Works matching IS 03051048 AND DT 2024 AND VI 52 AND IP 1

Results: 42

Mutual promotion of co-condensation of KRAS G-quadruplex and a well-folded protein HMGB1.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 1, p. 288, doi. 10.1093/nar/gkad938

By:

Wang, Yu;
Cao, Kaiming;
Zong, Mingxi;
Yuan, Siming;
Zhang, Na;
Liu, Yangzhong

Publication type:

Article

Correction to 'EWS–FLI1 modulated alternative splicing of ARID1A reveals novel oncogenic function through the BAF complex'.

Published in:: 2024
Publication type:: Correction Notice

TroR is the primary regulator of the iron homeostasis transcription network in the halophilic archaeon Haloferax volcanii.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 1, p. 125, doi. 10.1093/nar/gkad997

By:

Martinez Pastor, Mar;
Sakrikar, Saaz;
Hwang, Sungmin;
Hackley, Rylee K;
Soborowski, Andrew L;
Maupin-Furlow, Julie A;
Schmid, Amy K

Publication type:

Article

ATR phosphorylates DHX9 at serine 321 to suppress R-loop accumulation upon genotoxic stress.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 1, p. 204, doi. 10.1093/nar/gkad973

By:

Liu, Mei-Yin;
Lin, Keng-Ru;
Chien, Yuh-Ling;
Yang, Bing-Ze;
Tsui, Li-Yu;
Chu, Hsueh-Ping Catherine;
Wu, Ching-Shyi Peter

Publication type:

Article

Fifty years of Nucleic Acids Research.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 1, p. 1, doi. 10.1093/nar/gkad1156

By:

Sale, Julian E;
Stoddard, Barry L

Publication type:

Article

Improved discovery of RNA-binding protein binding sites in eCLIP data using DEWSeq.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 1, p. e1, doi. 10.1093/nar/gkad998

By:

Schwarzl, Thomas;
Sahadevan, Sudeep;
Lang, Benjamin;
Miladi, Milad;
Backofen, Rolf;
Huber, Wolfgang;
Hentze, Matthias W;
Tartaglia, Gian Gaetano

Publication type:

Article

Correction to 'Involvement of DNA polymerase μ in the repair of a specific subset of DNA double-strand breaks in mammalian cells'.

Published in:: 2024
Publication type:: Correction Notice

Exome-wide benchmark of difficult-to-sequence regions using short-read next-generation DNA sequencing.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 1, p. 114, doi. 10.1093/nar/gkad1140

By:

Hijikata, Atsushi;
Suyama, Mikita;
Kikugawa, Shingo;
Matoba, Ryo;
Naruto, Takuya;
Enomoto, Yumi;
Kurosawa, Kenji;
Harada, Naoki;
Yanagi, Kumiko;
Kaname, Tadashi;
Miyako, Keisuke;
Takazawa, Masaki;
Sasai, Hideo;
Hosokawa, Junichi;
Itoga, Sakae;
Yamaguchi, Tomomi;
Kosho, Tomoki;
Matsubara, Keiko;
Kuroki, Yoko;
Fukami, Maki

Publication type:

Article

CRISPR–dCas13a system for programmable small RNAs and polycistronic mRNA repression in bacteria.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 1, p. 492, doi. 10.1093/nar/gkad1130

By:

Ko, Sung Cheon;
Woo, Han Min

Publication type:

Article

Retraction of 'Mutually exclusive splicing regulates the Nav 1.6 sodium channel function through a combinatorial mechanism that involves three distinct splicing regulatory elements and their ligands'.

