Works matching IS 03051048 AND DT 2024 AND VI 52 AND IP 2

Results: 43

Correction to 'Expression and function of the homeodomain-containing protein Hex in thyroid cells'.

Published in:: 2024
Publication type:: Correction Notice

Correction to 'Comparison of cell response to chromatin and DNA damage'.

Published in:: 2024
Publication type:: Correction Notice

Correction to 'Probabilistic cell/domain-type assignment of spatial transcriptomics data with SpatialAnno'.

Published in:: 2024
Publication type:: Correction Notice

Correction to 'CasPEDIA Database: a functional classification system for class 2 CRISPR-Cas enzymes'.

Published in:: 2024
Publication type:: Correction Notice

Correction to 'Nanopore sensing reveals a preferential pathway for the co-translocational unfolding of a conjugative relaxase–DNA complex'.

Published in:: 2024
Publication type:: Correction Notice

A KDPG sensor RccR governs Pseudomonas aeruginosa carbon metabolism and aminoglycoside antibiotic tolerance.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 2, p. 967, doi. 10.1093/nar/gkad1201

By:

Wang, Yujue;
Wang, Zhipeng;
Chen, Weizhong;
Ren, Ze-Hui;
Gao, Hui;
Dai, Jiani;
Luo, Guan-Zheng;
Wu, Zhaowei;
Ji, Quanjiang

Publication type:

Article

tRNA shape is an identity element for an archaeal pyrrolysyl-tRNA synthetase from the human gut.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 2, p. 513, doi. 10.1093/nar/gkad1188

By:

Krahn, Natalie;
Zhang, Jingji;
Melnikov, Sergey V;
Tharp, Jeffery M;
Villa, Alessandra;
Patel, Armaan;
Howard, Rebecca J;
Gabir, Haben;
Patel, Trushar R;
Stetefeld, Jörg;
Puglisi, Joseph;
Söll, Dieter

Publication type:

Article

Isolation and detection of DNA–protein crosslinks in mammalian cells.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 2, p. 525, doi. 10.1093/nar/gkad1178

By:

Torrecilla, Ignacio;
Ruggiano, Annamaria;
Kiianitsa, Kostantin;
Aljarbou, Ftoon;
Lascaux, Pauline;
Hoslett, Gwendoline;
Song, Wei;
Maizels, Nancy;
Ramadan, Kristijan

Publication type:

Article

Correction to 'ribonucleotides embedded in template DNA impair mitochondrial RNA polymerase progression'.

Published in:: 2024
Publication type:: Correction Notice

Peak-agnostic high-resolution cis-regulatory circuitry mapping using single cell multiome data.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 2, p. 572, doi. 10.1093/nar/gkad1166

By:

Zhang, Zidong;
Ruf-Zamojski, Frederique;
Zamojski, Michel;
Bernard, Daniel J;
Chen, Xi;
Troyanskaya, Olga G;
Sealfon, Stuart C

Publication type:

Article

CRISPR-Cas immunity is repressed by the LysR-type transcriptional regulator PigU.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 2, p. 755, doi. 10.1093/nar/gkad1165

By:

Smith, Leah M;
Hampton, Hannah G;
Yevstigneyeva, Mariya S;
Mahler, Marina;
Paquet, Zacharie S M;
Fineran, Peter C

Publication type:

Article

Dynamic action of an intrinsically disordered protein in DNA compaction that induces mycobacterial dormancy.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 2, p. 816, doi. 10.1093/nar/gkad1149

By:

Nishiyama, Akihito;
Shimizu, Masahiro;
Narita, Tomoyuki;
Kodera, Noriyuki;
Ozeki, Yuriko;
Yokoyama, Akira;
Mayanagi, Kouta;
Yamaguchi, Takehiro;
Hakamata, Mariko;
Shaban, Amina Kaboso;
Tateishi, Yoshitaka;
Ito, Kosuke;
Matsumoto, Sohkichi

Publication type:

Article

Enzymic recognition of amino acids drove the evolution of primordial genetic codes.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 2, p. 558, doi. 10.1093/nar/gkad1160

By:

