Works matching IS 03051048 AND DT 2023 AND VI 51 AND IP 4

Results: 42

Expression of concern to 'Depletion of TDP 43 overrides the need for exonic and intronic splicing enhancers in the human apoA-II gene'.

Published in:: 2023
Publication type:: Letter to the Editor

Correction to 'Pharos 2023: An integrated resource for the understudied human proteome'.

Published in:: 2023
Publication type:: Correction Notice

Correction to 'Rad52 SUMOylation affects the efficiency of the DNA repair'.

Published in:: 2023
Publication type:: Correction Notice

Mousepost 2.0, a major expansion of the resource.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 4, p. 1652, doi. 10.1093/nar/gkad064

By:

Timmermans, Steven;
Vandewalle, Jolien;
Libert, Claude

Publication type:

Article

The Ku complex promotes DNA end-bridging and this function is antagonized by Tel1/ATM kinase.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 4, p. 1783, doi. 10.1093/nar/gkad062

By:

Rinaldi, Carlo;
Pizzul, Paolo;
Casari, Erika;
Mangiagalli, Marco;
Tisi, Renata;
Longhese, Maria Pia

Publication type:

Article

Anti-CRISPR AcrIIC5 is a dsDNA mimic that inhibits type II-C Cas9 effectors by blocking PAM recognition.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 4, p. 1984, doi. 10.1093/nar/gkad052

By:

Sun, Wei;
Zhao, Xiaolong;
Wang, Jinlong;
Yang, Xiaoqi;
Cheng, Zhi;
Liu, Shuo;
Wang, Jiuyu;
Sheng, Gang;
Wang, Yanli

Publication type:

Article

Identification of a novel 5-aminomethyl-2-thiouridine methyltransferase in tRNA modification.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 4, p. 1971, doi. 10.1093/nar/gkad048

By:

Cho, Gyuhyeok;
Lee, Jangmin;
Kim, Jungwook

Publication type:

Article

Ribosomes lacking bS21 gain function to regulate protein synthesis in Flavobacterium johnsoniae.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 4, p. 1927, doi. 10.1093/nar/gkad047

By:

McNutt, Zakkary A;
Roy, Bappaditya;
Gemler, Bryan T;
Shatoff, Elan A;
Moon, Kyung-Mee;
Foster, Leonard J;
Bundschuh, Ralf;
Fredrick, Kurt

Publication type:

Article

Recovering false negatives in CRISPR fitness screens with JLOE.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 4, p. 1637, doi. 10.1093/nar/gkad046

By:

Dede, Merve;
Hart, Traver

Publication type:

Article

Nanopore sequencing for N1-methylpseudouridine in RNA reveals sequence-dependent discrimination of the modified nucleotide triphosphate during transcription.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 4, p. 1914, doi. 10.1093/nar/gkad044

By:

Fleming, Aaron M;
Burrows, Cynthia J

Publication type:

Article

Correction to 'Structural and functional characterization of DdrC, a novel DNA damage-induced nucleoid associated protein involved in DNA compaction'.

Published in:: 2023
Publication type:: Correction Notice

Strand specificity of ribonucleotide excision repair in Escherichia coli.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 4, p. 1766, doi. 10.1093/nar/gkad038

By:

Łazowski, Krystian;
Faraz, Mahmood;
Vaisman, Alexandra;
Ashton, Nicholas W;
Jonczyk, Piotr;
Fijalkowska, Iwona J;
Clausen, Anders R;
Woodgate, Roger;
Makiela-Dzbenska, Karolina

Publication type:

Article

Mechanism of strand displacement DNA synthesis by the coordinated activities of human mitochondrial DNA polymerase and SSB.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 4, p. 1750, doi. 10.1093/nar/gkad037

By:

Plaza-G.A., Ismael;
Lemishko, Kateryna M;
Crespo, Rodrigo;
Truong, Thinh Q;
Kaguni, Laurie S;
Cao-García, Francisco J;
Ciesielski, Grzegorz L;
Ibarra, Borja

