na;
Im, Sin-Hyeog;
Kim, Tae Il;
Roh, Tae-Young

Publication type:

Article

A network of DZF proteins controls alternative splicing regulation and fidelity.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 12, p. 6411, doi. 10.1093/nar/gkad351

By:

Haque, Nazmul;
Will, Alexander;
Cook, Atlanta G;
Hogg, J Robert

Publication type:

Article

Nucleotide excision repair in Human cell lines lacking both XPC and CSB proteins.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 12, p. 6238, doi. 10.1093/nar/gkad334

By:

Lindsey-Boltz, Laura A;
Yang, Yanyan;
Kose, Cansu;
Deger, Nazli;
Eynullazada, Khagani;
Kawara, Hiroaki;
Sancar, Aziz

Publication type:

Article

DksA is a conserved master regulator of stress response in Acinetobacter baumannii.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 12, p. 6101, doi. 10.1093/nar/gkad341

By:

Maharjan, Ram P;
Sullivan, Geraldine J;
Adams, Felise G;
Shah, Bhumika S;
Hawkey, Jane;
Delgado, Natasha;
Semenec, Lucie;
Dinh, Hue;
Li, Liping;
Short, Francesca L;
Parkhill, Julian;
Paulsen, Ian T;
Barquist, Lars;
Eijkelkamp, Bart A;
Cain, Amy K

Publication type:

Article

Redefining normal breast cell populations using long noncoding RNAs.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 12, p. 6389, doi. 10.1093/nar/gkad339

By:

Bitar, Mainá;
Rivera, Isela Sarahi;
Almeida, Isabela;
Shi, Wei;
Ferguson, Kaltin;
Beesley, Jonathan;
Lakhani, Sunil R;
Edwards, Stacey L;
French, Juliet D

Publication type:

Article

The ribosome quality control factor Asc1 determines the fate of HSP70 mRNA on and off the ribosome.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 12, p. 6370, doi. 10.1093/nar/gkad338

By:

Alagar Boopathy, Lokha R;
Beadle, Emma;
Xiao, Alan RuoChen;
Garcia-Bueno Rico, Aitana;
Alecki, Celia;
Garcia de-Andres, Irene;
Edelmeier, Kyla;
Lazzari, Luca;
Amiri, Mehdi;
Vera, Maria

Publication type:

Article

Crol contributes to PRE-mediated repression and Polycomb group proteins recruitment in Drosophila.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 12, p. 6087, doi. 10.1093/nar/gkad336

By:

Erokhin, Maksim;
Brown, J Lesley;
Lomaev, Dmitry;
Vorobyeva, Nadezhda E;
Zhang, Liangliang;
Fab, Lika V;
Mazina, Marina Yu;
Kulakovskiy, Ivan V;
Ziganshin, Rustam H;
Schedl, Paul;
Georgiev, Pavel;
Sun, Ming-an;
Kassis, Judith A;
Chetverina, Darya

Publication type:

Article

Crucial role of iron in epigenetic rewriting during adipocyte differentiation mediated by JMJD1A and TET2 activity.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 12, p. 6120, doi. 10.1093/nar/gkad342

By:

Suzuki, Tomohiro;
Komatsu, Tetsuro;
Shibata, Hiroshi;
Tanioka, Akiko;
Vargas, Diana;
Kawabata-Iwakawa, Reika;
Miura, Fumihito;
Masuda, Shinnosuke;
Hayashi, Mayuko;
Tanimura-Inagaki, Kyoko;
Morita, Sumiyo;
Kohmaru, Junki;
Adachi, Koji;
Tobo, Masayuki;
Obinata, Hideru;
Hirayama, Tasuku;
Kimura, Hiroshi;
Sakai, Juro;
Nagasawa, Hideko;
Itabashi, Hideyuki

Publication type:

Article

Extraordinary long-stem confers resistance of intrinsic terminators to processive antitermination.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 12, p. 6073, doi. 10.1093/nar/gkad333

By:

