Works matching IS 03051048 AND DT 2023 AND VI 51 AND IP 6

Results: 43

Helical coiling of metaphase chromatids.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 6, p. 2641, doi. 10.1093/nar/gkad028

By:

Kubalová, Ivona;
Câmara, Amanda Souza;
Cápal, Petr;
Beseda, Tomáš;
Rouillard, Jean-Marie;
Krause, Gina Marie;
Holušová, Kateřina;
Toegelová, Helena;
Himmelbach, Axel;
Stein, Nils;
Houben, Andreas;
Doležel, Jaroslav;
Mascher, Martin;
Šimková, Hana;
Schubert, Veit

Publication type:

Article

Correction to 'structural and functional characterization of the Severe fever with thrombocytopenia syndrome virus L protein'.

Published in:: 2023
Publication type:: Correction Notice

Correction to 'LncRNA-Smad7 mediates cross-talk between nodal/TGF-β and BMP signaling to regulate cell fate determination of pluripotent and multipotent cells'.

Published in:: 2023
Publication type:: Correction Notice

Editor's note on 'down-regulation of MDM2 and activation of p53 in human cancer cells by antisense 9-aminoacridine–PNA (peptide nucleic acid) conjugates'.

Published in:: 2023
Publication type:: Correction Notice

Expression of Concern on 'Mutually exclusive splicing regulates the Na<sub>v</sub> 1.6 sodium channel function through a combinatorial mechanism that involves three distinct splicing regulatory elements and their ligands'.

Published in:: Nucleic Acids Research, 2023, v. 51, n. 6, p. 3000, doi. 10.1093/nar/gkad163
Publication type:: Article

Correction to 'The European Genome-phenome Archive in 2021'.

Published in:: 2023
Publication type:: Correction Notice

Correction to 'Spacer2PAM: A computational framework to guide experimental determination of functional CRISPR-Cas system PAM sequences'.

Published in:: 2023
Publication type:: Correction Notice

Greedy reduction of Bacillus subtilis genome yields emergent phenotypes of high resistance to a DNA damaging agent and low evolvability.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 6, p. 2974, doi. 10.1093/nar/gkad145

By:

Dervyn, Etienne;
Planson, Anne-Gaëlle;
Tanaka, Kosei;
Chubukov, Victor;
Guérin, Cyprien;
Derozier, Sandra;
Lecointe, François;
Sauer, Uwe;
Yoshida, Ken-Ichi;
Nicolas, Pierre;
Noirot, Philippe;
Jules, Matthieu

Publication type:

Article

Discovery of natural non-circular permutations in non-coding RNAs.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 6, p. 2850, doi. 10.1093/nar/gkad137

By:

Eckert, Iris;
Friedrich, Richard;
Weinberg, Christina E;
Weinberg, Zasha

Publication type:

Article

Proximal binding of dCas9 at a DNA double strand break stimulates homology-directed repair as a local inhibitor of classical non-homologous end joining.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 6, p. 2740, doi. 10.1093/nar/gkad116

By:

Feng, Yi-Li;
Liu, Si-Cheng;
Chen, Ruo-Dan;
Sun, Xiu-Na;
Xiao, Jing-Jing;
Xiang, Ji-Feng;
Xie, An-Yong

Publication type:

Article

Human and bacterial TatD enzymes exhibit apurinic/apyrimidinic (AP) endonuclease activity.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 6, p. 2838, doi. 10.1093/nar/gkad133

By:

Dorival, Jonathan;
Eichman, Brandt F

Publication type:

Article

Identification and characterization of thousands of bacteriophage satellites across bacteria.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 6, p. 2759, doi. 10.1093/nar/gkad123

By:

de Sousa, Jorge A Moura;
Fillol-Salom, Alfred;
Penadés, José R;
Rocha, Eduardo P C

Publication type:

Article

DNA i-motif formation at neutral pH is driven by kinetic partitioning.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 6, p. 2950, doi. 10.1093/nar/gkad119

By:

Školáková, Petra;
Gajarský, Martin;
Palacký, Jan;
Šubert, Denis;
Renčiuk, Daniel;
Trantírek, Lukáš;
Mergny, Jean-Louis;
Vorlíčková, Michaela