Publication type:

Article

Interaction of human HelQ with DNA polymerase delta halts DNA synthesis and stimulates DNA single-strand annealing.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 4, p. 1740, doi. 10.1093/nar/gkad032

By:

He, Liu;
Lever, Rebecca;
Cubbon, Andrew;
Tehseen, Muhammad;
Jenkins, Tabitha;
Nottingham, Alice O;
Horton, Anya;
Betts, Hannah;
Fisher, Martin;
Hamdan, Samir M;
Soultanas, Panos;
Bolt, Edward L

Publication type:

Article

Activatable G-quadruplex based catalases for signal transduction in biosensing.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 4, p. 1600, doi. 10.1093/nar/gkad031

By:

Iwaniuk, Elzbieta E;
Adebayo, Thuwebat;
Coleman, Seth;
Villaros, Caitlin G;
Nesterova, Irina V

Publication type:

Article

eIF4A1-dependent mRNAs employ purine-rich 5'UTR sequences to activate localised eIF4A1-unwinding through eIF4A1-multimerisation to facilitate translation.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 4, p. 1859, doi. 10.1093/nar/gkad030

By:

Schmidt, Tobias;
Dabrowska, Adrianna;
Waldron, Joseph A;
Hodge, Kelly;
Koulouras, Grigorios;
Gabrielsen, Mads;
Munro, June;
Tack, David C;
Harris, Gemma;
McGhee, Ewan;
Scott, David;
Carlin, Leo M;
Huang, Danny;
Le Quesne, John;
Zanivan, Sara;
Wilczynska, Ania;
Bushell, Martin

Publication type:

Article

Simultaneous inhibition of endocytic recycling and lysosomal fusion sensitizes cells and tissues to oligonucleotide therapeutics.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 4, p. 1583, doi. 10.1093/nar/gkad023

By:

Finicle, Brendan T;
Eckenstein, Kazumi H;
Revenko, Alexey S;
Anderson, Brooke A;
Wan, W Brad;
McCracken, Alison N;
Gil, Daniel;
Fruman, David A;
Hanessian, Stephen;
Seth, Punit P;
Edinger, Aimee L

Publication type:

Article

Correction to 'PRC2-independent actions of H3.3K27M in embryonic stem cell differentiation'.

Published in:: 2023
Publication type:: Correction Notice

The structural mechanism for transcription activation by Caulobacter crescentus GcrA.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 4, p. 1960, doi. 10.1093/nar/gkad016

By:

Wu, Xiaoxian;
Yu, Chengzhi;
Mu, Wenhui;
Gu, Zhanxi;
Feng, Yu;
Zhang, Yu

Publication type:

Article

Structure of a 28.5 kDa duplex-embedded G-quadruplex system resolved to 7.4 Å resolution with cryo-EM.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 4, p. 1943, doi. 10.1093/nar/gkad014

By:

Monsen, Robert C;
Chua, Eugene Y D;
Hopkins, Jesse B;
Chaires, Jonathan B;
Trent, John O

Publication type:

Article

Structural predictions of protein–DNA binding: MELD-DNA.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 4, p. 1625, doi. 10.1093/nar/gkad013

By:

Esmaeeli, Reza;
Bauzá, Antonio;
Perez, Alberto

Publication type:

Article

A clade of RHH proteins ubiquitous in Sulfolobales and their viruses regulates cell cycle progression.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 4, p. 1724, doi. 10.1093/nar/gkad011

By:

Xuyang, Li;
Cristina, Lozano-Madueño;
Laura, Martínez-Alvarez;
Xu, Peng

Publication type:

Article

The tRNA identity landscape for aminoacylation and beyond.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 4, p. 1528, doi. 10.1093/nar/gkad007

By:

Giegé, Richard;
Eriani, Gilbert

Publication type:

Article

A novel RHH family transcription factor aCcr1 and its viral homologs dictate cell cycle progression in archaea.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 4, p. 1707, doi. 10.1093/nar/gkad006

By:

Yang, Yunfeng;
Liu, Junfeng;
Fu, Xiaofei;
Zhou, Fan;
Zhang, Shuo;
Zhang, Xuemei;
Huang, Qihong;
Krupovic, Mart;
She, Qunxin;
Ni, Jinfeng;
Shen, Yulong

Publication type:

Article

Passer, a highly active transposon from a fish genome, as a potential new robust genetic manipulation tool.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 4, p. 1843, doi. 10.1093/nar/gkad005

By:

Wang, Saisai;
Gao, Bo;
Miskey, Csaba;
Guan, Zhongxia;
Sang, Yatong;
Chen, Cai;
Wang, Xiaoyan;
Ivics, Zoltán;
Song, Chengyi

Publication type:

Article

Inhibited complete folding of consecutive human telomeric G-quadruplexes.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 4, p. 1571, doi. 10.1093/nar/gkad004

By:

Kristoffersen, Emil Laust;
Coletta, Andrea;
Lund, Line Mørkholt;
Schiøtt, Birgit;
Birkedal, Victoria

Publication type:

Article

P-TEFb promotes cell survival upon p53 activation by suppressing intrinsic apoptosis pathway.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 4, p. 1687, doi. 10.1093/nar/gkad001

By:

Wang, Zhijia;
Mačáková, Monika;
Bugai, Andrii;
Kuznetsov, Sergey G;
Hassinen, Antti;
Lenasi, Tina;
Potdar, Swapnil;
Friedel, Caroline C;
Barborič, Matjaž

Publication type:

Article

PRC2-independent actions of H3.3K27M in embryonic stem cell differentiation.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 4, p. 1662, doi. 10.1093/nar/gkac800

By:

Cohen, Lea R Z;
Kaffe, Binyamin;
Deri, Eden;
Leibson, Chen;
Nissim-Rafinia, Malka;
Maman, Moria;
Harpaz, Nofar;
Ron, Guy;
Shema, Efrat;
Meshorer, Eran

Publication type:

Article

Upstream of N-Ras C-terminal cold shock domains mediate poly(A) specificity in a novel RNA recognition mode and bind poly(A) binding protein.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 4, p. 1895, doi. 10.1093/nar/gkac1277

By:

Hollmann, Nele Merret;
Jagtap, Pravin Kumar Ankush;
Linse, Johanna-Barbara;
Ullmann, Philip;
Payr, Marco;
Murciano, Brice;
Simon, Bernd;
Hub, Jochen S;
Hennig, Janosch

Publication type:

Article

Cold-induced inhibition of photosynthesis-related genes integrated by a TOP6 complex in rice mesophyll cells.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 4, p. 1823, doi. 10.1093/nar/gkac1275

By:

Xu, Zhan;
Zhang, Jianxiang;
Wang, Xu;
Essemine, Jemaa;
Jin, Jing;
Qu, Mingnan;
Xiang, Yong;
Chen, Weixiong

Publication type:

Article

Allosteric autoregulation of DNA binding via a DNA-mimicking protein domain: a biophysical study of ZNF410–DNA interaction using small angle X-ray scattering.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 4, p. 1674, doi. 10.1093/nar/gkac1274

By:

Kaur, Gundeep;
Ren, Ren;
Hammel, Michal;
Horton, John R;
Yang, Jie;
Cao, Yu;
He, Chenxi;
Lan, Fei;
Lan, Xianjiang;
Blobel, Gerd A;
Blumenthal, Robert M;
Zhang, Xing;
Cheng, Xiaodong

Publication type:

Article

Rare ribosomal RNA sequences from archaea stabilize the bacterial ribosome.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 4, p. 1880, doi. 10.1093/nar/gkac1273