Douglas, Jordan;
Bouckaert, Remco;
Carter, Charles W;
Wills, Peter R

Publication type:

Article

Visualizing a two-state conformational ensemble in stem–loop 3 of the transcriptional regulator 7SK RNA.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 2, p. 940, doi. 10.1093/nar/gkad1159

By:

Camara, Momodou B;
Lange, Bret;
Yesselman, Joseph D;
Eichhorn, Catherine D

Publication type:

Article

Looking for a needle in a haystack: de novo phenotypic target identification reveals Hippo pathway-mediated miR-202 regulation of egg production.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 2, p. 738, doi. 10.1093/nar/gkad1154

By:

Janati-Idrissi, Sarah;
de Abreu, Mariana Roza;
Guyomar, Cervin;
de Mello, Fernanda;
Nguyen, Thaovi;
Mechkouri, Nazim;
Gay, Stéphanie;
Montfort, Jérôme;
Gonzalez, Anne Alicia;
Abbasi, Marzieh;
Bugeon, Jérôme;
Thermes, Violette;
Seitz, Hervé;
Bobe, Julien

Publication type:

Article

A prophage encoded ribosomal RNA methyltransferase regulates the virulence of Shiga-toxin-producing Escherichia coli (STEC).

Published in:

Nucleic Acids Research, 2024, v. 52, n. 2, p. 856, doi. 10.1093/nar/gkad1150

By:

Gong, Chen;
Chakraborty, Dolonchapa;
Koudelka, Gerald B

Publication type:

Article

Molecular mechanism of specific DNA sequence recognition by NRF1.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 2, p. 953, doi. 10.1093/nar/gkad1162

By:

Liu, Ke;
Li, Weifang;
Xiao, Yuqing;
Lei, Ming;
Zhang, Ming;
Min, Jinrong

Publication type:

Article

Editorial: Nucleic Acids Research virtual issue dedicated to nucleic acid therapeutics, 2018–2023.

Published in:

2024

By:

Belgrad, Jillian;
Fakih, Hassan H;
Johnson, Krystal C;
Corey, David R

Publication type:

Editorial

JMnorm: a novel joint multi-feature normalization method for integrative and comparative epigenomics.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 2, p. e11, doi. 10.1093/nar/gkad1146

By:

Xiang, Guanjue;
Guo, Yuchun;
Bumcrot, David;
Sigova, Alla

Publication type:

Article

The nuclease-associated short prokaryotic Argonaute system nonspecifically degrades DNA upon activation by target recognition.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 2, p. 844, doi. 10.1093/nar/gkad1145

By:

Lu, Xueling;
Xiao, Jun;
Wang, Longfei;
Zhu, Bin;
Huang, Fengtao

Publication type:

Article

Differential roles of positive and negative supercoiling in organizing the E. coli genome.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 2, p. 724, doi. 10.1093/nar/gkad1139

By:

Fu, Ziqi;
Guo, Monica S;
Zhou, Weiqiang;
Xiao, Jie

Publication type:

Article

Biophysical and structural characterization of a multifunctional viral genome packaging motor.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 2, p. 831, doi. 10.1093/nar/gkad1135

By:

Prokhorov, Nikolai S;
Davis, Christal R;
Maruthi, Kashyap;
Yang, Qin;
Sherman, Michael B;
Woodson, Michael;
White, Mark A;
Miller, Lohra M;
Jarrold, Martin F;
Catalano, Carlos E;
Morais, Marc C

Publication type:

Article

Interaction of histone H4 with Cse4 facilitates conformational changes in Cse4 for its sumoylation and mislocalization.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 2, p. 643, doi. 10.1093/nar/gkad1133

By:

Ohkuni, Kentaro;
Au, Wei-Chun;
Kazi, Amira Z;
Villamil, Mark;
Kaiser, Peter;
Basrai, Munira A

Publication type:

Article

New design strategies for ultra-specific CRISPR-Cas13a-based RNA detection with single-nucleotide mismatch sensitivity.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 2, p. 921, doi. 10.1093/nar/gkad1132

By:

Molina Vargas, Adrian M;
Sinha, Souvik;
Osborn, Raven;
Arantes, Pablo R;
Patel, Amun;
Dewhurst, Stephen;
Hardy, Dwight J;
Cameron, Andrew;
Palermo, Giulia;
O'Connell, Mitchell R

Publication type:

Article

HybridDBRpred: improved sequence-based prediction of DNA-binding amino acids using annotations from structured complexes and disordered proteins.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 2, p. e10, doi. 10.1093/nar/gkad1131

By:

Zhang, Jian;
Basu, Sushmita;
Kurgan, Lukasz

Publication type:

Article

MAE-seq refines regulatory elements across the genome.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 2, p. e9, doi. 10.1093/nar/gkad1129

By:

Zhu, Xiusheng;
Huang, Qitong;
Huang, Lei;
Luo, Jing;
Li, Qing;
Kong, Dashuai;
Deng, Biao;
Gu, Yi;
Wang, Xueyan;
Li, Chenying;
Kong, Siyuan;
Zhang, Yubo

Publication type:

Article

Language model-based B cell receptor sequence embeddings can effectively encode receptor specificity.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 2, p. 548, doi. 10.1093/nar/gkad1128

By:

Wang, Meng;
Patsenker, Jonathan;
Li, Henry;
Kluger, Yuval;
Kleinstein, Steven H

Publication type:

Article

Unveiling the RNA-mediated allosteric activation discloses functional hotspots in CRISPR-Cas13a.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 2, p. 906, doi. 10.1093/nar/gkad1127

By:

Sinha, Souvik;
Molina Vargas, Adrian M;
Arantes, Pablo R;
Patel, Amun;
O'Connell, Mitchell R;
Palermo, Giulia

Publication type:

Article

Chromatin accessibility and pioneer factor FOXA1 restrict glucocorticoid receptor action in prostate cancer.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 2, p. 625, doi. 10.1093/nar/gkad1126

By:

Helminen, Laura;
Huttunen, Jasmin;
Tulonen, Melina;
Aaltonen, Niina;
Niskanen, Einari A;
Palvimo, Jorma J;
Paakinaho, Ville

Publication type:

Article

DELTEX E3 ligases ubiquitylate ADP-ribosyl modification on nucleic acids.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 2, p. 801, doi. 10.1093/nar/gkad1119

By:

Zhu, Kang;
Suskiewicz, Marcin J;
Chatrin, Chatrin;
Strømland, Øyvind;
Dorsey, Bryan W;
Aucagne, Vincent;
Ahel, Dragana;
Ahel, Ivan

Publication type:

Article

The YAP1/TAZ-TEAD transcriptional network regulates gene expression at neuromuscular junctions in skeletal muscle fibers.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 2, p. 600, doi. 10.1093/nar/gkad1124

By:

Gessler, Lea;
Huraskin, Danyil;
Jian, Yongzhi;
Eiber, Nane;
Hu, Zhaoyong;
Prószyński, Tomasz J;
Hashemolhosseini, Said

Publication type:

Article

RNA-binding protein Nocte regulates Drosophila development by promoting translation reinitiation on mRNAs with long upstream open reading frames.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 2, p. 885, doi. 10.1093/nar/gkad1122

By:

Zhang, Tianyi;
Xue, Yutong;
Su, Shuaikun;
Altouma, Valerie;
Ho, Katherine;
Martindale, Jennifer L;
Lee, Seung-Kyu;
Shen, Weiping;
Park, Aaron;
Zhang, Yongqing;
De, Supriyo;
Gorospe, Myriam;
Wang, Weidong

Publication type:

Article

Hi-BDiSCO: folding 3D mesoscale genome structures from Hi-C data using brownian dynamics.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 2, p. 583, doi. 10.1093/nar/gkad1121

By:

Li, Zilong;
Schlick, Tamar

Publication type:

Article

Co-transcriptional folding of the glmS ribozyme enables a rapid response to metabolite.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 2, p. 872, doi. 10.1093/nar/gkad1120

By:

Lou, Yuan;
Woodson, Sarah A

Publication type:

Article

Self-delivering, chemically modified CRISPR RNAs for AAV co-delivery and genome editing in vivo.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 2, p. 977, doi. 10.1093/nar/gkad1125