Miguel-Arribas, Andrés;
Martín-María, Ana;
Alaerds, Eef C W;
Val-Calvo, Jorge;
Yuste, Luis;
Rojo, Fernando;
Abia, David;
Wu, Ling Juan;
Meijer, Wilfried J J

Publication type:

Article

Translational fidelity screens in mammalian cells reveal eIF3 and eIF4G2 as regulators of start codon selectivity.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 12, p. 6355, doi. 10.1093/nar/gkad329

By:

She, Richard;
Luo, Jingchuan;
Weissman, Jonathan S

Publication type:

Article

Prediction of cooperative homeodomain DNA binding sites from high-throughput-SELEX data.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 12, p. 6055, doi. 10.1093/nar/gkad318

By:

Cain, Brittany;
Webb, Jordan;
Yuan, Zhenyu;
Cheung, David;
Lim, Hee-Woong;
Kovall, Rhett A;
Weirauch, Matthew T;
Gebelein, Brian

Publication type:

Article

Depositing centromere repeats induces heritable intragenic heterochromatin establishment and spreading in Arabidopsis.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 12, p. 6039, doi. 10.1093/nar/gkad306

By:

Liu, Zhang-Wei;
Liu, Jie;
Liu, Fengquan;
Zhong, Xuehua

Publication type:

Article

Low RNA stability signifies increased post-transcriptional regulation of cell identity genes.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 12, p. 6020, doi. 10.1093/nar/gkad300

By:

Li, Yanqiang;
Yi, Yang;
Lv, Jie;
Gao, Xinlei;
Yu, Yang;
Babu, Sahana Suresh;
Bruno, Ivone;
Zhao, Dongyu;
Xia, Bo;
Peng, Weiqun;
Zhu, Jun;
Chen, Hong;
Zhang, Lili;
Cao, Qi;
Chen, Kaifu

Publication type:

Article

A potential histone-chaperone activity for the MIER1 histone deacetylase complex.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 12, p. 6006, doi. 10.1093/nar/gkad294

By:

Wang, Siyu;
Fairall, Louise;
Pham, Trong Khoa;
Ragan, Timothy J;
Vashi, Dipti;
Collins, Mark O;
Dominguez, Cyril;
Schwabe, John W R

Publication type:

Article

DNA strand asymmetry generated by CpG hemimethylation has opposing effects on CTCF binding.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 12, p. 5997, doi. 10.1093/nar/gkad293

By:

Thomas, Stacey L;
Xu, Ting-Hai;
Carpenter, Brittany L;
Pierce, Steven E;
Dickson, Bradley M;
Liu, Minmin;
Liang, Gangning;
Jones, Peter A

Publication type:

Article

Progesterone receptor mediates ovulatory transcription through RUNX transcription factor interactions and chromatin remodelling.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 12, p. 5981, doi. 10.1093/nar/gkad271

By:

Dinh, Doan T;
Breen, James;
Nicol, Barbara;
Foot, Natalie J;
Bersten, David C;
Emery, Alaknanda;
Smith, Kirsten M;
Wong, Ying Y;
Barry, Simon C;
Yao, Humphrey H C;
Robker, Rebecca L;
Russell, Darryl L

Publication type:

Article

Diverse targets of SMN2-directed splicing-modulating small molecule therapeutics for spinal muscular atrophy.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 12, p. 5948, doi. 10.1093/nar/gkad259

By:

Ottesen, Eric W;
Singh, Natalia N;
Luo, Diou;
Kaas, Bailey;
Gillette, Benjamin J;
Seo, Joonbae;
Jorgensen, Hannah J;
Singh, Ravindra N

Publication type:

Article

Epigenetic CpG duplex marks probed by an evolved DNA reader via a well-tempered conformational plasticity.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 12, p. 6495, doi. 10.1093/nar/gkad134

By:

Singh, Himanshu;
Das, Chandan K;
Buchmuller, Benjamin C;
Schäfer, Lars V;
Summerer, Daniel;
Linser, Rasmus

Publication type:

Article