Publication type:

Article

Structural polymorphism driven by a register shift in a CGAG-rich region found in the promoter of the neurodevelopmental regulator AUTS2 gene.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 6, p. 2602, doi. 10.1093/nar/gkad117

By:

Novotný, Aleš;
Plavec, Janez;
Kocman, Vojč

Publication type:

Article

Correlated motions in DNA: beyond base-pair step models of DNA flexibility.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 6, p. 2633, doi. 10.1093/nar/gkad136

By:

López-Güell, Kim;
Battistini, Federica;
Orozco, Modesto

Publication type:

Article

Tuning strand displacement kinetics enables programmable ZTP riboswitch dynamic range in vivo.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 6, p. 2891, doi. 10.1093/nar/gkad110

By:

Bushhouse, David Z;
Lucks, Julius B

Publication type:

Article

Structural and functional insights into the activation of the dual incision activity of UvrC, a key player in bacterial NER.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 6, p. 2931, doi. 10.1093/nar/gkad108

By:

Seck, Anna;
De Bonis, Salvatore;
Stelter, Meike;
Ökvist, Mats;
Senarisoy, Müge;
Hayek, Mohammad Rida;
Le Roy, Aline;
Martin, Lydie;
Saint-Pierre, Christine;
Silveira, Célia M;
Gasparutto, Didier;
Todorovic, Smilja;
Ravanat, Jean-Luc;
Timmins, Joanna

Publication type:

Article

When translation elongation is impaired, the mRNA is uniformly destabilized by the RNA degradosome, while the concentration of mRNA is altered along the molecule.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 6, p. 2877, doi. 10.1093/nar/gkad104

By:

Duviau, Marie-Pierre;
Chen, Fan;
Emile, Anthony;
Cocaign-Bousquet, Muriel;
Girbal, Laurence;
Nouaille, Sébastien

Publication type:

Article

Sarecycline inhibits protein translation in Cutibacterium acnes 70S ribosome using a two-site mechanism.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 6, p. 2915, doi. 10.1093/nar/gkad103

By:

Lomakin, Ivan B;
Devarkar, Swapnil C;
Patel, Shivali;
Grada, Ayman;
Bunick, Christopher G

Publication type:

Article

Crystal structures of the NAD<sup>+</sup>-II riboswitch reveal two distinct ligand-binding pockets.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 6, p. 2904, doi. 10.1093/nar/gkad102

By:

Peng, Xuemei;
Liao, Wenjian;
Lin, Xiaowei;
Lilley, David M J;
Huang, Lin

Publication type:

Article

Red light-emitting short Mango-based system enables tracking a mycobacterial small noncoding RNA in infected macrophages.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 6, p. 2586, doi. 10.1093/nar/gkad100

By:

Bychenko, Oksana S;
Khrulev, Alexei A;
Svetlova, Julia I;
Tsvetkov, Vladimir B;
Kamzeeva, Polina N;
Skvortsova, Yulia V;
Tupertsev, Boris S;
Ivanov, Igor A;
Aseev, Leonid V;
Khodarovich, Yuriy M;
Belyaev, Evgeny S;
Kozlovskaya, Liubov I;
Zatsepin, Timofei S;
Azhikina, Tatyana L;
Varizhuk, Anna M;
Aralov, Andrey V

Publication type:

Article

The mismatch repair endonuclease MutLα tethers duplex regions of DNA together and relieves DNA torsional tension.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 6, p. 2725, doi. 10.1093/nar/gkad096

By:

Witte, Scott J;
Rosa, Isabella M;
Collingwood, Bryce W;
Piscitelli, Jonathan M;
Manhart, Carol M

Publication type:

Article

A genome-wide map of DNA replication at single-molecule resolution in the malaria parasite Plasmodium falciparum.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 6, p. 2709, doi. 10.1093/nar/gkad093

By:

Totañes, Francis Isidore Garcia;
Gockel, Jonas;
Chapman, Sarah E;
Bártfai, Richárd;
Boemo, Michael A;
Merrick, Catherine J

Publication type:

Article

Human senataxin is a bona fide R-loop resolving enzyme and transcription termination factor.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 6, p. 2818, doi. 10.1093/nar/gkad092

By:

Hasanova, Zdenka;
Klapstova, Veronika;
Porrua, Odil;
Stefl, Richard;
Sebesta, Marek

Publication type:

Article

Filament assembly underpins the double-stranded DNA specificity of AIM2-like receptors.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 6, p. 2574, doi. 10.1093/nar/gkad090

By:

Garg, Archit;
Stallings, Christina M;
Sohn, Jungsan

Publication type:

Article

Incoherent merger network for robust ratiometric gene expression response.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 6, p. 2963, doi. 10.1093/nar/gkad087

By:

Kwon, Ukjin;
Huang, Hsin-Ho;
Chávez, Jorge L;
Beabout, Kathryn;
Harbaugh, Svetlana;
Del Vecchio, Domitilla

Publication type:

Article

Near-physiological in vitro assembly of 50S ribosomes involves parallel pathways.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 6, p. 2862, doi. 10.1093/nar/gkad082

By:

Dong, Xiyu;
Doerfel, Lili K;
Sheng, Kai;
Rabuck-Gibbons, Jessica N;
Popova, Anna M;
Lyumkis, Dmitry;
Williamson, James R

Publication type:

Article

Assembly mechanism and cryoEM structure of RecA recombination nucleofilaments from Streptococcus pneumoniae.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 6, p. 2800, doi. 10.1093/nar/gkad080

By:

Hertzog, Maud;
Perry, Thomas Noé;
Dupaigne, Pauline;
Serres, Sandra;
Morales, Violette;
Soulet, Anne-Lise;
Bell, Jason C;
Margeat, Emmanuel;
Kowalczykowski, Stephen C;
Le Cam, Eric;
Fronzes, Rémi;
Polard, Patrice

Publication type:

Article

Recipient UvrD helicase is involved in single- to double-stranded DNA conversion during conjugative plasmid transfer.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 6, p. 2790, doi. 10.1093/nar/gkad075

By:

Shen, Minjia;
Goldlust, Kelly;
Daniel, Sandra;
Lesterlin, Christian;
Yamaichi, Yoshiharu

Publication type:

Article

Chemistry, structure and function of approved oligonucleotide therapeutics.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 6, p. 2529, doi. 10.1093/nar/gkad067

By:

Egli, Martin;
Manoharan, Muthiah

Publication type:

Article

Regulatory and structural mechanisms of PvrA-mediated regulation of the PQS quorum-sensing system and PHA biosynthesis in Pseudomonas aeruginosa.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 6, p. 2691, doi. 10.1093/nar/gkad059

By:

Pan, Xiaolei;
Liang, Han;
Zhao, Xinrui;
Zhang, Qionglin;
Chen, Lei;
Yue, Zhuo;
Yin, Liwen;
Jin, Yongxin;
Bai, Fang;
Cheng, Zhihui;
Bartlam, Mark;
Wu, Weihui

Publication type:

Article

Comprehensive chromatin proteomics resolves functional phases of pluripotency and identifies changes in regulatory components.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 6, p. 2671, doi. 10.1093/nar/gkad058

By:

Ugur, Enes;
de la Porte, Alexandra;
Qin, Weihua;
Bultmann, Sebastian;
Ivanova, Alina;
Drukker, Micha;
Mann, Matthias;
Wierer, Michael;
Leonhardt, Heinrich

Publication type:

Article

Transcriptional pause extension benefits the stand-by rather than catch-up Rho-dependent termination.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 6, p. 2778, doi. 10.1093/nar/gkad051

By:

Song, Eunho;
Hwang, Seungha;
Munasingha, Palinda Ruvan;
Seo, Yeon-Soo;
Kang, Jin Young;
Kang, Changwon;
Hohng, Sungchul

Publication type:

Article

SMAD3 promotes expression and activity of the androgen receptor in prostate cancer.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 6, p. 2655, doi. 10.1093/nar/gkad043

By:

Jeon, Hee-Young;
Pornour, Majid;
Ryu, Hyunju;
Khadka, Sudeep;
Xu, Rui;
Jang, Jihyun;
Li, Deqiang;
Chen, Hegang;
Hussain, Arif;
Fazli, Ladan;
Gleave, Martin;
Dong, Xuesen;
Huang, Furong;
Wang, Qianben;
Barbieri, Christopher;
Qi, Jianfei

Publication type:

Article

Polymer simulations guide the detection and quantification of chromatin loop extrusion by imaging.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 6, p. 2614, doi. 10.1093/nar/gkad034

By:

Sabaté, Thomas;
Lelandais, Benoît;
Bertrand, Edouard;
Zimmer, Christophe

Publication type:

Article

High-salt transcription from enzymatically gapped promoters nets higher yields and purity of transcribed RNAs.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 6, p. e36, doi. 10.1093/nar/gkad027

By:

MalagodaPathiranage, Kithmie;
Cavac, Elvan;
Chen, Tien-Hao;
Roy, Bijoyita;
Martin, Craig T

Publication type:

Article

SPRTN-dependent DPC degradation precedes repair of damaged DNA: a proof of concept revealed by the STAR assay.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 6, p. e35, doi. 10.1093/nar/gkad022

By:

Glumac, Mateo;
Polović, Mirjana;
Batel, Anja;
Gelemanović, Andrea;
Maček, Boris;
Velić, Ana;
Marinović-Terzić, Ivana

Publication type:

Article

Versatile strategy using vaccinia virus-capping enzyme to synthesize functional 5′ cap-modified mRNAs.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 6, p. e34, doi. 10.1093/nar/gkad019

By:

Ohno, Hirohisa;
Akamine, Sae;
Mochizuki, Megumi;
Hayashi, Karin;
Akichika, Shinichiro;
Suzuki, Tsutomu;
Saito, Hirohide

Publication type:

Article

Enhancement of protein translation by CRISPR/dCasRx coupled with SINEB2 repeat of noncoding RNAs.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 6, p. e33, doi. 10.1093/nar/gkad010

By:

Cao, Congcong;
Li, Aolin;
Xu, Chaojie;
Wu, Baorui;
Liu, Jun;
Liu, Yuchen

Publication type:

Article

Genome-wide mapping of protein–DNA damage interaction by PADD-seq.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 6, p. e32, doi. 10.1093/nar/gkad008

By:

Zhu, Yongchang;
Tan, Yuanqing;
Li, Lin;
Xiang, Yuening;
Huang, Yanchao;
Zhang, Xiping;
Yin, Jiayong;
Li, Jie;
Lan, Fei;
Qian, Maoxiang;
Hu, Jinchuan

Publication type:

Article

Expanded MutaT7 toolkit efficiently and simultaneously accesses all possible transition mutations in bacteria.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 6, p. e31, doi. 10.1093/nar/gkad003

By:

Mengiste, Amanuella A;
Wilson, Robert H;
Weissman, Rachel F;
Papa III, Louis J;
Hendel, Samuel J;
Moore, Christopher L;
Butty, Vincent L;
Shoulders, Matthew D

Publication type:

Article

Internal RNA 2′O-methylation in the HIV-1 genome counteracts ISG20 nuclease-mediated antiviral effect.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 6, p. 2501, doi. 10.1093/nar/gkac996

By:

El Kazzi, Priscila;
Rabah, Nadia;
Chamontin, Célia;
Poulain, Lina;
Ferron, François;
Debart, Françoise;
Canard, Bruno;
Missé, Dorothée;
Coutard, Bruno;
Nisole, Sébastien;
Decroly, Etienne

Publication type:

Article

The FANCC–FANCE–FANCF complex is evolutionarily conserved and regulates meiotic recombination.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 6, p. 2516, doi. 10.1093/nar/gkac1244

By:

Singh, Dipesh Kumar;
Gamboa, Rigel Salinas;
Singh, Avinash Kumar;
Walkemeier, Birgit;
Van Leene, Jelle;
De Jaeger, Geert;
Siddiqi, Imran;
Guerois, Raphael;
Crismani, Wayne;
Mercier, Raphael

Publication type:

Article