By:

Nissley, Amos J;
Penev, Petar I;
Watson, Zoe L;
Banfield, Jillian F;
Cate, Jamie H D

Publication type:

Article

Predictive model of transcriptional elongation control identifies trans regulatory factors from chromatin signatures.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 4, p. 1608, doi. 10.1093/nar/gkac1272

By:

Akcan, Toray S;
Vilov, Sergey;
Heinig, Matthias

Publication type:

Article

Dynamic states of eIF6 and SDS variants modulate interactions with uL14 of the 60S ribosomal subunit.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 4, p. 1803, doi. 10.1093/nar/gkac1266

By:

Elliff, Jonah;
Biswas, Aparna;
Roshan, Poonam;
Kuppa, Sahiti;
Patterson, Angela;
Mattice, Jenna;
Chinnaraj, Mathivanan;
Burd, Ryan;
Walker, Sarah E;
Pozzi, Nicola;
Antony, Edwin;
Bothner, Brian;
Origanti, Sofia

Publication type:

Article

Synthetic circular RNA switches and circuits that control protein expression in mammalian cells.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 4, p. e24, doi. 10.1093/nar/gkac1252

By:

Kameda, Shigetoshi;
Ohno, Hirohisa;
Saito, Hirohide

Publication type:

Article

Dr.Nod: computational framework for discovery of regulatory non-coding drivers in tissue-matched distal regulatory elements.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 4, p. e23, doi. 10.1093/nar/gkac1251

By:

Tomkova, Marketa;
Tomek, Jakub;
Chow, Julie;
McPherson, John D;
Segal, David J;
Hormozdiari, Fereydoun

Publication type:

Article

OKseqHMM: a genome-wide replication fork directionality analysis toolkit.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 4, p. e22, doi. 10.1093/nar/gkac1239

By:

Liu, Yaqun;
Wu, Xia;
d'Aubenton-Carafa, Yves;
Thermes, Claude;
Chen, Chun-Long

Publication type:

Article

Single-cell gene regulatory network prediction by explainable AI.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 4, p. e20, doi. 10.1093/nar/gkac1212

By:

Keyl, Philipp;
Bischoff, Philip;
Dernbach, Gabriel;
Bockmayr, Michael;
Fritz, Rebecca;
Horst, David;
Blüthgen, Nils;
Montavon, Grégoire;
Müller, Klaus-Robert;
Klauschen, Frederick

Publication type:

Article

High-throughput quantitative binding analysis of DNA aptamers using exonucleases.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 4, p. e19, doi. 10.1093/nar/gkac1210

By:

Canoura, Juan;
Alkhamis, Obtin;
Liu, Yingzhu;
Willis, Connor;
Xiao, Yi

Publication type:

Article

Dissection of the Caenorhabditis elegans Microprocessor.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 4, p. 1512, doi. 10.1093/nar/gkac1170

By:

Nguyen, Thuy Linh;
Nguyen, Trung Duc;
Ngo, Minh Khoa;
Nguyen, Tuan Anh

Publication type:

Article

CRISPR-Cas9 recognition of enzymatically synthesized base-modified nucleic acids.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 4, p. 1501, doi. 10.1093/nar/gkac1147

By:

Yang, Hui;
Eremeeva, Elena;
Abramov, Mikhail;
Jacquemyn, Maarten;
Groaz, Elisabetta;
Daelemans, Dirk;
Herdewijn, Piet

Publication type:

Article

Transmicron: accurate prediction of insertion probabilities improves detection of cancer driver genes from transposon mutagenesis screens.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 4, p. e21, doi. 10.1093/nar/gkac1215

By:

Bredthauer, Carl;
Fischer, Anja;
Ahari, Ata Jadid;
Cao, Xueqi;
Weber, Julia;
Rad, Lena;
Rad, Roland;
Wachutka, Leonhard;
Gagneur, Julien

Publication type:

Article