Works matching IS 03051048 AND DT 2023 AND VI 51 AND IP 2

Results: 36

Human DNA ligases I and III have stand-alone end-joining capability, but differ in ligation efficiency and specificity.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 2, p. 796, doi. 10.1093/nar/gkac1263

By:

McNally, Justin R;
Ames, Amanda M;
Admiraal, Suzanne J;
O'Brien, Patrick J

Publication type:

Article

The S. cerevisiae m<sup>6</sup>A-reader Pho92 promotes timely meiotic recombination by controlling key methylated transcripts.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 2, p. 517, doi. 10.1093/nar/gkac640

By:

Scutenaire, Jérémy;
Plassard, Damien;
Matelot, Mélody;
Villa, Tommaso;
Zumsteg, Julie;
Libri, Domenico;
Séraphin, Bertrand

Publication type:

Article

Construction of a cross-species cell landscape at single-cell level.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 2, p. 501, doi. 10.1093/nar/gkac633

By:

Wang, Renying;
Zhang, Peijing;
Wang, Jingjing;
Ma, Lifeng;
E, Weigao;
Suo, Shengbao;
Jiang, Mengmeng;
Li, Jiaqi;
Chen, Haide;
Sun, Huiyu;
Fei, Lijiang;
Zhou, Ziming;
Zhou, Yincong;
Chen, Yao;
Zhang, Weiqi;
Wang, Xinru;
Mei, Yuqing;
Sun, Zhongyi;
Yu, Chengxuan;
Shao, Jikai

Publication type:

Article

Editor's Note on 'Cancer-derived p53 mutants suppress p53-target gene expression—potential mechanism for gain of function of mutant p53'.

Published in:: Nucleic Acids Research, 2023, v. 51, n. 2, p. 997, doi. 10.1093/nar/gkac1265
Publication type:: Article

Multi-layered chromatin proteomics identifies cell vulnerabilities in DNA repair.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 2, p. 687, doi. 10.1093/nar/gkac1264

By:

Sigismondo, Gianluca;
Arseni, Lavinia;
Palacio-Escat, Nicolàs;
Hofmann, Thomas G;
Seiffert, Martina;
Krijgsveld, Jeroen

Publication type:

Article

A fish herpesvirus highlights functional diversities among Zα domains related to phase separation induction and A-to-Z conversion.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 2, p. 806, doi. 10.1093/nar/gkac761

By:

Diallo, Mamadou Amadou;
Pirotte, Sébastien;
Hu, Yunlong;
Morvan, Léa;
Rakus, Krzysztof;
Suárez, Nicolás M;
PoTsang, Lee;
Saneyoshi, Hisao;
Xu, Yan;
Davison, Andrew J;
Tompa, Peter;
Sussman, Joel L;
Vanderplasschen, Alain

Publication type:

Article

Molecular architecture and oligomerization of Candida glabrata Cdc13 underpin its telomeric DNA-binding and unfolding activity.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 2, p. 668, doi. 10.1093/nar/gkac1261

By:

Coloma, Javier;
Gonzalez-Rodriguez, Nayim;
Balaguer, Francisco A;
Gmurczyk, Karolina;
Aicart-Ramos, Clara;
Nuero, Óscar M;
Luque-Ortega, Juan Román;
Calugaru, Kimberly;
Lue, Neal F;
Moreno-Herrero, Fernando;
Llorca, Oscar

Publication type:

Article

Structural insights into translation regulation by the THF-II riboswitch.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 2, p. 952, doi. 10.1093/nar/gkac1257

By:

Xu, Lilei;
Xiao, Yu;
Zhang, Jie;
Fang, Xianyang

Publication type:

Article

Metabolically-targeted dCas9 expression in bacteria.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 2, p. 982, doi. 10.1093/nar/gkac1248

By:

Pellegrino, Gregory M;
Browne, Tyler S;
Sharath, Keerthana;
Bari, Khaleda A;
Vancuren, Sarah J;
Allen-Vercoe, Emma;
Gloor, Gregory B;
Edgell, David R