By:

Zhang, Han;
Kelly, Karen;
Lee, Jonathan;
Echeverria, Dimas;
Cooper, David;
Panwala, Rebecca;
Amrani, Nadia;
Chen, Zexiang;
Gaston, Nicholas;
Wagh, Atish;
Newby, Gregory A;
Xie, Jun;
Liu, David R;
Gao, Guangping;
Wolfe, Scot A;
Khvorova, Anastasia;
Watts, Jonathan K;
Sontheimer, Erik J

Publication type:

Article

Modular cytosine base editing promotes epigenomic and genomic modifications.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 2, p. e8, doi. 10.1093/nar/gkad1118

By:

Weischedel, Julian;
Higgins, Laurence;
Rogers, Sally;
Gramalla-Schmitz, Anna;
Wyrzykowska, Paulina;
Borgoni, Simone;
MacCarthy, Thomas;
Chahwan, Richard

Publication type:

Article

An improved method for the highly specific detection of transcription start sites.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 2, p. e7, doi. 10.1093/nar/gkad1116

By:

Seki, Masahide;
Kuze, Yuta;
Zhang, Xiang;
Kurotani, Ken-ichi;
Notaguchi, Michitaka;
Nishio, Haruki;
Kudoh, Hiroshi;
Suzaki, Takuya;
Yoshida, Satoko;
Sugano, Sumio;
Matsushita, Tomonao;
Suzuki, Yutaka

Publication type:

Article

RPA guides UNG to uracil in ssDNA to facilitate antibody class switching and repair of mutagenic uracil at the replication fork.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 2, p. 784, doi. 10.1093/nar/gkad1115

By:

Hayran, Abdul B;
Liabakk, Nina B;
Aas, Per A;
Kusnierczyk, Anna;
Vågbø, Cathrine B;
Sarno, Antonio;
Iveland, Tobias S;
Chawla, Konika;
Zahn, Astrid;
Di Noia, Javier M;
Slupphaug, Geir;
Kavli, Bodil

Publication type:

Article

The replication enhancer crtS depends on transcription factor Lrp for modulating binding of initiator RctB to ori2 of Vibrio cholerae.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 2, p. 708, doi. 10.1093/nar/gkad1111

By:

Doan, Alexander;
Chatterjee, Soniya;
Kothapalli, Roopa;
Khan, Zaki;
Sen, Shaanit;
Kedei, Noemi;
Jha, Jyoti K;
Chattoraj, Dhruba K;
Ramachandran, Revathy

Publication type:

Article

Splitting the yeast centromere by recombination.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 2, p. 690, doi. 10.1093/nar/gkad1110

By:

Kozmin, Stanislav G;
Dominska, Margaret;
Zheng, Dao-Qiong;
Petes, Thomas D

Publication type:

Article

Cross-species investigation into the requirement of XPA for nucleotide excision repair.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 2, p. 677, doi. 10.1093/nar/gkad1104

By:

Kose, Cansu;
Cao, Xuemei;
Dewey, Evan B;
Malkoç, Mustafa;
Adebali, Ogün;
Sekelsky, Jeff;
Lindsey-Boltz, Laura A;
Sancar, Aziz

Publication type:

Article

Interrogating two extensively self-targeting Type I CRISPR-Cas systems in Xanthomonas albilineans reveals distinct anti-CRISPR proteins that block DNA degradation.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 2, p. 769, doi. 10.1093/nar/gkad1097

By:

Wimmer, Franziska;
Englert, Frank;
Wandera, Katharina G;
Alkhnbashi, Omer S;
Collins, Scott P;
Backofen, Rolf;
Beisel, Chase L

Publication type:

Article

The genetic landscape of origins of replication in P. falciparum.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 2, p. 660, doi. 10.1093/nar/gkad1103

By:

Castellano, Casilda Muñoz;
Lacroix, Laurent;
Mathis, Emilie;
Prorok, Paulina;
Hennion, Magali;
Lopez-Rubio, Jose-Juan;
Méchali, Marcel;
Gomes, Ana Rita

Publication type:

Article