Published in:: 2024
Publication type:: Correction Notice

JANUS, a spliceosome-associated protein, promotes miRNA biogenesis in Arabidopsis.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 1, p. 420, doi. 10.1093/nar/gkad1105

By:

Li, Mu;
Yu, Huihui;
Zhou, Bangjun;
Gan, Lu;
Li, Shengjun;
Zhang, Chi;
Yu, Bin

Publication type:

Article

Cyclic di-GMP inhibits nitrate assimilation by impairing the antitermination function of NasT in Pseudomonas putida.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 1, p. 186, doi. 10.1093/nar/gkad1117

By:

Nie, Liang;
Xiao, Yujie;
Zhou, Tiantian;
Feng, Haoqi;
He, Meina;
Liang, Qingyuan;
Mu, Kexin;
Nie, Hailing;
Huang, Qiaoyun;
Chen, Wenli

Publication type:

Article

Interactome of intact chromatosome variants with site-specifically ubiquitylated and acetylated linker histone H1.2.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 1, p. 101, doi. 10.1093/nar/gkad1113

By:

Saumer, Philip;
Scheffner, Martin;
Marx, Andreas;
Stengel, Florian

Publication type:

Article

The Efg1–Bud22 dimer associates with the U14 snoRNP contacting the 5′ rRNA domain of an early 90S pre-ribosomal particle.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 1, p. 431, doi. 10.1093/nar/gkad1109

By:

Beine-Golovchuk, Olga;
Kallas, Martina;
Kunze, Ruth;
Griesel, Sabine;
Baßler, Jochen

Publication type:

Article

A modular dCas9-based recruitment platform for combinatorial epigenome editing.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 1, p. 474, doi. 10.1093/nar/gkad1108

By:

Swain, Tessa;
Pflueger, Christian;
Freytag, Saskia;
Poppe, Daniel;
Pflueger, Jahnvi;
Nguyen, Trung Viet;
Li, Ji Kevin;
Lister, Ryan

Publication type:

Article

Unraveling blunt-end RNA binding and ATPase-driven translocation activities of the RIG-I family helicase LGP2.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 1, p. 355, doi. 10.1093/nar/gkad1106

By:

Lee, Kuan-Ying;
Craig, Candice;
Patel, Smita S

Publication type:

Article

Structural analysis of PLD3 reveals insights into the mechanism of lysosomal 5′ exonuclease-mediated nucleic acid degradation.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 1, p. 370, doi. 10.1093/nar/gkad1114

By:

Roske, Yvette;
Cappel, Cedric;
Cremer, Nils;
Hoffmann, Patrick;
Koudelka, Tomas;
Tholey, Andreas;
Heinemann, Udo;
Daumke, Oliver;
Damme, Markus

Publication type:

Article

Substrate selectivity and catalytic activation of the type III CRISPR ancillary nuclease Can2.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 1, p. 462, doi. 10.1093/nar/gkad1102

By:

Jungfer, Kenny;
Sigg, Annina;
Jinek, Martin

Publication type:

Article

Direct visualization of replication and R-loop collision using single-molecule imaging.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 1, p. 259, doi. 10.1093/nar/gkad1101

By:

Kim, Subin;
Shin, Woo Hee;
Kang, Yujin;
Kim, Hongtae;
Lee, Ja Yil

Publication type:

Article

A novel HPV16 splicing enhancer critical for viral oncogene expression and cell immortalization.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 1, p. 316, doi. 10.1093/nar/gkad1099

By:

Jönsson, Johanna;
Wang, Lianqing;
Kajitani, Naoko;
Schwartz, Stefan

Publication type:

Article

A single fiber view of the nucleosome organization in eukaryotic chromatin.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 1, p. 166, doi. 10.1093/nar/gkad1098

By:

Boltengagen, Mark;
Verhagen, Daan;
Wolff, Michael Roland;
Oberbeckmann, Elisa;
Hanke, Matthias;
Gerland, Ulrich;
Korber, Philipp;
Mueller-Planitz, Felix

Publication type:

Article

An intronic RNA element modulates Factor VIII exon-16 splicing.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 1, p. 300, doi. 10.1093/nar/gkad1034

By:

Tse, Victor;
Chacaltana, Guillermo;
Gutierrez, Martin;
Forino, Nicholas M;
Jimenez, Arcelia G;
Tao, Hanzhang;
Do, Phong H;
Oh, Catherine;
Chary, Priyanka;
Quesada, Isabel;
Hamrick, Antonia;
Lee, Sophie;
Stone, Michael D;
Sanford, Jeremy R