Publication type:

Article

Resolution of sequence divergence for repeat-mediated deletions shows a polarity that is mediated by MLH1.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 2, p. 650, doi. 10.1093/nar/gkac1240

By:

Trost, Hannah;
Merkell, Arianna;
Lopezcolorado, Felicia Wednesday;
Stark, Jeremy M

Publication type:

Article

Cellular APOBEC3A deaminase drives mutations in the SARS-CoV-2 genome.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 2, p. 783, doi. 10.1093/nar/gkac1238

By:

Nakata, Yoshihiro;
Ode, Hirotaka;
Kubota, Mai;
Kasahara, Takaaki;
Matsuoka, Kazuhiro;
Sugimoto, Atsuko;
Imahashi, Mayumi;
Yokomaku, Yoshiyuki;
Iwatani, Yasumasa

Publication type:

Article

Influence of chain length and branching on poly(ADP-ribose)–protein interactions.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 2, p. 536, doi. 10.1093/nar/gkac1235

By:

Löffler, Tobias;
Krüger, Annika;
Zirak, Peyman;
Winterhalder, Martin J;
Müller, Anna-Lena;
Fischbach, Arthur;
Mangerich, Aswin;
Zumbusch, Andreas

Publication type:

Article

Translation initiation of leaderless and polycistronic transcripts in mammalian mitochondria.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 2, p. 891, doi. 10.1093/nar/gkac1233

By:

Remes, Cristina;
Khawaja, Anas;
Pearce, Sarah F;
Dinan, Adam M;
Gopalakrishna, Shreekara;
Cipullo, Miriam;
Kyriakidis, Vasileios;
Zhang, Jingdian;
Dopico, Xaquin Castro;
Yukhnovets, Olessya;
Atanassov, Ilian;
Firth, Andrew E;
Cooperman, Barry;
Rorbach, Joanna

Publication type:

Article

Structural basis of Qng1-mediated salvage of the micronutrient queuine from queuosine-5′-monophosphate as the biological substrate.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 2, p. 935, doi. 10.1093/nar/gkac1231

By:

Hung, Shr-Hau;
Elliott, Gregory I;
Ramkumar, Thakku R;
Burtnyak, Lyubomyr;
McGrenaghan, Callum J;
Alkuzweny, Sana;
Quaiyum, Samia;
Iwata-Reuyl, Dirk;
Pan, Xiaobei;
Green, Brian D;
Kelly, Vincent P;
de Crécy-Lagard, Valérie;
Swairjo, Manal A

Publication type:

Article

ZNF212 promotes genomic integrity through direct interaction with TRAIP.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 2, p. 631, doi. 10.1093/nar/gkac1226

By:

Chung, Hee Jin;
Lee, Joo Rak;
Kim, Tae Moon;
Kim, Soomi;
Park, Kibeom;
Kim, Myung-Jin;
Jung, Eunyoung;
Kim, Subin;
Lee, Eun A;
Ra, Jae Sun;
Hwang, Sunyoung;
Lee, Ja Yil;
Schärer, Orlando D;
Kim, Yonghwan;
Myung, Kyungjae;
Kim, Hongtae

Publication type:

Article

Poison cassette exon splicing of SRSF6 regulates nuclear speckle dispersal and the response to hypoxia.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 2, p. 870, doi. 10.1093/nar/gkac1225

By:

de Oliveira Freitas Machado, Camila;
Schafranek, Michal;
Brüggemann, Mirko;
Hernández Cañás, María Clara;
Keller, Mario;
Di Liddo, Antonella;
Brezski, Andre;
Blümel, Nicole;
Arnold, Benjamin;
Bremm, Anja;
Wittig, Ilka;
Jaé, Nicolas;
McNicoll, François;
Dimmeler, Stefanie;
Zarnack, Kathi;
Müller-McNicoll, Michaela

Publication type:

Article

Identification and characterization of RNA binding sites for (p)ppGpp using RNA-DRaCALA.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 2, p. 852, doi. 10.1093/nar/gkac1224

By:

Jagodnik, Jonathan;
Tjaden, Brian;
Ross, Wilma;
Gourse, Richard L

Publication type:

Article

Exploiting natural riboswitches for aptamer engineering and validation.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 2, p. 966, doi. 10.1093/nar/gkac1218

By:

Mohsen, Michael G;
Midy, Matthew K;
Balaji, Aparaajita;
Breaker, Ronald R

Publication type:

Article

Discovery and characterization of novel type I-D CRISPR-guided transposons identified among diverse Tn7-like elements in cyanobacteria.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 2, p. 765, doi. 10.1093/nar/gkac1216

By:

Hsieh, Shan-Chi;
Peters, Joseph E

Publication type:

Article

CK2 promotes jasmonic acid signaling response by phosphorylating MYC2 in Arabidopsis.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 2, p. 619, doi. 10.1093/nar/gkac1213

By:

Zhu, Jiang;
Wang, Wen-Shu;
Yan, Da-Wei;
Hong, Li-Wei;
Li, Ting-Ting;
Gao, Xiang;
Yang, Yun-Huang;
Ren, Feng;
Lu, Ying-Tang;
Yuan, Ting-Ting

Publication type:

Article

Ratchet, swivel, tilt and roll: a complete description of subunit rotation in the ribosome.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 2, p. 919, doi. 10.1093/nar/gkac1211

By:

Hassan, Asem;
Byju, Sandra;
Freitas, Frederico Campos;
Roc, Claude;
Pender, Nisaa;
Nguyen, Kien;
Kimbrough, Evelyn M;
Mattingly, Jacob M;
Gonzalez Jr., Ruben L;
de Oliveira, Ronaldo Junio;
Dunham, Christine M;
Whitford, Paul C

Publication type:

Article

Polyribosomes of circular topology are prevalent in mammalian cells.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 2, p. 908, doi. 10.1093/nar/gkac1208

By:

Baymukhametov, Timur N;
Lyabin, Dmitry N;
Chesnokov, Yury M;
Sorokin, Ivan I;
Pechnikova, Evgeniya V;
Vasiliev, Alexander L;
Afonina, Zhanna A

Publication type:

Article

Npl3 functions in mRNP assembly by recruitment of mRNP components to the transcription site and their transfer onto the mRNA.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 2, p. 831, doi. 10.1093/nar/gkac1206

By:

Keil, Philipp;
Wulf, Alexander;
Kachariya, Nitin;
Reuscher, Samira;
Hühn, Kristin;
Silbern, Ivan;
Altmüller, Janine;
Keller, Mario;
Stehle, Ralf;
Zarnack, Kathi;
Sattler, Michael;
Urlaub, Henning;
Sträßer, Katja

Publication type:

Article

POT-3 preferentially binds the terminal DNA-repeat on the telomeric G-overhang.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 2, p. 610, doi. 10.1093/nar/gkac1203

By:

Yu, Xupeng;
Gray, Sean;
Ferreira, Helder C

Publication type:

Article

The DEAD-box protein Dbp6 is an ATPase and RNA annealase interacting with the peptidyl transferase center (PTC) of the ribosome.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 2, p. 744, doi. 10.1093/nar/gkac1196

By:

Khreiss, Ali;
Capeyrou, Régine;
Lebaron, Simon;
Albert, Benjamin;
Bohnsack, Katherine E;
Bohnsack, Markus T;
Henry, Yves;
Henras, Anthony K;
Humbert, Odile

Publication type:

Article

A novel active transposon creates allelic variation through altered translation rate to influence protein abundance.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 2, p. 595, doi. 10.1093/nar/gkac1195

By:

Chen, Guo;
Wang, Ruilin;
Jiang, Yizhe;
Dong, Xiaoxiao;
Xu, Jing;
Xu, Qiang;
Kan, Qiuxin;
Luo, Zhixiang;
Springer, Nathan M;
Li, Qing

Publication type:

Article

The histone acetyltransferase KAT6A is recruited to unmethylated CpG islands via a DNA binding winged helix domain.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 2, p. 574, doi. 10.1093/nar/gkac1188

By:

Weber, Lisa Marie;
Jia, Yulin;
Stielow, Bastian;
Gisselbrecht, Stephen S;
Cao, Yinghua;
Ren, Yanpeng;
Rohner, Iris;
King, Jessica;
Rothman, Elisabeth;
Fischer, Sabrina;
Simon, Clara;
Forné, Ignasi;
Nist, Andrea;
Stiewe, Thorsten;
Bulyk, Martha L;
Wang, Zhanxin;
Liefke, Robert

Publication type:

Article

Cis-mediated interactions of the SARS-CoV-2 frameshift RNA alter its conformations and affect function.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 2, p. 728, doi. 10.1093/nar/gkac1184

By:

Pekarek, Lukas;
Zimmer, Matthias M;
Gribling-Burrer, Anne-Sophie;
Buck, Stefan;
Smyth, Redmond;
Caliskan, Neva

Publication type:

Article

Mutations in the non-coding RNU4ATAC gene affect the homeostasis and function of the Integrator complex.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 2, p. 712, doi. 10.1093/nar/gkac1182

By:

Almentina Ramos Shidi, Fatimat;
Cologne, Audric;
Delous, Marion;
Besson, Alicia;
Putoux, Audrey;
Leutenegger, Anne-Louise;
Lacroix, Vincent;
Edery, Patrick;
Mazoyer, Sylvie;
Bordonné, Rémy

Publication type:

Article

Systematic identification of gene-altering programmed inversions across the bacterial domain.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 2, p. 553, doi. 10.1093/nar/gkac1166

By:

Milman, Oren;
Yelin, Idan;
Kishony, Roy

Publication type:

Article

ONE-seq: epitranscriptome and gene-specific profiling of NAD-capped RNA.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 2, p. e12, doi. 10.1093/nar/gkac1136

By:

Niu, Kongyan;
Zhang, Jinyang;
Ge, Shuwen;
Li, Dean;
Sun, Kunfeng;
You, Yingnan;
Qiu, Jiaqian;
Wang, Kun;
Wang, Xueting;
Liu, Rui;
Liu, Yandong;
Li, Bing;
Zhu, Zheng-Jiang;
Qu, Lefeng;
Jiang, Hong;
Liu, Nan

Publication type:

Article

Freddie: annotation-independent detection and discovery of transcriptomic alternative splicing isoforms using long-read sequencing.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 2, p. e11, doi. 10.1093/nar/gkac1112

By:

Orabi, Baraa;
Xie, Ning;
McConeghy, Brian;
Dong, Xuesen;
Chauve, Cedric;
Hach, Faraz

Publication type:

Article

CYCLeR—a novel tool for the full isoform assembly and quantification of circRNAs.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 2, p. e10, doi. 10.1093/nar/gkac1100

By:

Stefanov, Stefan R;
Meyer, Irmtraud M

Publication type:

Article

Incorporating cell hierarchy to decipher the functional diversity of single cells.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 2, p. e9, doi. 10.1093/nar/gkac1044

By:

Chen, Lingxi;
Li, Shuai Cheng

Publication type:

Article

scHumanNet: a single-cell network analysis platform for the study of cell-type specificity of disease genes.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 2, p. e8, doi. 10.1093/nar/gkac1042

By:

Cha, Junha;
Yu, Jiwon;
Cho, Jae-Won;
Hemberg, Martin;
Lee, Insuk

Publication type:

Article

LazySampling and LinearSampling: fast stochastic sampling of RNA secondary structure with applications to SARS-CoV-2.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 2, p. e7, doi. 10.1093/nar/gkac1029

By:

Zhang, He;
Li, Sizhen;
Zhang, Liang;
Mathews, David H;
Huang, Liang

Publication type:

Article