Publication type:

Article

Epigenetic regulation of asymmetric cell division by the LIBR-BRD4 axis.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 1, p. 154, doi. 10.1093/nar/gkad1095

By:

Chen, Hsiao-Fan;
Chang, Chia-Ting;
Hsu, Kai-Wen;
Peng, Pei-Hua;
Lai, Joseph Chieh-Yu;
Hung, Mien-Chie;
Wu, Kou-Juey

Publication type:

Article

A conserved protein inhibitor brings under check the activity of RNase E in cyanobacteria.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 1, p. 404, doi. 10.1093/nar/gkad1094

By:

Liu, Su-Juan;
Lin, Gui-Ming;
Yuan, Yu-Qi;
Chen, Wenli;
Zhang, Ju-Yuan;
Zhang, Cheng-Cai

Publication type:

Article

Ionic liquid-caged nucleic acids enable active folding-based molecular recognition with hydrolysis resistance.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 1, p. 73, doi. 10.1093/nar/gkad1093

By:

Kang, Byunghwa;
Park, Soyeon V;
Oh, Seung Soo

Publication type:

Article

DNA superhelicity.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 1, p. 22, doi. 10.1093/nar/gkad1092

By:

Benham, Craig J

Publication type:

Article

Biochemical and cellular insights into the Baz2B protein, a non-catalytic subunit of the chromatin remodeling complex.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 1, p. 337, doi. 10.1093/nar/gkad1096

By:

Breindl, Matthias;
Spitzer, Dominika;
Gerasimaitė, Rūta;
Kairys, Visvaldas;
Schubert, Thomas;
Henfling, Ramona;
Schwartz, Uwe;
Lukinavičius, Gražvydas;
Manelytė, Laura

Publication type:

Article

Quantification of all 12 canonical ribonucleotides by real-time fluorogenic in vitro transcription.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 1, p. e6, doi. 10.1093/nar/gkad1091

By:

Purhonen, Janne;
Hofer, Anders;
Kallijärvi, Jukka

Publication type:

Article

Quantification and modeling of turnover dynamics of de novo transcripts in Drosophila melanogaster.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 1, p. 274, doi. 10.1093/nar/gkad1079

By:

Grandchamp, Anna;
Czuppon, Peter;
Bornberg-Bauer, Erich

Publication type:

Article

Epigenetic profiles guide improved CRISPR/Cas9-mediated gene knockout in human T cells.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 1, p. 141, doi. 10.1093/nar/gkad1076

By:

Ito, Yusuke;
Inoue, Satoshi;
Nakashima, Takahiro;
Zhang, Haosong;
Li, Yang;
Kasuya, Hitomi;
Matsukawa, Tetsuya;
Wu, Zhiwen;
Yoshikawa, Toshiaki;
Kataoka, Mirei;
Ishikawa, Tetsuo;
Kagoya, Yuki

Publication type:

Article

A sodium/potassium switch for G4-prone G/C-rich sequences.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 1, p. 448, doi. 10.1093/nar/gkad1073

By:

Luo, Yu;
Živković, Martina Lenarčič;
Wang, Jiawei;
Ryneš, Jan;
Foldynová-Trantírková, Silvie;
Trantírek, Lukáš;
Verga, Daniela;
Mergny, Jean-Louis

Publication type:

Article

RNA G-quadruplex folding is a multi-pathway process driven by conformational entropy.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 1, p. 87, doi. 10.1093/nar/gkad1065

By:

Ugrina, Marijana;
Burkhart, Ines;
Müller, Diana;
Schwalbe, Harald;
Schwierz, Nadine

Publication type:

Article

Reactivation of the G1 enhancer landscape underlies core circuitry addiction to SWI/SNF.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 1, p. 4, doi. 10.1093/nar/gkad1081

By:

Cermakova, Katerina;
Tao, Ling;
Dejmek, Milan;
Sala, Michal;
Montierth, Matthew D;
Chan, Yuen San;
Patel, Ivanshi;
Chambers, Courtney;
Loeza Cabrera, Mario;
Hoffman, Dane;
Parchem, Ronald J;
Wang, Wenyi;
Nencka, Radim;
Barbieri, Eveline;
Hodges, H Courtney

Publication type:

Article

PRIMPOL ensures robust handoff between on-the-fly and post-replicative DNA lesion bypass.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 1, p. 243, doi. 10.1093/nar/gkad1054

By:

Mellor, Christopher;
Nassar, Joelle;
Šviković, Saša;
Sale, Julian E

Publication type:

Article

A conserved nutrient responsive axis mediates autophagic degradation of miRNA–mRNA hybrids in blood cell progenitors.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 1, p. 385, doi. 10.1093/nar/gkad1047

By:

Ghosh, Sushmit;
Chakraborti, Sreemoyee;
Devi, Devki;
Sahu, Rajesh;
Mandal, Sudip;
Mandal, Lolitika

Publication type:

Article

The function of BCL11B in base excision repair contributes to its dual role as an oncogene and a haplo-insufficient tumor suppressor gene.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 1, p. 223, doi. 10.1093/nar/gkad1037

By:

Vickridge, Elise;
Faraco, Camila C F;
Lo, Fanny;
Rahimian, Hedyeh;
Liu, Zi Yang;
Tehrani, Payman S;
Djerir, Billel;
Ramdzan, Zubaidah M;
Leduy, Lam;
Maréchal, Alexandre;
Gingras, Anne-Claude;
Nepveu, Alain

Publication type:

Article

Detecting and dissecting signaling crosstalk via the multilayer network integration of signaling and regulatory interactions.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 1, p. e5, doi. 10.1093/nar/gkad1035

By:

Martini, Leonardo;
Baek, Seung Han;
Lo, Ian;
Raby, Benjamin A;
Silverman, Edwin K;
Weiss, Scott T;
Glass, Kimberly;
Halu, Arda

Publication type:

Article

Supercoiling-dependent DNA binding: quantitative modeling and applications to bulk and single-molecule experiments.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 1, p. 59, doi. 10.1093/nar/gkad1055

By:

Kolbeck, Pauline J;
Tišma, Miloš;
Analikwu, Brian T;
Vanderlinden, Willem;
Dekker, Cees;
Lipfert, Jan

Publication type:

Article

Characterization and decontamination of background noise in droplet-based single-cell protein expression data with DecontPro.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 1, p. e4, doi. 10.1093/nar/gkad1032

By:

Yin, Yuan;
Yajima, Masanao;
Campbell, Joshua D

Publication type:

Article

standR: spatial transcriptomic analysis for GeoMx DSP data.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 1, p. e2, doi. 10.1093/nar/gkad1026

By:

Liu, Ning;
Bhuva, Dharmesh D;
Mohamed, Ahmed;
Bokelund, Micah;
Kulasinghe, Arutha;
Tan, Chin Wee;
Davis, Melissa J

Publication type:

Article

Synthesis of peptide–siRNA conjugates via internal sulfonylphosphoramidate modifications and evaluation of their in vitro activity.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 1, p. 49, doi. 10.1093/nar/gkad1015

By:

Smidt, Jakob Melgaard;
Lykke, Lennart;
Stidsen, Carsten Enggaard;
Pristovšek, Nuša;
Gothelf, Kurt V

Publication type:

Article

Multiple sequence alignment-based RNA language model and its application to structural inference.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 1, p. e3, doi. 10.1093/nar/gkad1031

By:

Zhang, Yikun;
Lang, Mei;
Jiang, Jiuhong;
Gao, Zhiqiang;
Xu, Fan;
Litfin, Thomas;
Chen, Ke;
Singh, Jaswinder;
Huang, Xiansong;
Song, Guoli;
Tian, Yonghong;
Zhan, Jian;
Chen, Jie;
Zhou, Yaoqi

Publication type:

Article